RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 SHANK3Q9BYB0 1731 aa25.17■■□□□ 1.62
SF3B4-202ENST00000457312 ALS2Q96Q42 1657 aa25.17■■□□□ 1.62
SF3B4-202ENST00000457312 DLC1Q96QB1 1528 aa25.17■■□□□ 1.62
SF3B4-202ENST00000457312 PTGER2P43116 358 aa25.16■■□□□ 1.62
SF3B4-202ENST00000457312 SPATA31A1Q5TZJ5 1347 aa25.15■■□□□ 1.62
SF3B4-202ENST00000457312 VGFO15240 615 aaPredicted RBP25.15■■□□□ 1.62
SF3B4-202ENST00000457312 WAPLQ7Z5K2 1190 aa25.15■■□□□ 1.62
SF3B4-202ENST00000457312 ANO8Q9HCE9 1232 aaPredicted RBP25.15■■□□□ 1.62
SF3B4-202ENST00000457312 PLEKHH1Q9ULM0 1364 aa25.15■■□□□ 1.62
SF3B4-202ENST00000457312 SYT17Q9BSW7 474 aa25.14■■□□□ 1.62
SF3B4-202ENST00000457312 FHDC1Q9C0D6 1143 aaPredicted RBP25.14■■□□□ 1.62
SF3B4-202ENST00000457312 PDGFDQ9GZP0 370 aaPredicted RBP25.14■■□□□ 1.62
SF3B4-202ENST00000457312 PHF8Q9UPP1 1060 aa25.13■■□□□ 1.61
SF3B4-202ENST00000457312 ZBTB7AO95365 584 aa25.11■■□□□ 1.61
SF3B4-202ENST00000457312 FAM50AQ14320 339 aaKnown RBP25.11■■□□□ 1.61
SF3B4-202ENST00000457312 ROCK1Q13464 1354 aa25.07■■□□□ 1.6
SF3B4-202ENST00000457312 SBF2Q86WG5 1849 aa25.06■■□□□ 1.6
SF3B4-202ENST00000457312 PEAK1Q9H792 1746 aa25.03■■□□□ 1.6
SF3B4-202ENST00000457312 PDE3BQ13370 1112 aa25.03■■□□□ 1.6
SF3B4-202ENST00000457312 STK26Q9P289 416 aa25.03■■□□□ 1.6
SF3B4-202ENST00000457312 ATF5Q9Y2D1 282 aaPredicted RBP25.03■■□□□ 1.6
SF3B4-202ENST00000457312 GOLGB1Q14789 3259 aaKnown RBP25.03■■□□□ 1.6
SF3B4-202ENST00000457312 ABCC11Q96J66 1382 aa25.01■■□□□ 1.59
SF3B4-202ENST00000457312 PARP4Q9UKK3 1724 aaKnown RBP25■■□□□ 1.59
SF3B4-202ENST00000457312 PRDM11Q9NQV5 511 aa25■■□□□ 1.59
SF3B4-202ENST00000457312 RPGRIP1LQ68CZ1 1315 aa25■■□□□ 1.59
SF3B4-202ENST00000457312 MAP3K5Q99683 1374 aa24.99■■□□□ 1.59
SF3B4-202ENST00000457312 SGIP1Q9BQI5 828 aa24.99■■□□□ 1.59
SF3B4-202ENST00000457312 BARGINQ6ZT62 677 aa24.98■■□□□ 1.59
SF3B4-202ENST00000457312 PHRF1Q9P1Y6 1649 aaKnown RBP24.97■■□□□ 1.59
SF3B4-202ENST00000457312 STRN4Q9NRL3 753 aa24.96■■□□□ 1.59
SF3B4-202ENST00000457312 USP35Q9P2H5 1018 aa24.95■■□□□ 1.58
SF3B4-202ENST00000457312 PLSCR1O15162 318 aa24.94■■□□□ 1.58
SF3B4-202ENST00000457312 SSH2Q76I76 1423 aa24.94■■□□□ 1.58
SF3B4-202ENST00000457312 KIAA0232Q92628 1395 aa24.93■■□□□ 1.58
SF3B4-202ENST00000457312 HSPA6P17066 643 aa24.92■■□□□ 1.58
SF3B4-202ENST00000457312 PMFBP1Q8TBY8 1022 aa24.92■■□□□ 1.58
SF3B4-202ENST00000457312 GPR162Q16538 588 aa24.91■■□□□ 1.58
SF3B4-202ENST00000457312 BCL11BQ9C0K0 894 aaPredicted RBP24.91■■□□□ 1.58
SF3B4-202ENST00000457312 MTFR1LQ9H019 292 aa24.91■■□□□ 1.58
SF3B4-202ENST00000457312 ANKARQ7Z5J8 1434 aa24.91■■□□□ 1.58
SF3B4-202ENST00000457312 OVOS2A0A0G2JMS6 1433 aa24.9■■□□□ 1.58
SF3B4-202ENST00000457312 OVOS2A0A0J9YW53 1432 aa24.9■■□□□ 1.58
SF3B4-202ENST00000457312 OVOS2Q6IE36 1432 aa24.9■■□□□ 1.58
SF3B4-202ENST00000457312 APLP2Q06481 763 aa24.9■■□□□ 1.58
SF3B4-202ENST00000457312 CHRNA2Q15822 529 aa24.9■■□□□ 1.58
SF3B4-202ENST00000457312 ADGRF5Q8IZF2 1346 aa24.89■■□□□ 1.58
SF3B4-202ENST00000457312 YTHDC2Q9H6S0 1430 aaKnown RBP24.89■■□□□ 1.58
SF3B4-202ENST00000457312 PROM2Q8N271 834 aa24.87■■□□□ 1.57
SF3B4-202ENST00000457312 ARXQ96QS3 562 aa24.87■■□□□ 1.57
SF3B4-202ENST00000457312 LRRC37A3O60309 1634 aa24.86■■□□□ 1.57
SF3B4-202ENST00000457312 TMEM132EQ6IEE7 984 aa24.86■■□□□ 1.57
SF3B4-202ENST00000457312 LMO7Q8WWI1 1683 aa24.85■■□□□ 1.57
SF3B4-202ENST00000457312 GPRASP1Q5JY77 1395 aa24.84■■□□□ 1.57
SF3B4-202ENST00000457312 C11orf95C9JLR9 678 aaPredicted RBP24.84■■□□□ 1.57
SF3B4-202ENST00000457312 TCP11L2Q8N4U5 519 aa24.84■■□□□ 1.57
SF3B4-202ENST00000457312 ACIN1Q9UKV3 1341 aaKnown RBP24.84■■□□□ 1.57
SF3B4-202ENST00000457312 ATP7BP35670 1465 aa24.83■■□□□ 1.57
SF3B4-202ENST00000457312 PTF1AQ7RTS3 328 aa24.83■■□□□ 1.57
SF3B4-202ENST00000457312 STK32BQ9NY57 414 aa24.83■■□□□ 1.57
SF3B4-202ENST00000457312 ATP10DQ9P241 1426 aa24.82■■□□□ 1.56
SF3B4-202ENST00000457312 SLC15A2Q16348 729 aa24.81■■□□□ 1.56
SF3B4-202ENST00000457312 LARP1Q6PKG0 1096 aaKnown RBP24.8■■□□□ 1.56
SF3B4-202ENST00000457312 PIK3C2GO75747 1445 aa24.79■■□□□ 1.56
SF3B4-202ENST00000457312 SIRT1Q96EB6 747 aa24.79■■□□□ 1.56
SF3B4-202ENST00000457312 PAPPAQ13219 1627 aa24.77■■□□□ 1.56
SF3B4-202ENST00000457312 AKAP12Q02952 1782 aa24.77■■□□□ 1.56
SF3B4-202ENST00000457312 CAPN15O75808 1086 aa24.76■■□□□ 1.55
SF3B4-202ENST00000457312 THRAP3Q9Y2W1 955 aaKnown RBP24.76■■□□□ 1.55
SF3B4-202ENST00000457312 WNK3Q9BYP7 1800 aa24.76■■□□□ 1.55
SF3B4-202ENST00000457312 DHX57Q6P158 1386 aaKnown RBP24.76■■□□□ 1.55
SF3B4-202ENST00000457312 TOPAZ1Q8N9V7 1692 aa24.75■■□□□ 1.55
SF3B4-202ENST00000457312 EVA1CP58658 441 aa24.75■■□□□ 1.55
SF3B4-202ENST00000457312 ZC3H6P61129 1189 aaKnown RBP24.75■■□□□ 1.55
SF3B4-202ENST00000457312 PELP1Q8IZL8 1130 aaKnown RBP24.75■■□□□ 1.55
SF3B4-202ENST00000457312 COL24A1Q17RW2 1714 aa24.75■■□□□ 1.55
SF3B4-202ENST00000457312 TXNRD1Q16881 649 aa24.73■■□□□ 1.55
SF3B4-202ENST00000457312 PAK3O75914 559 aaPredicted RBP24.72■■□□□ 1.55
SF3B4-202ENST00000457312 SAFB2Q14151 953 aaKnown RBP eCLIP24.72■■□□□ 1.55
SF3B4-202ENST00000457312 TULP4Q9NRJ4 1543 aa24.71■■□□□ 1.55
SF3B4-202ENST00000457312 AATKQ6ZMQ8 1374 aa24.71■■□□□ 1.55
SF3B4-202ENST00000457312 PRR36Q9H6K5 1346 aa24.71■■□□□ 1.55
SF3B4-202ENST00000457312 SLC34A2O95436 690 aa24.71■■□□□ 1.55
SF3B4-202ENST00000457312 GPBP1L1Q9HC44 474 aaPredicted RBP24.69■■□□□ 1.54
SF3B4-202ENST00000457312 BCL9O00512 1426 aa24.69■■□□□ 1.54
SF3B4-202ENST00000457312 ANKRD30BQ9BXX2 1392 aa24.68■■□□□ 1.54
SF3B4-202ENST00000457312 PRAM1Q96QH2 718 aa24.68■■□□□ 1.54
SF3B4-202ENST00000457312 COL5A2P05997 1499 aaPredicted RBP24.68■■□□□ 1.54
SF3B4-202ENST00000457312 ADCY9O60503 1353 aa24.67■■□□□ 1.54
SF3B4-202ENST00000457312 COL13A1Q5TAT6 717 aaPredicted RBP24.67■■□□□ 1.54
SF3B4-202ENST00000457312 KLHL34Q8N239 644 aa24.67■■□□□ 1.54
SF3B4-202ENST00000457312 YBX3P16989 372 aaKnown RBP eCLIP24.65■■□□□ 1.54
SF3B4-202ENST00000457312 PRELPP51888 382 aa24.65■■□□□ 1.54
SF3B4-202ENST00000457312 ITSN1Q15811 1721 aa24.65■■□□□ 1.54
SF3B4-202ENST00000457312 SPATA31E1Q6ZUB1 1445 aa24.65■■□□□ 1.54
SF3B4-202ENST00000457312 NLGN2Q8NFZ4 835 aa24.65■■□□□ 1.54
SF3B4-202ENST00000457312 CPDO75976 1380 aa24.65■■□□□ 1.54
SF3B4-202ENST00000457312 CRB1P82279 1406 aa24.64■■□□□ 1.54
SF3B4-202ENST00000457312 QSER1Q2KHR3 1735 aa24.64■■□□□ 1.53
SF3B4-202ENST00000457312 EIF3AQ14152 1382 aaKnown RBP24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms