RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 RDH13Q8NBN7 331 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 KIAA1468Q9P260 1216 aa6.63□□□□□ -1.35
COL3A1-205ENST00000470167 ERBB3P21860 1342 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 NRDCO43847 1150 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 RFC5P40937 340 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 MYBPC2Q14324 1141 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 SETDB1Q15047 1291 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 CSPP1Q1MSJ5 1256 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 VARS2Q5ST30 1063 aaKnown RBP6.62□□□□□ -1.35
COL3A1-205ENST00000470167 POTEEQ6S8J3 1075 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 NUTM1Q86Y26 1132 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 FAM9BQ8IZU0 186 aa6.62□□□□□ -1.35
COL3A1-205ENST00000470167 GEMIN8Q9NWZ8 242 aaKnown RBP6.62□□□□□ -1.35
COL3A1-205ENST00000470167 MOXD2PA6NHM9 499 aa6.61□□□□□ -1.35
COL3A1-205ENST00000470167 DMRTA1Q5VZB9 504 aa6.61□□□□□ -1.35
COL3A1-205ENST00000470167 RSBN1LQ6PCB5 846 aaPredicted RBP6.61□□□□□ -1.35
COL3A1-205ENST00000470167 SEPT9Q9UHD8 586 aaPredicted RBP6.61□□□□□ -1.35
COL3A1-205ENST00000470167 AXIN2Q9Y2T1 843 aa6.61□□□□□ -1.35
COL3A1-205ENST00000470167 NDUFV2P19404 249 aa6.6□□□□□ -1.35
COL3A1-205ENST00000470167 CDAN1Q8IWY9 1227 aa6.6□□□□□ -1.35
COL3A1-205ENST00000470167 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.6□□□□□ -1.35
COL3A1-205ENST00000470167 SDR16C5Q8N3Y7 309 aa6.6□□□□□ -1.35
COL3A1-205ENST00000470167 POM121Q96HA1 1249 aa6.6□□□□□ -1.35
COL3A1-205ENST00000470167 BSDC1Q9NW68 430 aaPredicted RBP6.6□□□□□ -1.35
COL3A1-205ENST00000470167 IGF1RP08069 1367 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 A6NJR5 290 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 ARHGAP33O14559 1287 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 SPTLC1O15269 473 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 ST18O60284 1047 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 MFAP1P55081 439 aaKnown RBP6.59□□□□□ -1.35
COL3A1-205ENST00000470167 SEMA3FQ13275 785 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 CDCA8Q53HL2 280 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 SWT1Q5T5J6 900 aaKnown RBP6.59□□□□□ -1.35
COL3A1-205ENST00000470167 NBPF10Q6P3W6 841 aaKnown RBP6.59□□□□□ -1.35
COL3A1-205ENST00000470167 NME8Q8N427 588 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 MAP7D2Q96T17 732 aa6.59□□□□□ -1.35
COL3A1-205ENST00000470167 SPDYE5A6NIY4 337 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 APBB1O00213 710 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 KIF20AO95235 890 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 EMP3P54852 163 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 QPCTQ16769 361 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 TMCO4Q5TGY1 634 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 PPP2R2DQ66LE6 453 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 MARVELD3Q96A59 401 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 TSPAN18Q96SJ8 248 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 TRAIPQ9BWF2 469 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 SNRKQ9NRH2 765 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 TERF2IPQ9NYB0 399 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 RAI14Q9P0K7 980 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 RABGEF1Q9UJ41 708 aa6.58□□□□□ -1.36
COL3A1-205ENST00000470167 TRAK2O60296 914 aa6.57□□□□□ -1.36
COL3A1-205ENST00000470167 SLC10A3P09131 477 aa6.57□□□□□ -1.36
COL3A1-205ENST00000470167 ERCC3P19447 782 aa6.57□□□□□ -1.36
COL3A1-205ENST00000470167 TUSC1Q2TAM9 212 aa6.57□□□□□ -1.36
COL3A1-205ENST00000470167 PCDHB15Q9Y5E8 787 aa6.57□□□□□ -1.36
COL3A1-205ENST00000470167 GOLIM4O00461 696 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 HOXA2O43364 376 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 TPM2P07951 284 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 CALRP27797 417 aaKnown RBP6.56□□□□□ -1.36
COL3A1-205ENST00000470167 GCGRP47871 477 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 GUCA2AQ02747 115 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 DMTNQ08495 405 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 FOXD4L6Q3SYB3 417 aaPredicted RBP6.56□□□□□ -1.36
COL3A1-205ENST00000470167 NBPF6Q5VWK0 638 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 FOXD4L3Q6VB84 417 aaPredicted RBP6.56□□□□□ -1.36
COL3A1-205ENST00000470167 PROSER2Q86WR7 435 aaPredicted RBP6.56□□□□□ -1.36
COL3A1-205ENST00000470167 NBPF5PQ86XG9 351 aaPredicted RBP6.56□□□□□ -1.36
COL3A1-205ENST00000470167 BANK1Q8NDB2 785 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 CABLES1Q8TDN4 633 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 HLA-CQ95604 372 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 NBPF4Q96M43 638 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 SLC4A5Q9BY07 1137 aa6.56□□□□□ -1.36
COL3A1-205ENST00000470167 ZCCHC6Q5VYS8 1495 aaKnown RBP6.55□□□□□ -1.36
COL3A1-205ENST00000470167 LILRB3O75022 631 aa6.55□□□□□ -1.36
COL3A1-205ENST00000470167 BRD1O95696 1058 aa6.55□□□□□ -1.36
COL3A1-205ENST00000470167 MAP2K1Q02750 393 aaPredicted RBP6.55□□□□□ -1.36
COL3A1-205ENST00000470167 MTA1Q13330 715 aa6.55□□□□□ -1.36
COL3A1-205ENST00000470167 FAM98CQ17RN3 349 aaKnown RBP6.55□□□□□ -1.36
COL3A1-205ENST00000470167 ANKRD23Q86SG2 305 aa6.55□□□□□ -1.36
COL3A1-205ENST00000470167 MYH16Q9H6N6 1097 aa6.55□□□□□ -1.36
COL3A1-205ENST00000470167 FEZ2Q9UHY8 353 aaPredicted RBP6.55□□□□□ -1.36
COL3A1-205ENST00000470167 VPS9D1Q9Y2B5 631 aa6.55□□□□□ -1.36
COL3A1-205ENST00000470167 COG6Q9Y2V7 657 aa6.55□□□□□ -1.36
COL3A1-205ENST00000470167 GOLGA6L3A6NEY3 463 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 FAM205CA6NFA0 338 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 VGLL3A8MV65 326 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 RNF40O75150 1001 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 ARID4AP29374 1257 aaPredicted RBP6.54□□□□□ -1.36
COL3A1-205ENST00000470167 GJA5P36382 358 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 PBX2P40425 430 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 USP46P62068 366 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 HDAC1Q13547 482 aaPredicted RBP6.54□□□□□ -1.36
COL3A1-205ENST00000470167 ZKSCAN8Q15776 578 aaPredicted RBP6.54□□□□□ -1.36
COL3A1-205ENST00000470167 TMEM259Q4ZIN3 620 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 SAMD7Q7Z3H4 446 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 MTMR14Q8NCE2 650 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 NUB1Q9Y5A7 615 aa6.54□□□□□ -1.36
COL3A1-205ENST00000470167 NUTM2BA6NNL0 878 aaPredicted RBP6.53□□□□□ -1.36
COL3A1-205ENST00000470167 NUTM2EB1AL46 878 aaPredicted RBP6.53□□□□□ -1.36
COL3A1-205ENST00000470167 AP1G2O75843 785 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms