RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 PRDM11Q9NQV5 511 aa21.4■■□□□ 1.02
SMC1A-204ENST00000463684 DLC1Q96QB1 1528 aa21.39■■□□□ 1.02
SMC1A-204ENST00000463684 COL14A1Q05707 1796 aaKnown RBP21.38■■□□□ 1.01
SMC1A-204ENST00000463684 EZH2Q15910 746 aaKnown RBP21.38■■□□□ 1.01
SMC1A-204ENST00000463684 NRAPQ86VF7 1730 aa21.38■■□□□ 1.01
SMC1A-204ENST00000463684 WASLO00401 505 aaPredicted RBP21.37■■□□□ 1.01
SMC1A-204ENST00000463684 PRR36Q9H6K5 1346 aa21.36■■□□□ 1.01
SMC1A-204ENST00000463684 FAM196AQ6ZSG2 479 aa21.36■■□□□ 1.01
SMC1A-204ENST00000463684 DISP2A7MBM2 1401 aa21.36■■□□□ 1.01
SMC1A-204ENST00000463684 RGPD1P0DJD0 1748 aa21.35■■□□□ 1.01
SMC1A-204ENST00000463684 TRIM37O94972 964 aa21.35■■□□□ 1.01
SMC1A-204ENST00000463684 ADGRB2O60241 1585 aa21.35■■□□□ 1.01
SMC1A-204ENST00000463684 TRPM3Q9HCF6 1732 aaPredicted RBP21.35■■□□□ 1.01
SMC1A-204ENST00000463684 SPATA31A1Q5TZJ5 1347 aa21.34■■□□□ 1.01
SMC1A-204ENST00000463684 APBA3O96018 575 aa21.33■■□□□ 1.01
SMC1A-204ENST00000463684 CAMKK2Q96RR4 588 aa21.33■■□□□ 1.01
SMC1A-204ENST00000463684 STRN4Q9NRL3 753 aa21.33■■□□□ 1.01
SMC1A-204ENST00000463684 ALS2Q96Q42 1657 aa21.32■■□□□ 1
SMC1A-204ENST00000463684 KDM2AQ9Y2K7 1162 aa21.32■■□□□ 1
SMC1A-204ENST00000463684 TULP4Q9NRJ4 1543 aa21.32■■□□□ 1
SMC1A-204ENST00000463684 CHRNA2Q15822 529 aa21.31■■□□□ 1
SMC1A-204ENST00000463684 EVA1CP58658 441 aa21.3■■□□□ 1
SMC1A-204ENST00000463684 KIAA0232Q92628 1395 aa21.3■■□□□ 1
SMC1A-204ENST00000463684 THSD7AQ9UPZ6 1657 aa21.29■■□□□ 1
SMC1A-204ENST00000463684 ADGRB1O14514 1584 aa21.29■■□□□ 1
SMC1A-204ENST00000463684 ZC3H6P61129 1189 aaKnown RBP21.29■■□□□ 1
SMC1A-204ENST00000463684 PDE3BQ13370 1112 aa21.29■■□□□ 1
SMC1A-204ENST00000463684 DCAF11Q8TEB1 546 aa21.29■■□□□ 1
SMC1A-204ENST00000463684 USP35Q9P2H5 1018 aa21.29■■□□□ 1
SMC1A-204ENST00000463684 PARD3Q8TEW0 1356 aa21.28■■□□□ 1
SMC1A-204ENST00000463684 NUDT16Q96DE0 195 aaKnown RBP21.28■■□□□ 1
SMC1A-204ENST00000463684 NBPF8Q3BBV2 869 aa21.27■■□□□ 1
SMC1A-204ENST00000463684 NBPF14Q5TI25 921 aa21.27■■□□□ 1
SMC1A-204ENST00000463684 STAC3Q96MF2 364 aa21.27■■□□□ 1
SMC1A-204ENST00000463684 NUTM2GQ5VZR2 741 aa21.26■□□□□ 0.99
SMC1A-204ENST00000463684 BARGINQ6ZT62 677 aa21.25■□□□□ 0.99
SMC1A-204ENST00000463684 TNS1Q9HBL0 1735 aaKnown RBP21.24■□□□□ 0.99
SMC1A-204ENST00000463684 CRYBG1Q9Y4K1 1723 aa21.21■□□□□ 0.99
SMC1A-204ENST00000463684 ATP7BP35670 1465 aa21.21■□□□□ 0.99
SMC1A-204ENST00000463684 YY1P25490 414 aa21.21■□□□□ 0.99
SMC1A-204ENST00000463684 TCP11L2Q8N4U5 519 aa21.21■□□□□ 0.99
SMC1A-204ENST00000463684 CDK19Q9BWU1 502 aa21.21■□□□□ 0.99
SMC1A-204ENST00000463684 LARP1Q6PKG0 1096 aaKnown RBP21.2■□□□□ 0.98
SMC1A-204ENST00000463684 SSH2Q76I76 1423 aa21.2■□□□□ 0.98
SMC1A-204ENST00000463684 DCAF8L1A6NGE4 600 aa21.19■□□□□ 0.98
SMC1A-204ENST00000463684 ABTB2Q8N961 1025 aa21.19■□□□□ 0.98
SMC1A-204ENST00000463684 PPP1R1BQ9UD71 204 aaPredicted RBP21.19■□□□□ 0.98
SMC1A-204ENST00000463684 CCDC61Q9Y6R9 512 aa21.19■□□□□ 0.98
SMC1A-204ENST00000463684 ACEP12821 1306 aa21.19■□□□□ 0.98
SMC1A-204ENST00000463684 THRAP3Q9Y2W1 955 aaKnown RBP21.18■□□□□ 0.98
SMC1A-204ENST00000463684 C11orf95C9JLR9 678 aaPredicted RBP21.17■□□□□ 0.98
SMC1A-204ENST00000463684 SPON1Q9HCB6 807 aa21.17■□□□□ 0.98
SMC1A-204ENST00000463684 RAB3GAP2Q9H2M9 1393 aa21.17■□□□□ 0.98
SMC1A-204ENST00000463684 POLR3AO14802 1390 aaPredicted RBP21.16■□□□□ 0.98
SMC1A-204ENST00000463684 PLEKHG3A1L390 1219 aa21.15■□□□□ 0.98
SMC1A-204ENST00000463684 ITSN1Q15811 1721 aa21.15■□□□□ 0.98
SMC1A-204ENST00000463684 PHRF1Q9P1Y6 1649 aaKnown RBP21.15■□□□□ 0.98
SMC1A-204ENST00000463684 KCNQ2O43526 872 aa21.14■□□□□ 0.97
SMC1A-204ENST00000463684 NLRP13Q86W25 1043 aa21.14■□□□□ 0.97
SMC1A-204ENST00000463684 CPDO75976 1380 aa21.13■□□□□ 0.97
SMC1A-204ENST00000463684 CAMTA1Q9Y6Y1 1673 aa21.12■□□□□ 0.97
SMC1A-204ENST00000463684 GCP02774 474 aa21.12■□□□□ 0.97
SMC1A-204ENST00000463684 USP19O94966 1318 aa21.1■□□□□ 0.97
SMC1A-204ENST00000463684 RREB1Q92766 1687 aa21.09■□□□□ 0.97
SMC1A-204ENST00000463684 ZBTB7CA1YPR0 619 aa21.08■□□□□ 0.97
SMC1A-204ENST00000463684 ARHGEF28Q8N1W1 1705 aaKnown RBP21.08■□□□□ 0.97
SMC1A-204ENST00000463684 NUP188Q5SRE5 1749 aa21.07■□□□□ 0.96
SMC1A-204ENST00000463684 PLSCR1O15162 318 aa21.07■□□□□ 0.96
SMC1A-204ENST00000463684 SRPK2P78362 688 aaKnown RBP21.07■□□□□ 0.96
SMC1A-204ENST00000463684 NINLQ9Y2I6 1382 aa21.07■□□□□ 0.96
SMC1A-204ENST00000463684 NRKQ7Z2Y5 1582 aa21.06■□□□□ 0.96
SMC1A-204ENST00000463684 CRB1P82279 1406 aa21.05■□□□□ 0.96
SMC1A-204ENST00000463684 OVOS2A0A0G2JMS6 1433 aa21.04■□□□□ 0.96
SMC1A-204ENST00000463684 OVOS2A0A0J9YW53 1432 aa21.04■□□□□ 0.96
SMC1A-204ENST00000463684 OVOS2Q6IE36 1432 aa21.04■□□□□ 0.96
SMC1A-204ENST00000463684 DDB1Q16531 1140 aa21.04■□□□□ 0.96
SMC1A-204ENST00000463684 COL5A2P05997 1499 aaPredicted RBP21.04■□□□□ 0.96
SMC1A-204ENST00000463684 LMO7Q8WWI1 1683 aa21.04■□□□□ 0.96
SMC1A-204ENST00000463684 NLRP6P59044 892 aa21.03■□□□□ 0.96
SMC1A-204ENST00000463684 TOM1L2Q6ZVM7 507 aa21.03■□□□□ 0.96
SMC1A-204ENST00000463684 PPIP5K1Q6PFW1 1433 aa21.03■□□□□ 0.96
SMC1A-204ENST00000463684 BRD4O60885 1362 aaPredicted RBP21.02■□□□□ 0.96
SMC1A-204ENST00000463684 BCL11BQ9C0K0 894 aaPredicted RBP21.02■□□□□ 0.96
SMC1A-204ENST00000463684 TOPAZ1Q8N9V7 1692 aa21.02■□□□□ 0.95
SMC1A-204ENST00000463684 CABP2Q9NPB3 220 aa21.01■□□□□ 0.95
SMC1A-204ENST00000463684 AATKQ6ZMQ8 1374 aa21■□□□□ 0.95
SMC1A-204ENST00000463684 PARP4Q9UKK3 1724 aaKnown RBP21■□□□□ 0.95
SMC1A-204ENST00000463684 NBPF1Q3BBV0 1214 aa20.99■□□□□ 0.95
SMC1A-204ENST00000463684 CENPJQ9HC77 1338 aaPredicted RBP20.99■□□□□ 0.95
SMC1A-204ENST00000463684 CDCA7Q9BWT1 371 aaPredicted RBP20.98■□□□□ 0.95
SMC1A-204ENST00000463684 ANO8Q9HCE9 1232 aaPredicted RBP20.98■□□□□ 0.95
SMC1A-204ENST00000463684 CABP1Q9NZU7 370 aa20.98■□□□□ 0.95
SMC1A-204ENST00000463684 ZBTB7AO95365 584 aa20.95■□□□□ 0.94
SMC1A-204ENST00000463684 PTF1AQ7RTS3 328 aa20.95■□□□□ 0.94
SMC1A-204ENST00000463684 PROM2Q8N271 834 aa20.94■□□□□ 0.94
SMC1A-204ENST00000463684 MARCH10Q8NA82 808 aaPredicted RBP20.94■□□□□ 0.94
SMC1A-204ENST00000463684 STK32BQ9NY57 414 aa20.94■□□□□ 0.94
SMC1A-204ENST00000463684 WDR17Q8IZU2 1322 aa20.94■□□□□ 0.94
SMC1A-204ENST00000463684 PDGFDQ9GZP0 370 aaPredicted RBP20.93■□□□□ 0.94
SMC1A-204ENST00000463684 ATF5Q9Y2D1 282 aaPredicted RBP20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms