RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MS4A1P11836 297 aa12.54□□□□□ -0.4
USP54-208ENST00000461520 NDUFV2P19404 249 aa12.54□□□□□ -0.4
USP54-208ENST00000461520 RUSC2Q8N2Y8 1516 aa12.53□□□□□ -0.4
USP54-208ENST00000461520 FDX1P10109 184 aa12.53□□□□□ -0.4
USP54-208ENST00000461520 PCDHGC3Q9UN70 934 aa12.53□□□□□ -0.4
USP54-208ENST00000461520 MOXD2PA6NHM9 499 aa12.52□□□□□ -0.41
USP54-208ENST00000461520 MMP16P51512 607 aa12.52□□□□□ -0.41
USP54-208ENST00000461520 PDE4DQ08499 809 aa12.52□□□□□ -0.41
USP54-208ENST00000461520 CUL7Q14999 1698 aa12.51□□□□□ -0.41
USP54-208ENST00000461520 KIAA0586Q9BVV6 1533 aa12.51□□□□□ -0.41
USP54-208ENST00000461520 LCE2BO14633 110 aa12.5□□□□□ -0.41
USP54-208ENST00000461520 TNFRSF10AO00220 468 aa12.49□□□□□ -0.41
USP54-208ENST00000461520 DXOO77932 396 aaKnown RBP12.49□□□□□ -0.41
USP54-208ENST00000461520 RPIAP49247 311 aa12.49□□□□□ -0.41
USP54-208ENST00000461520 C6orf229H3BNL8 230 aa12.48□□□□□ -0.41
USP54-208ENST00000461520 GDF9O60383 454 aa12.48□□□□□ -0.41
USP54-208ENST00000461520 TBC1D2Q9BYX2 928 aa12.48□□□□□ -0.41
USP54-208ENST00000461520 CARMIL1Q5VZK9 1371 aa12.47□□□□□ -0.41
USP54-208ENST00000461520 CD2BP2O95400 341 aaKnown RBP12.47□□□□□ -0.41
USP54-208ENST00000461520 FOXC1Q12948 553 aa12.47□□□□□ -0.41
USP54-208ENST00000461520 TRAF7Q6Q0C0 670 aa12.47□□□□□ -0.41
USP54-208ENST00000461520 ZBTB24O43167 697 aaPredicted RBP12.46□□□□□ -0.41
USP54-208ENST00000461520 RETREG3Q86VR2 466 aa12.46□□□□□ -0.41
USP54-208ENST00000461520 PRR20EP86478 221 aa12.45□□□□□ -0.42
USP54-208ENST00000461520 PRR20CP86479 221 aa12.45□□□□□ -0.42
USP54-208ENST00000461520 PRR20DP86480 221 aa12.45□□□□□ -0.42
USP54-208ENST00000461520 PRR20BP86481 221 aa12.45□□□□□ -0.42
USP54-208ENST00000461520 PRR20AP86496 221 aa12.45□□□□□ -0.42
USP54-208ENST00000461520 CCDC24Q8N4L8 307 aa12.45□□□□□ -0.42
USP54-208ENST00000461520 PKD2L1Q9P0L9 805 aa12.45□□□□□ -0.42
USP54-208ENST00000461520 JUNDP17535 347 aa12.44□□□□□ -0.42
USP54-208ENST00000461520 FAM69CQ0P6D2 419 aa12.44□□□□□ -0.42
USP54-208ENST00000461520 ABCC10Q5T3U5 1492 aa12.44□□□□□ -0.42
USP54-208ENST00000461520 ADCY10Q96PN6 1610 aa12.44□□□□□ -0.42
USP54-208ENST00000461520 DIP2BQ9P265 1576 aa12.43□□□□□ -0.42
USP54-208ENST00000461520 MAPKBP1O60336 1514 aa12.43□□□□□ -0.42
USP54-208ENST00000461520 RSBN1LQ6PCB5 846 aaPredicted RBP12.41□□□□□ -0.42
USP54-208ENST00000461520 PCDHB15Q9Y5E8 787 aa12.41□□□□□ -0.42
USP54-208ENST00000461520 TSPOAP1O95153 1857 aa12.4□□□□□ -0.42
USP54-208ENST00000461520 TRIM32Q13049 653 aa12.39□□□□□ -0.43
USP54-208ENST00000461520 DIXDC1Q155Q3 683 aa12.39□□□□□ -0.43
USP54-208ENST00000461520 KDM6BO15054 1643 aa12.39□□□□□ -0.43
USP54-208ENST00000461520 CARMIL2Q6F5E8 1435 aa12.38□□□□□ -0.43
USP54-208ENST00000461520 MTMR2Q13614 643 aa12.38□□□□□ -0.43
USP54-208ENST00000461520 PRR7Q8TB68 274 aa12.38□□□□□ -0.43
USP54-208ENST00000461520 PTPRGP23470 1445 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 FAM187AA6NFU0 413 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 SPTLC1O15269 473 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 PKDCCQ504Y2 493 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 RIC3Q7Z5B4 369 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 NUDT12Q9BQG2 462 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 RAPGEF2Q9Y4G8 1499 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 IQGAP2Q13576 1575 aa12.37□□□□□ -0.43
USP54-208ENST00000461520 TNIKQ9UKE5 1360 aa12.36□□□□□ -0.43
USP54-208ENST00000461520 GJA5P36382 358 aa12.36□□□□□ -0.43
USP54-208ENST00000461520 PTCRAQ6ISU1 281 aaPredicted RBP12.36□□□□□ -0.43
USP54-208ENST00000461520 DGAT1O75907 488 aa12.35□□□□□ -0.43
USP54-208ENST00000461520 CSPP1Q1MSJ5 1256 aa12.35□□□□□ -0.43
USP54-208ENST00000461520 MYSM1Q5VVJ2 828 aa12.34□□□□□ -0.43
USP54-208ENST00000461520 SPDYE5A6NIY4 337 aa12.33□□□□□ -0.44
USP54-208ENST00000461520 CABLES1Q8TDN4 633 aa12.33□□□□□ -0.44
USP54-208ENST00000461520 LIMD1Q9UGP4 676 aa12.33□□□□□ -0.44
USP54-208ENST00000461520 TTBK1Q5TCY1 1321 aaPredicted RBP12.33□□□□□ -0.44
USP54-208ENST00000461520 HRCP23327 699 aa12.32□□□□□ -0.44
USP54-208ENST00000461520 MYT1Q01538 1121 aa12.32□□□□□ -0.44
USP54-208ENST00000461520 CYP4X1Q8N118 509 aa12.32□□□□□ -0.44
USP54-208ENST00000461520 GPBP1L1Q9HC44 474 aaPredicted RBP12.32□□□□□ -0.44
USP54-208ENST00000461520 TOR4AQ9NXH8 423 aa12.32□□□□□ -0.44
USP54-208ENST00000461520 CFAP99D6REC4 459 aa12.31□□□□□ -0.44
USP54-208ENST00000461520 WNT7AO00755 349 aa12.31□□□□□ -0.44
USP54-208ENST00000461520 CCNYL3P0C7X3 344 aa12.31□□□□□ -0.44
USP54-208ENST00000461520 SKOR1P84550 965 aa12.31□□□□□ -0.44
USP54-208ENST00000461520 ABCC2Q92887 1545 aa12.31□□□□□ -0.44
USP54-208ENST00000461520 DISP1Q96F81 1524 aa12.31□□□□□ -0.44
USP54-208ENST00000461520 UGGT2Q9NYU1 1516 aa12.31□□□□□ -0.44
USP54-208ENST00000461520 ZBTB3Q9H5J0 574 aa12.3□□□□□ -0.44
USP54-208ENST00000461520 UHRF1BP1LA0JNW5 1464 aa12.29□□□□□ -0.44
USP54-208ENST00000461520 PTPRNQ16849 979 aa12.29□□□□□ -0.44
USP54-208ENST00000461520 MRGPRX2Q96LB1 330 aa12.29□□□□□ -0.44
USP54-208ENST00000461520 UACAQ9BZF9 1416 aa12.28□□□□□ -0.44
USP54-208ENST00000461520 QPCTQ16769 361 aa12.28□□□□□ -0.44
USP54-208ENST00000461520 DESI1Q6ICB0 168 aa12.28□□□□□ -0.44
USP54-208ENST00000461520 EVA1BQ9NVM1 165 aa12.28□□□□□ -0.44
USP54-208ENST00000461520 TTC24A2A3L6 582 aaPredicted RBP12.27□□□□□ -0.45
USP54-208ENST00000461520 RC3H1Q5TC82 1133 aaKnown RBP12.27□□□□□ -0.45
USP54-208ENST00000461520 PRPF38BQ5VTL8 546 aaKnown RBP12.27□□□□□ -0.45
USP54-208ENST00000461520 KDM4CQ9H3R0 1056 aa12.27□□□□□ -0.45
USP54-208ENST00000461520 POLR3EQ9NVU0 708 aa12.27□□□□□ -0.45
USP54-208ENST00000461520 PPRC1Q5VV67 1664 aaKnown RBP12.26□□□□□ -0.45
USP54-208ENST00000461520 PLB1Q6P1J6 1458 aa12.26□□□□□ -0.45
USP54-208ENST00000461520 KIAA0556O60303 1618 aa12.26□□□□□ -0.45
USP54-208ENST00000461520 WNT7BP56706 349 aa12.25□□□□□ -0.45
USP54-208ENST00000461520 KCNH2Q12809 1159 aa12.25□□□□□ -0.45
USP54-208ENST00000461520 ASXL2Q76L83 1435 aa12.25□□□□□ -0.45
USP54-208ENST00000461520 PRXQ9BXM0 1461 aa12.25□□□□□ -0.45
USP54-208ENST00000461520 NUTM2BA6NNL0 878 aaPredicted RBP12.24□□□□□ -0.45
USP54-208ENST00000461520 NUTM2EB1AL46 878 aaPredicted RBP12.24□□□□□ -0.45
USP54-208ENST00000461520 ST8SIA5O15466 376 aa12.24□□□□□ -0.45
USP54-208ENST00000461520 NUTM2DQ5VT03 806 aaPredicted RBP12.24□□□□□ -0.45
USP54-208ENST00000461520 LYPD8Q6UX82 237 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms