RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 DDX19BQ9UMR2 479 aa17.13■□□□□ 0.33
HLA-DMA-208ENST00000477541 MED14O60244 1454 aa17.12■□□□□ 0.33
HLA-DMA-208ENST00000477541 PTMSP20962 102 aa17.12■□□□□ 0.33
HLA-DMA-208ENST00000477541 MCM4P33991 863 aa17.12■□□□□ 0.33
HLA-DMA-208ENST00000477541 SLKQ9H2G2 1235 aaPredicted RBP17.12■□□□□ 0.33
HLA-DMA-208ENST00000477541 REREQ9P2R6 1566 aa17.11■□□□□ 0.33
HLA-DMA-208ENST00000477541 GOLGA6L3A6NEY3 463 aa17.11■□□□□ 0.33
HLA-DMA-208ENST00000477541 RLBP1P12271 317 aa17.11■□□□□ 0.33
HLA-DMA-208ENST00000477541 MLECQ14165 292 aa17.11■□□□□ 0.33
HLA-DMA-208ENST00000477541 DDX11L8A8MPP1 907 aa17.1■□□□□ 0.33
HLA-DMA-208ENST00000477541 FTSJ3Q8IY81 847 aaKnown RBP17.1■□□□□ 0.33
HLA-DMA-208ENST00000477541 NCOA3Q9Y6Q9 1424 aa17.1■□□□□ 0.33
HLA-DMA-208ENST00000477541 PIK3C2BO00750 1634 aa17.1■□□□□ 0.33
HLA-DMA-208ENST00000477541 C22orf23Q9BZE7 217 aa17.1■□□□□ 0.33
HLA-DMA-208ENST00000477541 EVC2Q86UK5 1308 aa17.09■□□□□ 0.33
HLA-DMA-208ENST00000477541 MTHFSP49914 203 aa17.09■□□□□ 0.33
HLA-DMA-208ENST00000477541 UBE2Q2Q8WVN8 375 aa17.09■□□□□ 0.33
HLA-DMA-208ENST00000477541 SETD1BQ9UPS6 1966 aaKnown RBP17.09■□□□□ 0.33
HLA-DMA-208ENST00000477541 EIF5BO60841 1220 aaKnown RBP17.08■□□□□ 0.32
HLA-DMA-208ENST00000477541 CIZ1Q9ULV3 898 aaPredicted RBP17.08■□□□□ 0.32
HLA-DMA-208ENST00000477541 TULP4Q9NRJ4 1543 aa17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 SMC5Q8IY18 1101 aa17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 PNNQ9H307 717 aaKnown RBP17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 KIF16BQ96L93 1317 aa17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 SNX21Q969T3 373 aa17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 ZNF428Q96B54 188 aa17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 CHMP4BQ9H444 224 aaKnown RBP17.07■□□□□ 0.32
HLA-DMA-208ENST00000477541 CEBPAP49715 358 aaPredicted RBP17.06■□□□□ 0.32
HLA-DMA-208ENST00000477541 MRE11P49959 708 aa17.06■□□□□ 0.32
HLA-DMA-208ENST00000477541 HSCBQ8IWL3 235 aa17.06■□□□□ 0.32
HLA-DMA-208ENST00000477541 COL3A1P02461 1466 aaPredicted RBP17.06■□□□□ 0.32
HLA-DMA-208ENST00000477541 CAMSAP1Q5T5Y3 1602 aa17.06■□□□□ 0.32
HLA-DMA-208ENST00000477541 CLTCQ00610 1675 aaKnown RBP17.05■□□□□ 0.32
HLA-DMA-208ENST00000477541 CDC42BPGQ6DT37 1551 aa17.05■□□□□ 0.32
HLA-DMA-208ENST00000477541 IPO8O15397 1037 aaKnown RBP17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 RBM25P49756 843 aaKnown RBP17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 NEUROD2Q15784 382 aa17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 SLC12A5Q9H2X9 1139 aa17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 RRP7AQ9Y3A4 280 aaKnown RBP17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 ZFYVE9O95405 1425 aa17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 NPATQ14207 1427 aa17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 MLH3Q9UHC1 1453 aa17.04■□□□□ 0.32
HLA-DMA-208ENST00000477541 ALDH1L2Q3SY69 923 aa17.03■□□□□ 0.32
HLA-DMA-208ENST00000477541 ATF7IPQ6VMQ6 1270 aa17.03■□□□□ 0.32
HLA-DMA-208ENST00000477541 CLCN1P35523 988 aa17.02■□□□□ 0.32
HLA-DMA-208ENST00000477541 BRPF1P55201 1214 aaPredicted RBP17.02■□□□□ 0.32
HLA-DMA-208ENST00000477541 SMC4Q9NTJ3 1288 aa17.02■□□□□ 0.32
HLA-DMA-208ENST00000477541 U2AF1L5P0DN76 240 aaPredicted RBP17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 XRCC6P12956 609 aaKnown RBP eCLIP17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 U2AF1Q01081 240 aaKnown RBP eCLIP17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 TRAK1Q9UPV9 953 aa17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 ABCC3O15438 1527 aa17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 NEXMIFQ5QGS0 1516 aa17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 PPIP5K1Q6PFW1 1433 aa17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 TRAK2O60296 914 aa17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 SKOR2Q2VWA4 1001 aaPredicted RBP17.01■□□□□ 0.31
HLA-DMA-208ENST00000477541 TRIM27P14373 513 aa17■□□□□ 0.31
HLA-DMA-208ENST00000477541 DDIT3P35638 169 aa17■□□□□ 0.31
HLA-DMA-208ENST00000477541 CFAP44Q96MT7 982 aa17■□□□□ 0.31
HLA-DMA-208ENST00000477541 PLEKHF1Q96S99 279 aa17■□□□□ 0.31
HLA-DMA-208ENST00000477541 TNNQ9UQP3 1299 aa17■□□□□ 0.31
HLA-DMA-208ENST00000477541 ATAD2Q6PL18 1390 aa16.99■□□□□ 0.31
HLA-DMA-208ENST00000477541 VGFO15240 615 aaPredicted RBP16.99■□□□□ 0.31
HLA-DMA-208ENST00000477541 TMPOP42166 694 aaKnown RBP16.99■□□□□ 0.31
HLA-DMA-208ENST00000477541 ZNF692Q9BU19 519 aaPredicted RBP16.99■□□□□ 0.31
HLA-DMA-208ENST00000477541 BCL2L13Q9BXK5 485 aa16.99■□□□□ 0.31
HLA-DMA-208ENST00000477541 RRAGDQ9NQL2 400 aaPredicted RBP16.99■□□□□ 0.31
HLA-DMA-208ENST00000477541 MFAP1P55081 439 aaKnown RBP16.98■□□□□ 0.31
HLA-DMA-208ENST00000477541 NUCB1Q02818 461 aa16.98■□□□□ 0.31
HLA-DMA-208ENST00000477541 GBP4Q96PP9 640 aa16.98■□□□□ 0.31
HLA-DMA-208ENST00000477541 ZBTB40Q9NUA8 1239 aa16.98■□□□□ 0.31
HLA-DMA-208ENST00000477541 ARHGAP31Q2M1Z3 1444 aa16.98■□□□□ 0.31
HLA-DMA-208ENST00000477541 TNNT2P45379 298 aaPredicted RBP16.97■□□□□ 0.31
HLA-DMA-208ENST00000477541 BMP2KLQ5H9B9 411 aa16.97■□□□□ 0.31
HLA-DMA-208ENST00000477541 KIF20BQ96Q89 1820 aa16.97■□□□□ 0.31
HLA-DMA-208ENST00000477541 EXOSC9Q06265 439 aaKnown RBP16.96■□□□□ 0.31
HLA-DMA-208ENST00000477541 ITPRIPQ8IWB1 547 aa16.96■□□□□ 0.31
HLA-DMA-208ENST00000477541 SSH1Q8WYL5 1049 aa16.96■□□□□ 0.31
HLA-DMA-208ENST00000477541 PNPLA6Q8IY17 1366 aa16.96■□□□□ 0.3
HLA-DMA-208ENST00000477541 PIK3R4Q99570 1358 aa16.96■□□□□ 0.3
HLA-DMA-208ENST00000477541 GCC1Q96CN9 775 aa16.95■□□□□ 0.3
HLA-DMA-208ENST00000477541 TRIM35Q9UPQ4 493 aa16.95■□□□□ 0.3
HLA-DMA-208ENST00000477541 UBAP1LF5GYI3 381 aa16.94■□□□□ 0.3
HLA-DMA-208ENST00000477541 ARHGAP45Q92619 1136 aa16.94■□□□□ 0.3
HLA-DMA-208ENST00000477541 A0A1W2PP64 1363 aa16.94■□□□□ 0.3
HLA-DMA-208ENST00000477541 C3P01024 1663 aa16.93■□□□□ 0.3
HLA-DMA-208ENST00000477541 CALD1Q05682 793 aaKnown RBP16.93■□□□□ 0.3
HLA-DMA-208ENST00000477541 GRPEL1Q9HAV7 217 aa16.93■□□□□ 0.3
HLA-DMA-208ENST00000477541 TERF2IPQ9NYB0 399 aa16.93■□□□□ 0.3
HLA-DMA-208ENST00000477541 PTCH1Q13635 1447 aa16.92■□□□□ 0.3
HLA-DMA-208ENST00000477541 IBTKQ9P2D0 1353 aaPredicted RBP16.92■□□□□ 0.3
HLA-DMA-208ENST00000477541 MED1Q15648 1581 aaPredicted RBP16.92■□□□□ 0.3
HLA-DMA-208ENST00000477541 CHGAP10645 457 aaKnown RBP16.92■□□□□ 0.3
HLA-DMA-208ENST00000477541 RAB3GAP1Q15042 981 aa16.92■□□□□ 0.3
HLA-DMA-208ENST00000477541 CHD1LQ86WJ1 897 aa16.92■□□□□ 0.3
HLA-DMA-208ENST00000477541 NOB1Q9ULX3 412 aaKnown RBP16.92■□□□□ 0.3
HLA-DMA-208ENST00000477541 CLEC17AQ6ZS10 378 aa16.91■□□□□ 0.3
HLA-DMA-208ENST00000477541 TMEM57Q8N5G2 664 aa16.91■□□□□ 0.3
HLA-DMA-208ENST00000477541 TSR2Q969E8 191 aaKnown RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms