RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 KDM4AO75164 1064 aa8.39□□□□□ -1.07
VPS41-211ENST00000466017 NDUFV2P19404 249 aa8.39□□□□□ -1.07
VPS41-211ENST00000466017 ATP6V1AP38606 617 aa8.39□□□□□ -1.07
VPS41-211ENST00000466017 FAM160A2Q8N612 972 aaPredicted RBP8.39□□□□□ -1.07
VPS41-211ENST00000466017 SPIRE2Q8WWL2 714 aa8.39□□□□□ -1.07
VPS41-211ENST00000466017 ERCC6L2Q5T890 1561 aa8.39□□□□□ -1.07
VPS41-211ENST00000466017 NECTIN2Q92692 538 aa8.38□□□□□ -1.07
VPS41-211ENST00000466017 BEGAINQ9BUH8 593 aa8.38□□□□□ -1.07
VPS41-211ENST00000466017 ATP1B4Q9UN42 357 aaPredicted RBP8.38□□□□□ -1.07
VPS41-211ENST00000466017 PCDHGC3Q9UN70 934 aa8.38□□□□□ -1.07
VPS41-211ENST00000466017 ATP10BO94823 1461 aa8.38□□□□□ -1.07
VPS41-211ENST00000466017 CFAP43Q8NDM7 1665 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 PLEKHD1A6NEE1 506 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 HOXA2O43364 376 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 S1PR4O95977 384 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 RSPH4AQ5TD94 716 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 PRR14Q9BWN1 585 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 PRDM9Q9NQV7 894 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 ABCC2Q92887 1545 aa8.37□□□□□ -1.07
VPS41-211ENST00000466017 MTUS2Q5JR59 1369 aa8.36□□□□□ -1.07
VPS41-211ENST00000466017 KDM5BQ9UGL1 1544 aa8.36□□□□□ -1.07
VPS41-211ENST00000466017 MOXD2PA6NHM9 499 aa8.36□□□□□ -1.07
VPS41-211ENST00000466017 BRICD5Q6PL45 260 aa8.36□□□□□ -1.07
VPS41-211ENST00000466017 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS41-211ENST00000466017 RNF223E7ERA6 249 aa8.35□□□□□ -1.07
VPS41-211ENST00000466017 PLA2G2CQ5R387 149 aa8.35□□□□□ -1.07
VPS41-211ENST00000466017 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.35□□□□□ -1.07
VPS41-211ENST00000466017 TROQ12816 1431 aaPredicted RBP8.35□□□□□ -1.07
VPS41-211ENST00000466017 LRRIQ1Q96JM4 1722 aa8.34□□□□□ -1.07
VPS41-211ENST00000466017 EHBP1L1Q8N3D4 1523 aa8.34□□□□□ -1.07
VPS41-211ENST00000466017 NR1I2O75469 434 aa8.34□□□□□ -1.07
VPS41-211ENST00000466017 SPSB2Q99619 263 aa8.34□□□□□ -1.07
VPS41-211ENST00000466017 RRBP1Q9P2E9 1410 aaKnown RBP8.34□□□□□ -1.07
VPS41-211ENST00000466017 ARHGEF11O15085 1522 aa8.34□□□□□ -1.08
VPS41-211ENST00000466017 ADH1BP00325 375 aa8.33□□□□□ -1.08
VPS41-211ENST00000466017 PPARGC1BQ86YN6 1023 aaKnown RBP8.33□□□□□ -1.08
VPS41-211ENST00000466017 TBC1D2Q9BYX2 928 aa8.33□□□□□ -1.08
VPS41-211ENST00000466017 PCDHB15Q9Y5E8 787 aa8.33□□□□□ -1.08
VPS41-211ENST00000466017 TTBK1Q5TCY1 1321 aaPredicted RBP8.32□□□□□ -1.08
VPS41-211ENST00000466017 FBXO31Q5XUX0 539 aaPredicted RBP8.32□□□□□ -1.08
VPS41-211ENST00000466017 FAM117AQ9C073 453 aa8.32□□□□□ -1.08
VPS41-211ENST00000466017 CDK13Q14004 1512 aaKnown RBP8.32□□□□□ -1.08
VPS41-211ENST00000466017 MIA2Q96PC5 1412 aa8.31□□□□□ -1.08
VPS41-211ENST00000466017 MAGI3Q5TCQ9 1506 aa8.31□□□□□ -1.08
VPS41-211ENST00000466017 NUTM1Q86Y26 1132 aa8.31□□□□□ -1.08
VPS41-211ENST00000466017 KDM4CQ9H3R0 1056 aa8.31□□□□□ -1.08
VPS41-211ENST00000466017 SUPT6HQ7KZ85 1726 aaKnown RBP8.3□□□□□ -1.08
VPS41-211ENST00000466017 SLC6A16Q9GZN6 736 aa8.3□□□□□ -1.08
VPS41-211ENST00000466017 PHLDB1Q86UU1 1377 aa8.3□□□□□ -1.08
VPS41-211ENST00000466017 NCOA2Q15596 1464 aa8.3□□□□□ -1.08
VPS41-211ENST00000466017 PLEKHG3A1L390 1219 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 LIAT1Q6ZQX7 453 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 PCGF6Q9BYE7 350 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 LIMD1Q9UGP4 676 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 CCNB3Q8WWL7 1395 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 RIMBP3CA6NJZ7 1639 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 RIMBP3BA6NNM3 1639 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 ADCY10Q96PN6 1610 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 RIMBP3Q9UFD9 1639 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 MYOM3Q5VTT5 1437 aa8.29□□□□□ -1.08
VPS41-211ENST00000466017 FMNL1O95466 1100 aaPredicted RBP8.28□□□□□ -1.08
VPS41-211ENST00000466017 FDX1P10109 184 aa8.28□□□□□ -1.08
VPS41-211ENST00000466017 PRKD2Q9BZL6 878 aa8.28□□□□□ -1.08
VPS41-211ENST00000466017 ABCC10Q5T3U5 1492 aa8.27□□□□□ -1.09
VPS41-211ENST00000466017 USP46P62068 366 aa8.27□□□□□ -1.09
VPS41-211ENST00000466017 MYSM1Q5VVJ2 828 aa8.27□□□□□ -1.09
VPS41-211ENST00000466017 CYB5RLQ6IPT4 315 aa8.27□□□□□ -1.09
VPS41-211ENST00000466017 SALL2Q9Y467 1007 aaPredicted RBP8.27□□□□□ -1.09
VPS41-211ENST00000466017 TCOF1Q13428 1488 aaKnown RBP8.26□□□□□ -1.09
VPS41-211ENST00000466017 ZCCHC11Q5TAX3 1644 aaKnown RBP8.26□□□□□ -1.09
VPS41-211ENST00000466017 GPATCH8Q9UKJ3 1502 aaKnown RBP8.26□□□□□ -1.09
VPS41-211ENST00000466017 BRPF1P55201 1214 aaPredicted RBP8.26□□□□□ -1.09
VPS41-211ENST00000466017 RSBN1LQ6PCB5 846 aaPredicted RBP8.26□□□□□ -1.09
VPS41-211ENST00000466017 CABLES1Q8TDN4 633 aa8.26□□□□□ -1.09
VPS41-211ENST00000466017 FGD6Q6ZV73 1430 aa8.26□□□□□ -1.09
VPS41-211ENST00000466017 ARID3CA6NKF2 412 aa8.25□□□□□ -1.09
VPS41-211ENST00000466017 HRCP23327 699 aa8.25□□□□□ -1.09
VPS41-211ENST00000466017 CSPP1Q1MSJ5 1256 aa8.25□□□□□ -1.09
VPS41-211ENST00000466017 RIC3Q7Z5B4 369 aa8.25□□□□□ -1.09
VPS41-211ENST00000466017 USB1Q9BQ65 265 aaKnown RBP8.25□□□□□ -1.09
VPS41-211ENST00000466017 POLR3EQ9NVU0 708 aa8.25□□□□□ -1.09
VPS41-211ENST00000466017 WDR7Q9Y4E6 1490 aa8.25□□□□□ -1.09
VPS41-211ENST00000466017 SPTLC1O15269 473 aa8.24□□□□□ -1.09
VPS41-211ENST00000466017 QPCTQ16769 361 aa8.24□□□□□ -1.09
VPS41-211ENST00000466017 GRIPAP1Q4V328 841 aa8.24□□□□□ -1.09
VPS41-211ENST00000466017 PROCA1Q8NCQ7 364 aaPredicted RBP8.24□□□□□ -1.09
VPS41-211ENST00000466017 FCF1Q9Y324 198 aaKnown RBP8.24□□□□□ -1.09
VPS41-211ENST00000466017 ASXL2Q76L83 1435 aa8.23□□□□□ -1.09
VPS41-211ENST00000466017 KIF14Q15058 1648 aa8.23□□□□□ -1.09
VPS41-211ENST00000466017 MSS51Q4VC12 460 aa8.23□□□□□ -1.09
VPS41-211ENST00000466017 ANKLE1Q8NAG6 615 aa8.23□□□□□ -1.09
VPS41-211ENST00000466017 CFDP1Q9UEE9 299 aaPredicted RBP8.23□□□□□ -1.09
VPS41-211ENST00000466017 MAPKBP1O60336 1514 aa8.23□□□□□ -1.09
VPS41-211ENST00000466017 ARAP3Q8WWN8 1544 aa8.23□□□□□ -1.09
VPS41-211ENST00000466017 PLCH2O75038 1416 aa8.22□□□□□ -1.09
VPS41-211ENST00000466017 C6orf229H3BNL8 230 aa8.22□□□□□ -1.09
VPS41-211ENST00000466017 MMP16P51512 607 aa8.22□□□□□ -1.09
VPS41-211ENST00000466017 NEUROD2Q15784 382 aa8.22□□□□□ -1.09
VPS41-211ENST00000466017 PTCRAQ6ISU1 281 aaPredicted RBP8.22□□□□□ -1.09
VPS41-211ENST00000466017 TRIM67Q6ZTA4 783 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 180.3 ms