RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 CNTNAP3BQ96NU0 1288 aa8□□□□□ -1.13
HMGB4-202ENST00000458277 NUDT12Q9BQG2 462 aa8□□□□□ -1.13
HMGB4-202ENST00000458277 CNTNAP3Q9BZ76 1288 aa8□□□□□ -1.13
HMGB4-202ENST00000458277 TSHZ2Q9NRE2 1034 aa8□□□□□ -1.13
HMGB4-202ENST00000458277 SEMA3EO15041 775 aa7.99□□□□□ -1.13
HMGB4-202ENST00000458277 KDM4AO75164 1064 aa7.99□□□□□ -1.13
HMGB4-202ENST00000458277 IGHA1P01876 353 aa7.99□□□□□ -1.13
HMGB4-202ENST00000458277 WDR4P57081 412 aaKnown RBP7.99□□□□□ -1.13
HMGB4-202ENST00000458277 KRT76Q01546 638 aa7.99□□□□□ -1.13
HMGB4-202ENST00000458277 DNMT3AQ9Y6K1 912 aaPredicted RBP7.99□□□□□ -1.13
HMGB4-202ENST00000458277 TIMP2P16035 220 aa7.98□□□□□ -1.13
HMGB4-202ENST00000458277 YTHDC1Q96MU7 727 aaKnown RBP7.98□□□□□ -1.13
HMGB4-202ENST00000458277 C6orf118Q5T5N4 469 aa7.97□□□□□ -1.13
HMGB4-202ENST00000458277 RBM26Q5T8P6 1007 aaKnown RBP7.97□□□□□ -1.13
HMGB4-202ENST00000458277 SYMPKQ92797 1274 aaKnown RBP7.97□□□□□ -1.13
HMGB4-202ENST00000458277 ADH1CP00326 375 aa7.96□□□□□ -1.14
HMGB4-202ENST00000458277 LINC01559Q495D7 138 aa7.96□□□□□ -1.14
HMGB4-202ENST00000458277 GPR161Q8N6U8 529 aaKnown RBP7.96□□□□□ -1.14
HMGB4-202ENST00000458277 ARXQ96QS3 562 aa7.96□□□□□ -1.14
HMGB4-202ENST00000458277 PLEKHG3A1L390 1219 aa7.95□□□□□ -1.14
HMGB4-202ENST00000458277 CD46P15529 392 aa7.95□□□□□ -1.14
HMGB4-202ENST00000458277 GUCA2AQ02747 115 aa7.95□□□□□ -1.14
HMGB4-202ENST00000458277 SVOPQ8N4V2 548 aa7.95□□□□□ -1.14
HMGB4-202ENST00000458277 ZNF385CQ66K41 422 aaPredicted RBP7.94□□□□□ -1.14
HMGB4-202ENST00000458277 KRTAP4-8Q9BYQ9 185 aa7.93□□□□□ -1.14
HMGB4-202ENST00000458277 FOXK2Q01167 660 aa7.92□□□□□ -1.14
HMGB4-202ENST00000458277 BAP1Q92560 729 aa7.92□□□□□ -1.14
HMGB4-202ENST00000458277 HOXA2O43364 376 aa7.91□□□□□ -1.14
HMGB4-202ENST00000458277 MARSP56192 900 aaKnown RBP7.91□□□□□ -1.14
HMGB4-202ENST00000458277 KLF16Q9BXK1 252 aaPredicted RBP7.91□□□□□ -1.14
HMGB4-202ENST00000458277 COL25A1Q9BXS0 654 aaPredicted RBP7.91□□□□□ -1.14
HMGB4-202ENST00000458277 ZFAND3Q9H8U3 227 aa7.91□□□□□ -1.14
HMGB4-202ENST00000458277 FANCIQ9NVI1 1328 aa7.9□□□□□ -1.14
HMGB4-202ENST00000458277 GPR37O15354 613 aa7.9□□□□□ -1.14
HMGB4-202ENST00000458277 ZIC2O95409 532 aaPredicted RBP7.9□□□□□ -1.14
HMGB4-202ENST00000458277 CCNYL3P0C7X3 344 aa7.9□□□□□ -1.14
HMGB4-202ENST00000458277 BMP2P12643 396 aa7.9□□□□□ -1.14
HMGB4-202ENST00000458277 VARSP26640 1264 aaKnown RBP7.9□□□□□ -1.14
HMGB4-202ENST00000458277 USP46P62068 366 aa7.9□□□□□ -1.14
HMGB4-202ENST00000458277 WHAMMQ8TF30 809 aa7.9□□□□□ -1.14
HMGB4-202ENST00000458277 UNC93B1Q9H1C4 597 aa7.9□□□□□ -1.14
HMGB4-202ENST00000458277 SUPT16HQ9Y5B9 1047 aaKnown RBP7.9□□□□□ -1.14
HMGB4-202ENST00000458277 ADAM23O75077 832 aa7.89□□□□□ -1.15
HMGB4-202ENST00000458277 KANK3Q6NY19 840 aa7.89□□□□□ -1.15
HMGB4-202ENST00000458277 RETREG3Q86VR2 466 aa7.88□□□□□ -1.15
HMGB4-202ENST00000458277 MPNDQ8N594 471 aa7.88□□□□□ -1.15
HMGB4-202ENST00000458277 ITPKCQ96DU7 683 aa7.88□□□□□ -1.15
HMGB4-202ENST00000458277 DNMT3LQ9UJW3 386 aa7.88□□□□□ -1.15
HMGB4-202ENST00000458277 UPP2O95045 317 aa7.87□□□□□ -1.15
HMGB4-202ENST00000458277 MS4A1P11836 297 aa7.87□□□□□ -1.15
HMGB4-202ENST00000458277 RNFT1Q5M7Z0 435 aa7.87□□□□□ -1.15
HMGB4-202ENST00000458277 ZNF511Q8NB15 262 aa7.87□□□□□ -1.15
HMGB4-202ENST00000458277 NACADO15069 1562 aa7.87□□□□□ -1.15
HMGB4-202ENST00000458277 ARHGEF15O94989 841 aa7.86□□□□□ -1.15
HMGB4-202ENST00000458277 DEKP35659 375 aaKnown RBP7.86□□□□□ -1.15
HMGB4-202ENST00000458277 ARID5BQ14865 1188 aa7.86□□□□□ -1.15
HMGB4-202ENST00000458277 LINC00528Q8N1L1 170 aa7.85□□□□□ -1.15
HMGB4-202ENST00000458277 RB1CC1Q8TDY2 1594 aa7.84□□□□□ -1.15
HMGB4-202ENST00000458277 SOS2Q07890 1332 aaPredicted RBP7.84□□□□□ -1.15
HMGB4-202ENST00000458277 MSTNO14793 375 aa7.84□□□□□ -1.15
HMGB4-202ENST00000458277 SCARF2Q96GP6 870 aaPredicted RBP7.84□□□□□ -1.15
HMGB4-202ENST00000458277 EVA1BQ9NVM1 165 aa7.84□□□□□ -1.15
HMGB4-202ENST00000458277 C6orf229H3BNL8 230 aa7.83□□□□□ -1.16
HMGB4-202ENST00000458277 FAM174AQ8TBP5 190 aa7.83□□□□□ -1.16
HMGB4-202ENST00000458277 PSMG3-AS1Q96PY0 264 aa7.83□□□□□ -1.16
HMGB4-202ENST00000458277 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.82□□□□□ -1.16
HMGB4-202ENST00000458277 NR3C2P08235 984 aa7.82□□□□□ -1.16
HMGB4-202ENST00000458277 PTSQ03393 145 aa7.82□□□□□ -1.16
HMGB4-202ENST00000458277 KCNH2Q12809 1159 aa7.82□□□□□ -1.16
HMGB4-202ENST00000458277 SMYD5Q6GMV2 418 aa7.82□□□□□ -1.16
HMGB4-202ENST00000458277 SLURP2P0DP57 97 aa7.81□□□□□ -1.16
HMGB4-202ENST00000458277 PTPRNQ16849 979 aa7.81□□□□□ -1.16
HMGB4-202ENST00000458277 RBM19Q9Y4C8 960 aaKnown RBP7.81□□□□□ -1.16
HMGB4-202ENST00000458277 MDM2Q00987 491 aaPredicted RBP7.8□□□□□ -1.16
HMGB4-202ENST00000458277 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.8□□□□□ -1.16
HMGB4-202ENST00000458277 PLA2G4EQ3MJ16 856 aa7.8□□□□□ -1.16
HMGB4-202ENST00000458277 P3H3Q8IVL6 736 aa7.8□□□□□ -1.16
HMGB4-202ENST00000458277 MEIOBQ8N635 442 aa7.8□□□□□ -1.16
HMGB4-202ENST00000458277 SPOCK3Q9BQ16 436 aa7.8□□□□□ -1.16
HMGB4-202ENST00000458277 KRTAP9-2Q9BYQ4 174 aa7.8□□□□□ -1.16
HMGB4-202ENST00000458277 RSPH6AQ9H0K4 717 aa7.8□□□□□ -1.16
HMGB4-202ENST00000458277 TESPA1A2RU30 521 aaPredicted RBP7.79□□□□□ -1.16
HMGB4-202ENST00000458277 FIGNL2A6NMB9 653 aa7.79□□□□□ -1.16
HMGB4-202ENST00000458277 ZNF326Q5BKZ1 582 aaKnown RBP7.79□□□□□ -1.16
HMGB4-202ENST00000458277 NANOS1Q8WY41 292 aaKnown RBP7.79□□□□□ -1.16
HMGB4-202ENST00000458277 NUTM1Q86Y26 1132 aa7.78□□□□□ -1.16
HMGB4-202ENST00000458277 CCDC155Q8N6L0 562 aa7.78□□□□□ -1.16
HMGB4-202ENST00000458277 CDK15Q96Q40 435 aa7.78□□□□□ -1.16
HMGB4-202ENST00000458277 PCDHGC3Q9UN70 934 aa7.78□□□□□ -1.16
HMGB4-202ENST00000458277 KRTAP9-6A0A140TA67 174 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 CDC14CA4D256 554 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 TTLL8A6PVC2 850 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 FDX1P10109 184 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 NR5A1Q13285 461 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 VWA5B2Q8N398 1253 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 GALNT6Q8NCL4 622 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 FOXJ1Q92949 421 aa7.77□□□□□ -1.17
HMGB4-202ENST00000458277 LYPD4Q6UWN0 246 aa7.76□□□□□ -1.17
HMGB4-202ENST00000458277 SPTLC1O15269 473 aa7.75□□□□□ -1.17
HMGB4-202ENST00000458277 CTHP32929 405 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms