RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 CFAP70Q5T0N1 1121 aa9.08□□□□□ -0.96
LDB3-206ENST00000477489 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.08□□□□□ -0.96
LDB3-206ENST00000477489 DLC1Q96QB1 1528 aa9.08□□□□□ -0.96
LDB3-206ENST00000477489 NINLQ9Y2I6 1382 aa9.08□□□□□ -0.96
LDB3-206ENST00000477489 MYBBP1AQ9BQG0 1328 aaKnown RBP9.07□□□□□ -0.96
LDB3-206ENST00000477489 CENPJQ9HC77 1338 aaPredicted RBP9.07□□□□□ -0.96
LDB3-206ENST00000477489 SETD1BQ9UPS6 1966 aaKnown RBP9.07□□□□□ -0.96
LDB3-206ENST00000477489 CEBPAP49715 358 aaPredicted RBP9.07□□□□□ -0.96
LDB3-206ENST00000477489 SLAIN1Q8ND83 568 aa9.07□□□□□ -0.96
LDB3-206ENST00000477489 USP32Q8NFA0 1604 aa9.06□□□□□ -0.96
LDB3-206ENST00000477489 PER1O15534 1290 aaPredicted RBP9.06□□□□□ -0.96
LDB3-206ENST00000477489 TNRQ92752 1358 aa9.06□□□□□ -0.96
LDB3-206ENST00000477489 ALKQ9UM73 1620 aa9.05□□□□□ -0.96
LDB3-206ENST00000477489 UBR1Q8IWV7 1749 aa9.05□□□□□ -0.96
LDB3-206ENST00000477489 MRS2Q9HD23 443 aa9.05□□□□□ -0.96
LDB3-206ENST00000477489 SETD1AO15047 1707 aaKnown RBP9.05□□□□□ -0.96
LDB3-206ENST00000477489 KNDC1Q76NI1 1749 aa9.05□□□□□ -0.96
LDB3-206ENST00000477489 ASXL1Q8IXJ9 1541 aa9.05□□□□□ -0.96
LDB3-206ENST00000477489 RIMS2Q9UQ26 1411 aa9.05□□□□□ -0.96
LDB3-206ENST00000477489 NLRP13Q86W25 1043 aa9.04□□□□□ -0.96
LDB3-206ENST00000477489 FAM163AQ96GL9 167 aaPredicted RBP9.04□□□□□ -0.96
LDB3-206ENST00000477489 L3MBTL3Q96JM7 780 aaPredicted RBP9.04□□□□□ -0.96
LDB3-206ENST00000477489 POLR3GLQ9BT43 218 aa9.04□□□□□ -0.96
LDB3-206ENST00000477489 POTEMA6NI47 508 aa9.03□□□□□ -0.96
LDB3-206ENST00000477489 HSPA1LP34931 641 aa9.03□□□□□ -0.96
LDB3-206ENST00000477489 LCE2DQ5TA82 110 aaPredicted RBP9.03□□□□□ -0.96
LDB3-206ENST00000477489 SIRT1Q96EB6 747 aa9.03□□□□□ -0.96
LDB3-206ENST00000477489 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.03□□□□□ -0.96
LDB3-206ENST00000477489 YTHDC2Q9H6S0 1430 aaKnown RBP9.03□□□□□ -0.96
LDB3-206ENST00000477489 C3P01024 1663 aa9.03□□□□□ -0.96
LDB3-206ENST00000477489 LRPPRCP42704 1394 aaKnown RBP9.02□□□□□ -0.97
LDB3-206ENST00000477489 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.02□□□□□ -0.97
LDB3-206ENST00000477489 FBXO31Q5XUX0 539 aaPredicted RBP9.02□□□□□ -0.97
LDB3-206ENST00000477489 POTEGQ6S5H5 508 aa9.02□□□□□ -0.97
LDB3-206ENST00000477489 ZFP91Q96JP5 570 aaPredicted RBP9.02□□□□□ -0.97
LDB3-206ENST00000477489 PANK3Q9H999 370 aa9.02□□□□□ -0.97
LDB3-206ENST00000477489 KNSTRNQ9Y448 316 aa9.02□□□□□ -0.97
LDB3-206ENST00000477489 ZBED9Q6R2W3 1325 aa9.02□□□□□ -0.97
LDB3-206ENST00000477489 EVC2Q86UK5 1308 aa9.02□□□□□ -0.97
LDB3-206ENST00000477489 TMEM2Q9UHN6 1383 aa9.01□□□□□ -0.97
LDB3-206ENST00000477489 SLIT1O75093 1534 aa9.01□□□□□ -0.97
LDB3-206ENST00000477489 TECPR2O15040 1411 aa9.01□□□□□ -0.97
LDB3-206ENST00000477489 DPY19L2Q6NUT2 758 aa9.01□□□□□ -0.97
LDB3-206ENST00000477489 EFCAB3Q8N7B9 438 aa9.01□□□□□ -0.97
LDB3-206ENST00000477489 NRXN3Q9Y4C0 1643 aa9.01□□□□□ -0.97
LDB3-206ENST00000477489 NSD2O96028 1365 aa9□□□□□ -0.97
LDB3-206ENST00000477489 ATAD2Q6PL18 1390 aa9□□□□□ -0.97
LDB3-206ENST00000477489 ABCC11Q96J66 1382 aa9□□□□□ -0.97
LDB3-206ENST00000477489 DIP2AQ14689 1571 aa9□□□□□ -0.97
LDB3-206ENST00000477489 C3orf67Q6ZVT6 689 aa9□□□□□ -0.97
LDB3-206ENST00000477489 TMC1Q8TDI8 760 aa9□□□□□ -0.97
LDB3-206ENST00000477489 ARHGAP23Q9P227 1491 aa9□□□□□ -0.97
LDB3-206ENST00000477489 ZNF335Q9H4Z2 1342 aaPredicted RBP9□□□□□ -0.97
LDB3-206ENST00000477489 FAM135BQ49AJ0 1406 aa8.99□□□□□ -0.97
LDB3-206ENST00000477489 ECM2O94769 699 aaPredicted RBP8.99□□□□□ -0.97
LDB3-206ENST00000477489 AMER1Q5JTC6 1135 aaPredicted RBP8.99□□□□□ -0.97
LDB3-206ENST00000477489 PNISRQ8TF01 805 aaKnown RBP8.99□□□□□ -0.97
LDB3-206ENST00000477489 GTF3C3Q9Y5Q9 886 aa8.99□□□□□ -0.97
LDB3-206ENST00000477489 CPS1P31327 1500 aa8.99□□□□□ -0.97
LDB3-206ENST00000477489 TULP4Q9NRJ4 1543 aa8.99□□□□□ -0.97
LDB3-206ENST00000477489 PLEKHG1Q9ULL1 1385 aa8.99□□□□□ -0.97
LDB3-206ENST00000477489 HNRNPUQ00839 825 aaKnown RBP eCLIP8.98□□□□□ -0.97
LDB3-206ENST00000477489 TRAK1Q9UPV9 953 aa8.98□□□□□ -0.97
LDB3-206ENST00000477489 ANKRD36BQ8N2N9 1353 aa8.98□□□□□ -0.97
LDB3-206ENST00000477489 ZNF142P52746 1687 aaPredicted RBP8.97□□□□□ -0.97
LDB3-206ENST00000477489 PIP4K2BP78356 416 aa8.97□□□□□ -0.97
LDB3-206ENST00000477489 TAOK2Q9UL54 1235 aa8.97□□□□□ -0.97
LDB3-206ENST00000477489 MED14O60244 1454 aa8.96□□□□□ -0.97
LDB3-206ENST00000477489 ADGRB2O60241 1585 aa8.96□□□□□ -0.97
LDB3-206ENST00000477489 TMEM132EQ6IEE7 984 aa8.96□□□□□ -0.98
LDB3-206ENST00000477489 BLMP54132 1417 aaPredicted RBP8.96□□□□□ -0.98
LDB3-206ENST00000477489 ANKRD26Q9UPS8 1709 aa8.95□□□□□ -0.98
LDB3-206ENST00000477489 CCDC184Q52MB2 194 aa8.95□□□□□ -0.98
LDB3-206ENST00000477489 THEMISQ8N1K5 641 aaPredicted RBP8.95□□□□□ -0.98
LDB3-206ENST00000477489 NGEFQ8N5V2 710 aa8.95□□□□□ -0.98
LDB3-206ENST00000477489 BOLA1Q9Y3E2 137 aa8.95□□□□□ -0.98
LDB3-206ENST00000477489 CGNL1Q0VF96 1302 aa8.95□□□□□ -0.98
LDB3-206ENST00000477489 PIK3R4Q99570 1358 aa8.95□□□□□ -0.98
LDB3-206ENST00000477489 ATP7BP35670 1465 aa8.95□□□□□ -0.98
LDB3-206ENST00000477489 G3V3G9 751 aa8.94□□□□□ -0.98
LDB3-206ENST00000477489 SOX12O15370 315 aa8.94□□□□□ -0.98
LDB3-206ENST00000477489 PDE3BQ13370 1112 aa8.94□□□□□ -0.98
LDB3-206ENST00000477489 ERICH6BQ5W0A0 696 aa8.94□□□□□ -0.98
LDB3-206ENST00000477489 FAM9BQ8IZU0 186 aa8.94□□□□□ -0.98
LDB3-206ENST00000477489 POGKQ9P215 609 aa8.94□□□□□ -0.98
LDB3-206ENST00000477489 EID1Q9Y6B2 187 aa8.94□□□□□ -0.98
LDB3-206ENST00000477489 CEP170BQ9Y4F5 1589 aaPredicted RBP8.94□□□□□ -0.98
LDB3-206ENST00000477489 BCL11BQ9C0K0 894 aaPredicted RBP8.93□□□□□ -0.98
LDB3-206ENST00000477489 TERF2IPQ9NYB0 399 aa8.93□□□□□ -0.98
LDB3-206ENST00000477489 NCKAP5LQ9HCH0 1330 aa8.93□□□□□ -0.98
LDB3-206ENST00000477489 POLR3AO14802 1390 aaPredicted RBP8.93□□□□□ -0.98
LDB3-206ENST00000477489 ADAMTS13Q76LX8 1427 aa8.93□□□□□ -0.98
LDB3-206ENST00000477489 PTCH1Q13635 1447 aa8.92□□□□□ -0.98
LDB3-206ENST00000477489 SMG6Q86US8 1419 aaKnown RBP8.92□□□□□ -0.98
LDB3-206ENST00000477489 NSD3Q9BZ95 1437 aa8.92□□□□□ -0.98
LDB3-206ENST00000477489 SNPHO15079 494 aa8.92□□□□□ -0.98
LDB3-206ENST00000477489 RGL2O15211 777 aa8.92□□□□□ -0.98
LDB3-206ENST00000477489 ST18O60284 1047 aa8.92□□□□□ -0.98
LDB3-206ENST00000477489 PPP2R1AP30153 589 aa8.92□□□□□ -0.98
LDB3-206ENST00000477489 CC2D1BQ5T0F9 858 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms