RNA–Protein interactions for RNA: ENST00000476772.5

VEGFA-211, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 1,683 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-211ENST00000476772 CENPBP07199 599 aaPredicted RBP38.81■■■■□ 3.8
VEGFA-211ENST00000476772 PHF8Q9UPP1 1060 aa38.81■■■■□ 3.8
VEGFA-211ENST00000476772 LRRC7Q96NW7 1537 aa38.81■■■■□ 3.8
VEGFA-211ENST00000476772 DCCP43146 1447 aa38.81■■■■□ 3.8
VEGFA-211ENST00000476772 ESCO1Q5FWF5 840 aa38.78■■■■□ 3.8
VEGFA-211ENST00000476772 ZRANB1Q9UGI0 708 aa38.76■■■■□ 3.8
VEGFA-211ENST00000476772 C1orf167Q5SNV9 1468 aa38.75■■■■□ 3.79
VEGFA-211ENST00000476772 ATF3P18847 181 aa38.74■■■■□ 3.79
VEGFA-211ENST00000476772 MSH6P52701 1360 aa38.74■■■■□ 3.79
VEGFA-211ENST00000476772 HNRNPUQ00839 825 aaKnown RBP eCLIP38.73■■■■□ 3.79
VEGFA-211ENST00000476772 MST1RQ04912 1400 aa38.73■■■■□ 3.79
VEGFA-211ENST00000476772 TTC21AQ8NDW8 1320 aa38.72■■■■□ 3.79
VEGFA-211ENST00000476772 ORAI2Q96SN7 254 aa38.71■■■■□ 3.79
VEGFA-211ENST00000476772 MTHFSP49914 203 aa38.71■■■■□ 3.79
VEGFA-211ENST00000476772 COG3Q96JB2 828 aa38.71■■■■□ 3.79
VEGFA-211ENST00000476772 CADPS2Q86UW7 1296 aa38.68■■■■□ 3.78
VEGFA-211ENST00000476772 OVOS2A0A0J9YW53 1432 aa38.67■■■■□ 3.78
VEGFA-211ENST00000476772 OVOS2Q6IE36 1432 aa38.67■■■■□ 3.78
VEGFA-211ENST00000476772 KIF1AQ12756 1690 aa38.67■■■■□ 3.78
VEGFA-211ENST00000476772 SCAF1Q9H7N4 1312 aaKnown RBP38.67■■■■□ 3.78
VEGFA-211ENST00000476772 PIK3C2AO00443 1686 aa38.66■■■■□ 3.78
VEGFA-211ENST00000476772 WDR43Q15061 677 aaKnown RBP eCLIP38.62■■■■□ 3.771e-11■□□□□ 9.3
VEGFA-211ENST00000476772 SHPRHQ149N8 1683 aa38.61■■■■□ 3.77
VEGFA-211ENST00000476772 FBLN1P23142 703 aa38.6■■■■□ 3.77
VEGFA-211ENST00000476772 CFAP53Q96M91 514 aa38.6■■■■□ 3.77
VEGFA-211ENST00000476772 MAP2P11137 1827 aaKnown RBP38.59■■■■□ 3.77
VEGFA-211ENST00000476772 PSME1Q06323 249 aa38.58■■■■□ 3.77
VEGFA-211ENST00000476772 ADAMTS8Q9UP79 889 aa38.58■■■■□ 3.77
VEGFA-211ENST00000476772 INSRP06213 1382 aa38.58■■■■□ 3.77
VEGFA-211ENST00000476772 AATKQ6ZMQ8 1374 aa38.58■■■■□ 3.77
VEGFA-211ENST00000476772 USP31Q70CQ4 1352 aa38.58■■■■□ 3.77
VEGFA-211ENST00000476772 FOXO3O43524 673 aa38.57■■■■□ 3.76
VEGFA-211ENST00000476772 BLMP54132 1417 aaPredicted RBP38.56■■■■□ 3.76
VEGFA-211ENST00000476772 PAK3O75914 559 aaPredicted RBP38.55■■■■□ 3.76
VEGFA-211ENST00000476772 POLKQ9UBT6 870 aa38.55■■■■□ 3.76
VEGFA-211ENST00000476772 USP54Q70EL1 1684 aa38.54■■■■□ 3.76
VEGFA-211ENST00000476772 COL3A1P02461 1466 aaPredicted RBP38.54■■■■□ 3.76
VEGFA-211ENST00000476772 MARF1Q9Y4F3 1742 aaKnown RBP38.53■■■■□ 3.76
VEGFA-211ENST00000476772 SMG6Q86US8 1419 aaKnown RBP38.52■■■■□ 3.76
VEGFA-211ENST00000476772 ABTB2Q8N961 1025 aa38.5■■■■□ 3.75
VEGFA-211ENST00000476772 TRPM3Q9HCF6 1732 aaPredicted RBP38.49■■■■□ 3.75
VEGFA-211ENST00000476772 NLRP6P59044 892 aa38.49■■■■□ 3.75
VEGFA-211ENST00000476772 XPCQ01831 940 aaPredicted RBP38.49■■■■□ 3.75
VEGFA-211ENST00000476772 EMILIN1Q9Y6C2 1016 aa38.49■■■■□ 3.75
VEGFA-211ENST00000476772 PNPLA6Q8IY17 1366 aa38.49■■■■□ 3.75
VEGFA-211ENST00000476772 ZBED9Q6R2W3 1325 aa38.48■■■■□ 3.75
VEGFA-211ENST00000476772 RRS1Q15050 365 aaKnown RBP38.47■■■■□ 3.75
VEGFA-211ENST00000476772 NUTM2GQ5VZR2 741 aa38.47■■■■□ 3.75
VEGFA-211ENST00000476772 LTBP4Q8N2S1 1624 aa38.47■■■■□ 3.75
VEGFA-211ENST00000476772 PPM1GO15355 546 aaPredicted RBP38.46■■■■□ 3.75
VEGFA-211ENST00000476772 SENP3-EIF4A1A0A087X0R7 540 aa38.46■■■■□ 3.75
VEGFA-211ENST00000476772 KRT28Q7Z3Y7 464 aa38.46■■■■□ 3.75
VEGFA-211ENST00000476772 CDK12Q9NYV4 1490 aaPredicted RBP38.45■■■■□ 3.75
VEGFA-211ENST00000476772 SOX12O15370 315 aa38.42■■■■□ 3.74
VEGFA-211ENST00000476772 SLAIN2Q9P270 581 aa38.41■■■■□ 3.74
VEGFA-211ENST00000476772 BRINP3Q76B58 766 aa38.39■■■■□ 3.74
VEGFA-211ENST00000476772 DDX17Q92841 729 aaKnown RBP38.39■■■■□ 3.74
VEGFA-211ENST00000476772 DIAPH1O60610 1272 aaKnown RBP38.38■■■■□ 3.73
VEGFA-211ENST00000476772 NPHP3Q7Z494 1330 aa38.37■■■■□ 3.73
VEGFA-211ENST00000476772 PEAK1Q9H792 1746 aa38.37■■■■□ 3.73
VEGFA-211ENST00000476772 NUDCQ9Y266 331 aa38.36■■■■□ 3.73
VEGFA-211ENST00000476772 CCDC146Q8IYE0 955 aa38.36■■■■□ 3.73
VEGFA-211ENST00000476772 ALS2Q96Q42 1657 aa38.35■■■■□ 3.73
VEGFA-211ENST00000476772 AEBP2Q6ZN18 517 aaPredicted RBP38.35■■■■□ 3.73
VEGFA-211ENST00000476772 PXDNQ92626 1479 aa38.33■■■■□ 3.73
VEGFA-211ENST00000476772 MAP3K19Q56UN5 1328 aa38.32■■■■□ 3.73
VEGFA-211ENST00000476772 U2SURPO15042 1029 aaKnown RBP38.32■■■■□ 3.72
VEGFA-211ENST00000476772 U2AF1L5P0DN76 240 aaPredicted RBP38.32■■■■□ 3.72
VEGFA-211ENST00000476772 U2AF1Q01081 240 aaKnown RBP eCLIP38.32■■■■□ 3.722e-10■□□□□ 9.4
VEGFA-211ENST00000476772 LMOD2Q6P5Q4 547 aa38.3■■■■□ 3.72
VEGFA-211ENST00000476772 SBNO1A3KN83 1393 aa38.3■■■■□ 3.72
VEGFA-211ENST00000476772 SALL2Q9Y467 1007 aaPredicted RBP38.29■■■■□ 3.72
VEGFA-211ENST00000476772 NFAT5O94916 1531 aa38.27■■■■□ 3.72
VEGFA-211ENST00000476772 SLIT3O75094 1523 aa38.27■■■■□ 3.72
VEGFA-211ENST00000476772 IL13P35225 146 aa38.26■■■■□ 3.71
VEGFA-211ENST00000476772 TNS3Q68CZ2 1445 aa38.24■■■■□ 3.71
VEGFA-211ENST00000476772 FLT4P35916 1363 aa38.24■■■■□ 3.71
VEGFA-211ENST00000476772 USP19O94966 1318 aa38.23■■■■□ 3.71
VEGFA-211ENST00000476772 LTN1O94822 1766 aa38.22■■■■□ 3.71
VEGFA-211ENST00000476772 RUNDC1Q96C34 613 aa38.22■■■■□ 3.71
VEGFA-211ENST00000476772 APAF1O14727 1248 aa38.21■■■■□ 3.71
VEGFA-211ENST00000476772 HSP90AB2PQ58FF8 381 aa38.21■■■■□ 3.71
VEGFA-211ENST00000476772 KCNH5Q8NCM2 988 aa38.21■■■■□ 3.71
VEGFA-211ENST00000476772 AMPHP49418 695 aa38.2■■■■□ 3.71
VEGFA-211ENST00000476772 NHSL1Q5SYE7 1610 aa38.19■■■■□ 3.7
VEGFA-211ENST00000476772 KIF24Q5T7B8 1368 aa38.19■■■■□ 3.7
VEGFA-211ENST00000476772 SPATA31A3Q5VYP0 1347 aa38.18■■■■□ 3.7
VEGFA-211ENST00000476772 IQSEC2Q5JU85 1478 aa38.18■■■■□ 3.7
VEGFA-211ENST00000476772 EIF4A2Q14240 407 aaKnown RBP38.18■■■■□ 3.7
VEGFA-211ENST00000476772 PLEKHG5O94827 1062 aa38.17■■■■□ 3.7
VEGFA-211ENST00000476772 MED1Q15648 1581 aaPredicted RBP38.17■■■■□ 3.7
VEGFA-211ENST00000476772 SOS2Q07890 1332 aaPredicted RBP38.17■■■■□ 3.7
VEGFA-211ENST00000476772 GCP02774 474 aa38.16■■■■□ 3.7
VEGFA-211ENST00000476772 RTL1A6NKG5 1358 aa38.14■■■■□ 3.7
VEGFA-211ENST00000476772 HOXC9P31274 260 aa38.14■■■■□ 3.7
VEGFA-211ENST00000476772 PLEKHF1Q96S99 279 aa38.14■■■■□ 3.7
VEGFA-211ENST00000476772 ARHGEF10O15013 1369 aa38.12■■■■□ 3.69
VEGFA-211ENST00000476772 PHRF1Q9P1Y6 1649 aaKnown RBP38.12■■■■□ 3.69
VEGFA-211ENST00000476772 ROBO1Q9Y6N7 1651 aa38.11■■■■□ 3.69
VEGFA-211ENST00000476772 RGPD1P0DJD0 1748 aa38.11■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms