RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 ABL2P42684 1182 aa11.66□□□□□ -0.54
CLK1-209ENST00000472679 RAD21O60216 631 aa11.65□□□□□ -0.54
CLK1-209ENST00000472679 LIAT1Q6ZQX7 453 aa11.65□□□□□ -0.54
CLK1-209ENST00000472679 IRF5Q13568 498 aa11.64□□□□□ -0.55
CLK1-209ENST00000472679 A6NJR5 290 aa11.63□□□□□ -0.55
CLK1-209ENST00000472679 BAP1Q92560 729 aa11.63□□□□□ -0.55
CLK1-209ENST00000472679 PRM3Q9NNZ6 103 aa11.63□□□□□ -0.55
CLK1-209ENST00000472679 LINC01559Q495D7 138 aa11.62□□□□□ -0.55
CLK1-209ENST00000472679 ZBTB24O43167 697 aaPredicted RBP11.61□□□□□ -0.55
CLK1-209ENST00000472679 ERICH6Q7L0X2 663 aa11.61□□□□□ -0.55
CLK1-209ENST00000472679 FNBP4Q8N3X1 1017 aaPredicted RBP11.61□□□□□ -0.55
CLK1-209ENST00000472679 TRIM32Q13049 653 aa11.6□□□□□ -0.55
CLK1-209ENST00000472679 PROSER2Q86WR7 435 aaPredicted RBP11.6□□□□□ -0.55
CLK1-209ENST00000472679 ARMC2Q8NEN0 867 aa11.6□□□□□ -0.55
CLK1-209ENST00000472679 RPIAP49247 311 aa11.59□□□□□ -0.55
CLK1-209ENST00000472679 PNMA1Q8ND90 353 aa11.59□□□□□ -0.55
CLK1-209ENST00000472679 SLC19A1P41440 591 aa11.58□□□□□ -0.56
CLK1-209ENST00000472679 SH3BP2P78314 561 aa11.58□□□□□ -0.56
CLK1-209ENST00000472679 SKOR1P84550 965 aa11.58□□□□□ -0.56
CLK1-209ENST00000472679 FOXJ1Q92949 421 aa11.58□□□□□ -0.56
CLK1-209ENST00000472679 OCSTAMPQ9BR26 566 aa11.58□□□□□ -0.56
CLK1-209ENST00000472679 ZC3H4Q9UPT8 1303 aaKnown RBP11.58□□□□□ -0.56
CLK1-209ENST00000472679 NBPF14Q5TI25 921 aa11.57□□□□□ -0.56
CLK1-209ENST00000472679 ZNF511Q8NB15 262 aa11.57□□□□□ -0.56
CLK1-209ENST00000472679 TRAK2O60296 914 aa11.56□□□□□ -0.56
CLK1-209ENST00000472679 PDXDC2PQ6P474 469 aa11.56□□□□□ -0.56
CLK1-209ENST00000472679 FBXO45P0C2W1 286 aa11.55□□□□□ -0.56
CLK1-209ENST00000472679 VAC14Q08AM6 782 aa11.55□□□□□ -0.56
CLK1-209ENST00000472679 SH3BP5LQ7L8J4 393 aa11.55□□□□□ -0.56
CLK1-209ENST00000472679 GPKOWQ92917 476 aaPredicted RBP eCLIP11.55□□□□□ -0.56
CLK1-209ENST00000472679 PRKD2Q9BZL6 878 aa11.55□□□□□ -0.56
CLK1-209ENST00000472679 CD2BP2O95400 341 aaKnown RBP11.54□□□□□ -0.56
CLK1-209ENST00000472679 C4orf48Q5BLP8 95 aa11.54□□□□□ -0.56
CLK1-209ENST00000472679 POM121CA8CG34 1229 aa11.53□□□□□ -0.56
CLK1-209ENST00000472679 ZBBXA8MT70 800 aa11.53□□□□□ -0.56
CLK1-209ENST00000472679 SPRYD7Q5W111 196 aa11.53□□□□□ -0.56
CLK1-209ENST00000472679 ZNF330Q9Y3S2 320 aaPredicted RBP11.53□□□□□ -0.56
CLK1-209ENST00000472679 PTK2Q05397 1052 aa11.52□□□□□ -0.57
CLK1-209ENST00000472679 SH3RF1Q7Z6J0 888 aa11.52□□□□□ -0.57
CLK1-209ENST00000472679 ARHGAP9Q9BRR9 750 aa11.52□□□□□ -0.57
CLK1-209ENST00000472679 WNT7BP56706 349 aa11.51□□□□□ -0.57
CLK1-209ENST00000472679 NR1H3Q13133 447 aa11.51□□□□□ -0.57
CLK1-209ENST00000472679 CARD14Q9BXL6 1004 aa11.51□□□□□ -0.57
CLK1-209ENST00000472679 GPSM3Q9Y4H4 160 aa11.51□□□□□ -0.57
CLK1-209ENST00000472679 MAGEB6P1A0A0J9YX57 407 aa11.5□□□□□ -0.57
CLK1-209ENST00000472679 AGERQ15109 404 aa11.5□□□□□ -0.57
CLK1-209ENST00000472679 WASHC4Q2M389 1173 aa11.5□□□□□ -0.57
CLK1-209ENST00000472679 ZNF777Q9ULD5 760 aaPredicted RBP11.5□□□□□ -0.57
CLK1-209ENST00000472679 SUPT5HO00267 1087 aaKnown RBP11.49□□□□□ -0.57
CLK1-209ENST00000472679 BPHLQ86WA6 291 aaPredicted RBP11.49□□□□□ -0.57
CLK1-209ENST00000472679 WWC1Q8IX03 1113 aa11.49□□□□□ -0.57
CLK1-209ENST00000472679 ADAM32Q8TC27 787 aa11.49□□□□□ -0.57
CLK1-209ENST00000472679 V9GY48 417 aaPredicted RBP11.49□□□□□ -0.57
CLK1-209ENST00000472679 RC3H1Q5TC82 1133 aaKnown RBP11.48□□□□□ -0.57
CLK1-209ENST00000472679 ARID3CA6NKF2 412 aa11.47□□□□□ -0.57
CLK1-209ENST00000472679 ZNF697Q5TEC3 545 aa11.47□□□□□ -0.57
CLK1-209ENST00000472679 ZBTB33Q86T24 672 aa11.47□□□□□ -0.57
CLK1-209ENST00000472679 ZNF598Q86UK7 904 aaKnown RBP11.47□□□□□ -0.57
CLK1-209ENST00000472679 ERFEQ4G0M1 354 aa11.46□□□□□ -0.57
CLK1-209ENST00000472679 ADAMTS19Q8TE59 1207 aa11.46□□□□□ -0.57
CLK1-209ENST00000472679 C1QTNF2Q9BXJ5 285 aa11.46□□□□□ -0.57
CLK1-209ENST00000472679 EHBP1Q8NDI1 1231 aa11.44□□□□□ -0.58
CLK1-209ENST00000472679 PKD2L1Q9P0L9 805 aa11.44□□□□□ -0.58
CLK1-209ENST00000472679 WNT7AO00755 349 aa11.43□□□□□ -0.58
CLK1-209ENST00000472679 VARSP26640 1264 aaKnown RBP11.43□□□□□ -0.58
CLK1-209ENST00000472679 FOXC1Q12948 553 aa11.43□□□□□ -0.58
CLK1-209ENST00000472679 MRGPRX2Q96LB1 330 aa11.43□□□□□ -0.58
CLK1-209ENST00000472679 ALG2Q9H553 416 aa11.43□□□□□ -0.58
CLK1-209ENST00000472679 C1orf115Q9H7X2 142 aa11.43□□□□□ -0.58
CLK1-209ENST00000472679 PCDHB9Q9Y5E1 797 aa11.43□□□□□ -0.58
CLK1-209ENST00000472679 SIAH2O43255 324 aa11.41□□□□□ -0.58
CLK1-209ENST00000472679 EIF4G2P78344 907 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLK1-209ENST00000472679 HDGFL1Q5TGJ6 251 aa11.41□□□□□ -0.58
CLK1-209ENST00000472679 TRMT44Q8IYL2 757 aaKnown RBP11.4□□□□□ -0.58
CLK1-209ENST00000472679 FAM174AQ8TBP5 190 aa11.4□□□□□ -0.58
CLK1-209ENST00000472679 GLMNQ92990 594 aa11.4□□□□□ -0.58
CLK1-209ENST00000472679 GDF9O60383 454 aa11.39□□□□□ -0.59
CLK1-209ENST00000472679 TRIM67Q6ZTA4 783 aa11.39□□□□□ -0.59
CLK1-209ENST00000472679 DZIP3Q86Y13 1208 aaKnown RBP11.39□□□□□ -0.59
CLK1-209ENST00000472679 TLL2Q9Y6L7 1015 aa11.39□□□□□ -0.59
CLK1-209ENST00000472679 RGS20O76081 388 aa11.38□□□□□ -0.59
CLK1-209ENST00000472679 SEMA3FQ13275 785 aa11.38□□□□□ -0.59
CLK1-209ENST00000472679 TNFRSF10AO00220 468 aa11.37□□□□□ -0.59
CLK1-209ENST00000472679 SOX11P35716 441 aa11.37□□□□□ -0.59
CLK1-209ENST00000472679 SLC10A4Q96EP9 437 aa11.37□□□□□ -0.59
CLK1-209ENST00000472679 ARID5BQ14865 1188 aa11.36□□□□□ -0.59
CLK1-209ENST00000472679 CALR3Q96L12 384 aaKnown RBP11.36□□□□□ -0.59
CLK1-209ENST00000472679 CDK15Q96Q40 435 aa11.35□□□□□ -0.59
CLK1-209ENST00000472679 CEP126Q9P2H0 1117 aa11.35□□□□□ -0.59
CLK1-209ENST00000472679 GIGYF1O75420 1035 aaPredicted RBP11.33□□□□□ -0.6
CLK1-209ENST00000472679 GRM5P41594 1212 aa11.33□□□□□ -0.6
CLK1-209ENST00000472679 MCCD1P59942 119 aaPredicted RBP11.33□□□□□ -0.6
CLK1-209ENST00000472679 VASH1Q7L8A9 365 aaPredicted RBP11.33□□□□□ -0.6
CLK1-209ENST00000472679 PIK3CDO00329 1044 aa11.32□□□□□ -0.6
CLK1-209ENST00000472679 MPNDQ8N594 471 aa11.32□□□□□ -0.6
CLK1-209ENST00000472679 UCN2Q96RP3 112 aa11.32□□□□□ -0.6
CLK1-209ENST00000472679 KCTD15Q96SI1 283 aaPredicted RBP11.32□□□□□ -0.6
CLK1-209ENST00000472679 MAP4K5Q9Y4K4 846 aa11.32□□□□□ -0.6
CLK1-209ENST00000472679 ALDH1A1P00352 501 aa11.31□□□□□ -0.6
CLK1-209ENST00000472679 SNIP1Q8TAD8 396 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms