RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 USP32Q8NFA0 1604 aa4.38□□□□□ -1.71
USP40-211ENST00000464956 KANK1Q14678 1352 aa4.38□□□□□ -1.71
USP40-211ENST00000464956 UTRNP46939 3433 aa4.37□□□□□ -1.71
USP40-211ENST00000464956 CCDC141Q6ZP82 1450 aa4.37□□□□□ -1.71
USP40-211ENST00000464956 LBX1P52954 281 aa4.37□□□□□ -1.71
USP40-211ENST00000464956 LMOD2Q6P5Q4 547 aa4.37□□□□□ -1.71
USP40-211ENST00000464956 CSRNP3Q8WYN3 585 aa4.37□□□□□ -1.71
USP40-211ENST00000464956 SPATA31A1Q5TZJ5 1347 aa4.37□□□□□ -1.71
USP40-211ENST00000464956 RRBP1Q9P2E9 1410 aaKnown RBP4.37□□□□□ -1.71
USP40-211ENST00000464956 KIAA1210Q9ULL0 1709 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 PSME1Q06323 249 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 TXNRD1Q16881 649 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 BARGINQ6ZT62 677 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 PROM2Q8N271 834 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 SLC17A8Q8NDX2 589 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 USP35Q9P2H5 1018 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 CCDC144AA2RUR9 1427 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 PRAG1Q86YV5 1406 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 TULP4Q9NRJ4 1543 aa4.36□□□□□ -1.71
USP40-211ENST00000464956 KRT28Q7Z3Y7 464 aa4.35□□□□□ -1.71
USP40-211ENST00000464956 ARHGEF10O15013 1369 aa4.35□□□□□ -1.71
USP40-211ENST00000464956 KIF15Q9NS87 1388 aa4.35□□□□□ -1.71
USP40-211ENST00000464956 PTPN23Q9H3S7 1636 aa4.35□□□□□ -1.71
USP40-211ENST00000464956 CROCC2H7BZ55 1655 aa4.35□□□□□ -1.71
USP40-211ENST00000464956 THSD7AQ9UPZ6 1657 aa4.35□□□□□ -1.71
USP40-211ENST00000464956 CDC42BPAQ5VT25 1732 aa4.35□□□□□ -1.71
USP40-211ENST00000464956 MARF1Q9Y4F3 1742 aaKnown RBP4.35□□□□□ -1.71
USP40-211ENST00000464956 HABP4Q5JVS0 413 aaKnown RBP4.34□□□□□ -1.71
USP40-211ENST00000464956 PRDM11Q9NQV5 511 aa4.34□□□□□ -1.71
USP40-211ENST00000464956 STRN4Q9NRL3 753 aa4.34□□□□□ -1.71
USP40-211ENST00000464956 TNS3Q68CZ2 1445 aa4.34□□□□□ -1.71
USP40-211ENST00000464956 NWD2Q9ULI1 1742 aa4.34□□□□□ -1.71
USP40-211ENST00000464956 OVOS2A0A0G2JMS6 1433 aa4.33□□□□□ -1.72
USP40-211ENST00000464956 OVOS2A0A0J9YW53 1432 aa4.33□□□□□ -1.72
USP40-211ENST00000464956 OVOS2Q6IE36 1432 aa4.33□□□□□ -1.72
USP40-211ENST00000464956 METP08581 1390 aa4.33□□□□□ -1.72
USP40-211ENST00000464956 KDM2BQ8NHM5 1336 aa4.33□□□□□ -1.72
USP40-211ENST00000464956 MKRN1Q9UHC7 482 aaKnown RBP4.33□□□□□ -1.72
USP40-211ENST00000464956 CD2APQ9Y5K6 639 aa4.33□□□□□ -1.72
USP40-211ENST00000464956 HSPA8P11142 646 aaKnown RBP4.32□□□□□ -1.72
USP40-211ENST00000464956 EVA1CP58658 441 aa4.32□□□□□ -1.72
USP40-211ENST00000464956 TCP11L2Q8N4U5 519 aa4.32□□□□□ -1.72
USP40-211ENST00000464956 CREBZFQ9NS37 354 aa4.32□□□□□ -1.72
USP40-211ENST00000464956 WBP1LQ9NX94 342 aa4.32□□□□□ -1.72
USP40-211ENST00000464956 TECPR2O15040 1411 aa4.31□□□□□ -1.72
USP40-211ENST00000464956 SBNO1A3KN83 1393 aa4.31□□□□□ -1.72
USP40-211ENST00000464956 NUTM2FA1L443 756 aa4.31□□□□□ -1.72
USP40-211ENST00000464956 NBPF15Q8N660 670 aa4.31□□□□□ -1.72
USP40-211ENST00000464956 THRAP3Q9Y2W1 955 aaKnown RBP4.31□□□□□ -1.72
USP40-211ENST00000464956 XRN1Q8IZH2 1706 aaKnown RBP4.31□□□□□ -1.72
USP40-211ENST00000464956 PLCH1Q4KWH8 1693 aa4.31□□□□□ -1.72
USP40-211ENST00000464956 EIF2AK4Q9P2K8 1649 aaKnown RBP4.31□□□□□ -1.72
USP40-211ENST00000464956 C10orf71Q711Q0 1435 aa4.3□□□□□ -1.72
USP40-211ENST00000464956 CASKIN1Q8WXD9 1431 aa4.3□□□□□ -1.72
USP40-211ENST00000464956 PLEKHG2Q9H7P9 1386 aa4.3□□□□□ -1.72
USP40-211ENST00000464956 MAP2K1Q02750 393 aaPredicted RBP4.3□□□□□ -1.72
USP40-211ENST00000464956 PTF1AQ7RTS3 328 aa4.3□□□□□ -1.72
USP40-211ENST00000464956 BEGAINQ9BUH8 593 aa4.3□□□□□ -1.72
USP40-211ENST00000464956 RRAGCQ9HB90 399 aa4.3□□□□□ -1.72
USP40-211ENST00000464956 TFCP2L1Q9NZI6 479 aa4.3□□□□□ -1.72
USP40-211ENST00000464956 HFM1A2PYH4 1435 aa4.29□□□□□ -1.72
USP40-211ENST00000464956 CEP152O94986 1710 aa4.29□□□□□ -1.72
USP40-211ENST00000464956 CNTNAP1P78357 1384 aa4.29□□□□□ -1.72
USP40-211ENST00000464956 ROBO2Q9HCK4 1378 aa4.29□□□□□ -1.72
USP40-211ENST00000464956 IGSF1Q8N6C5 1336 aa4.29□□□□□ -1.72
USP40-211ENST00000464956 ZNF827Q17R98 1081 aa4.29□□□□□ -1.72
USP40-211ENST00000464956 MCOLN1Q9GZU1 580 aa4.29□□□□□ -1.72
USP40-211ENST00000464956 BRD4O60885 1362 aaPredicted RBP4.28□□□□□ -1.72
USP40-211ENST00000464956 RGPD3A6NKT7 1758 aaPredicted RBP4.28□□□□□ -1.72
USP40-211ENST00000464956 RGPD4Q7Z3J3 1758 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 LMTK2Q8IWU2 1503 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 MSH5O43196 834 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 MNX1P50219 401 aaPredicted RBP4.28□□□□□ -1.72
USP40-211ENST00000464956 FXR1P51114 621 aaKnown RBP eCLIP4.28□□□□□ -1.72
USP40-211ENST00000464956 DDB1Q16531 1140 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 ZNF219Q9P2Y4 722 aaPredicted RBP4.28□□□□□ -1.72
USP40-211ENST00000464956 PHF8Q9UPP1 1060 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 NALCNQ8IZF0 1738 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 PXDNLA1KZ92 1463 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 ERBINQ96RT1 1412 aa4.28□□□□□ -1.72
USP40-211ENST00000464956 PNPLA7Q6ZV29 1317 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 DUOX2Q9NRD8 1548 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 NRAPQ86VF7 1730 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 ARHGEF28Q8N1W1 1705 aaKnown RBP4.27□□□□□ -1.73
USP40-211ENST00000464956 VEGFAP15692 232 aaPredicted RBP4.27□□□□□ -1.73
USP40-211ENST00000464956 UBTFP17480 764 aaKnown RBP4.27□□□□□ -1.73
USP40-211ENST00000464956 VEGFBP49765 207 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 SOX10P56693 466 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 CHRNA2Q15822 529 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 C9orf131Q5VYM1 1079 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 LARP1Q6PKG0 1096 aaKnown RBP4.27□□□□□ -1.73
USP40-211ENST00000464956 ARHGAP27Q6ZUM4 889 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 AKT1S1Q96B36 256 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 SSH2Q76I76 1423 aa4.27□□□□□ -1.73
USP40-211ENST00000464956 DGKZQ13574 1117 aa4.26□□□□□ -1.73
USP40-211ENST00000464956 ZNF326Q5BKZ1 582 aaKnown RBP4.26□□□□□ -1.73
USP40-211ENST00000464956 RRP7BPQ9NSQ0 103 aa4.26□□□□□ -1.73
USP40-211ENST00000464956 COL14A1Q05707 1796 aaKnown RBP4.26□□□□□ -1.73
USP40-211ENST00000464956 BCL9O00512 1426 aa4.26□□□□□ -1.73
USP40-211ENST00000464956 ARHGEF5Q12774 1597 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms