RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 BRD4O60885 1362 aaPredicted RBP22.95■■□□□ 1.26
SMPD4-214ENST00000455548 CABLES1Q8TDN4 633 aa22.95■■□□□ 1.26
SMPD4-214ENST00000455548 SLC24A1O60721 1099 aa22.94■■□□□ 1.26
SMPD4-214ENST00000455548 PLEKHG5O94827 1062 aa22.93■■□□□ 1.26
SMPD4-214ENST00000455548 QTRT2Q9H974 415 aaKnown RBP22.93■■□□□ 1.26
SMPD4-214ENST00000455548 USP21Q9UK80 565 aa22.93■■□□□ 1.26
SMPD4-214ENST00000455548 ST20-MTHFSA0A0A6YYL1 179 aa22.92■■□□□ 1.26
SMPD4-214ENST00000455548 CRYBG1Q9Y4K1 1723 aa22.91■■□□□ 1.26
SMPD4-214ENST00000455548 USP47Q96K76 1375 aa22.91■■□□□ 1.26
SMPD4-214ENST00000455548 RXRBP28702 533 aa22.91■■□□□ 1.26
SMPD4-214ENST00000455548 USP6P35125 1406 aa22.9■■□□□ 1.26
SMPD4-214ENST00000455548 AKAP12Q02952 1782 aa22.89■■□□□ 1.26
SMPD4-214ENST00000455548 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.89■■□□□ 1.26
SMPD4-214ENST00000455548 PUS7Q96PZ0 661 aaKnown RBP22.89■■□□□ 1.25
SMPD4-214ENST00000455548 TESK2Q96S53 571 aa22.89■■□□□ 1.25
SMPD4-214ENST00000455548 ZNF692Q9BU19 519 aaPredicted RBP22.89■■□□□ 1.25
SMPD4-214ENST00000455548 CDK12Q9NYV4 1490 aaPredicted RBP22.88■■□□□ 1.25
SMPD4-214ENST00000455548 RBM6P78332 1123 aaKnown RBP22.88■■□□□ 1.25
SMPD4-214ENST00000455548 TRPC5Q9UL62 973 aaPredicted RBP22.88■■□□□ 1.25
SMPD4-214ENST00000455548 SLIT2O94813 1529 aa22.87■■□□□ 1.25
SMPD4-214ENST00000455548 BCL9LQ86UU0 1499 aa22.87■■□□□ 1.25
SMPD4-214ENST00000455548 ABTB2Q8N961 1025 aa22.87■■□□□ 1.25
SMPD4-214ENST00000455548 ATRNO75882 1429 aa22.87■■□□□ 1.25
SMPD4-214ENST00000455548 NWD2Q9ULI1 1742 aa22.87■■□□□ 1.25
SMPD4-214ENST00000455548 PHRF1Q9P1Y6 1649 aaKnown RBP22.86■■□□□ 1.25
SMPD4-214ENST00000455548 PLCH1Q4KWH8 1693 aa22.86■■□□□ 1.25
SMPD4-214ENST00000455548 NUTM2GQ5VZR2 741 aa22.85■■□□□ 1.25
SMPD4-214ENST00000455548 CPSF1Q10570 1443 aaKnown RBP22.84■■□□□ 1.25
SMPD4-214ENST00000455548 UNC5CLQ8IV45 518 aa22.84■■□□□ 1.25
SMPD4-214ENST00000455548 COL14A1Q05707 1796 aaKnown RBP22.84■■□□□ 1.25
SMPD4-214ENST00000455548 SSH2Q76I76 1423 aa22.83■■□□□ 1.25
SMPD4-214ENST00000455548 NLRP13Q86W25 1043 aa22.83■■□□□ 1.25
SMPD4-214ENST00000455548 KTN1Q86UP2 1357 aaKnown RBP22.82■■□□□ 1.24
SMPD4-214ENST00000455548 FAM83GA6ND36 823 aa22.82■■□□□ 1.24
SMPD4-214ENST00000455548 MON2Q7Z3U7 1717 aa22.82■■□□□ 1.24
SMPD4-214ENST00000455548 USP19O94966 1318 aa22.82■■□□□ 1.24
SMPD4-214ENST00000455548 TMC1Q8TDI8 760 aa22.81■■□□□ 1.24
SMPD4-214ENST00000455548 NINLQ9Y2I6 1382 aa22.8■■□□□ 1.24
SMPD4-214ENST00000455548 TMF1P82094 1093 aa22.8■■□□□ 1.24
SMPD4-214ENST00000455548 PRDM11Q9NQV5 511 aa22.8■■□□□ 1.24
SMPD4-214ENST00000455548 NRKQ7Z2Y5 1582 aa22.8■■□□□ 1.24
SMPD4-214ENST00000455548 TTC21BQ7Z4L5 1316 aa22.8■■□□□ 1.24
SMPD4-214ENST00000455548 TTC21AQ8NDW8 1320 aa22.8■■□□□ 1.24
SMPD4-214ENST00000455548 PIK3C2AO00443 1686 aa22.79■■□□□ 1.24
SMPD4-214ENST00000455548 HDGFL2Q7Z4V5 671 aaPredicted RBP22.79■■□□□ 1.24
SMPD4-214ENST00000455548 NLRP6P59044 892 aa22.78■■□□□ 1.24
SMPD4-214ENST00000455548 SLC12A5Q9H2X9 1139 aa22.78■■□□□ 1.24
SMPD4-214ENST00000455548 TERF2IPQ9NYB0 399 aa22.78■■□□□ 1.24
SMPD4-214ENST00000455548 KIAA0232Q92628 1395 aa22.77■■□□□ 1.24
SMPD4-214ENST00000455548 CDCA8Q53HL2 280 aa22.77■■□□□ 1.24
SMPD4-214ENST00000455548 GJD4Q96KN9 370 aaPredicted RBP22.77■■□□□ 1.24
SMPD4-214ENST00000455548 CD163L1Q9NR16 1453 aa22.77■■□□□ 1.24
SMPD4-214ENST00000455548 NRAPQ86VF7 1730 aa22.77■■□□□ 1.23
SMPD4-214ENST00000455548 RGS12O14924 1447 aa22.76■■□□□ 1.23
SMPD4-214ENST00000455548 VPS72Q15906 364 aa22.76■■□□□ 1.23
SMPD4-214ENST00000455548 GCP02774 474 aa22.75■■□□□ 1.23
SMPD4-214ENST00000455548 ZC3H6P61129 1189 aaKnown RBP22.75■■□□□ 1.23
SMPD4-214ENST00000455548 BTG4Q9NY30 223 aa22.75■■□□□ 1.23
SMPD4-214ENST00000455548 CPDO75976 1380 aa22.75■■□□□ 1.23
SMPD4-214ENST00000455548 SLIT3O75094 1523 aa22.74■■□□□ 1.23
SMPD4-214ENST00000455548 EDC4Q6P2E9 1401 aaKnown RBP22.74■■□□□ 1.23
SMPD4-214ENST00000455548 GLI3P10071 1580 aa22.72■■□□□ 1.23
SMPD4-214ENST00000455548 CCDC9Q9Y3X0 531 aaKnown RBP22.72■■□□□ 1.23
SMPD4-214ENST00000455548 A0A1W2PP64 1363 aa22.72■■□□□ 1.23
SMPD4-214ENST00000455548 EIF4G2P78344 907 aaKnown RBP eCLIP22.71■■□□□ 1.23
SMPD4-214ENST00000455548 CHRNA2Q15822 529 aa22.71■■□□□ 1.23
SMPD4-214ENST00000455548 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.7■■□□□ 1.22
SMPD4-214ENST00000455548 USP54Q70EL1 1684 aa22.69■■□□□ 1.22
SMPD4-214ENST00000455548 KCNH5Q8NCM2 988 aa22.68■■□□□ 1.22
SMPD4-214ENST00000455548 LMO7Q8WWI1 1683 aa22.68■■□□□ 1.22
SMPD4-214ENST00000455548 USP31Q70CQ4 1352 aa22.67■■□□□ 1.22
SMPD4-214ENST00000455548 ANKRD36BQ8N2N9 1353 aa22.67■■□□□ 1.22
SMPD4-214ENST00000455548 HSPA5P11021 654 aaKnown RBP22.66■■□□□ 1.22
SMPD4-214ENST00000455548 NME9Q86XW9 330 aa22.64■■□□□ 1.21
SMPD4-214ENST00000455548 CAMTA1Q9Y6Y1 1673 aa22.64■■□□□ 1.21
SMPD4-214ENST00000455548 AATKQ6ZMQ8 1374 aa22.63■■□□□ 1.21
SMPD4-214ENST00000455548 SPATA31A5Q5VU36 1347 aa22.63■■□□□ 1.21
SMPD4-214ENST00000455548 SPATA31A7Q8IWB4 1347 aa22.63■■□□□ 1.21
SMPD4-214ENST00000455548 NFAT5O94916 1531 aa22.63■■□□□ 1.21
SMPD4-214ENST00000455548 MYOM1P52179 1685 aa22.63■■□□□ 1.21
SMPD4-214ENST00000455548 STRN4Q9NRL3 753 aa22.63■■□□□ 1.21
SMPD4-214ENST00000455548 ZBTB7CA1YPR0 619 aa22.62■■□□□ 1.21
SMPD4-214ENST00000455548 ONECUT3O60422 494 aaPredicted RBP22.62■■□□□ 1.21
SMPD4-214ENST00000455548 EVA1CP58658 441 aa22.62■■□□□ 1.21
SMPD4-214ENST00000455548 ZRANB1Q9UGI0 708 aa22.62■■□□□ 1.21
SMPD4-214ENST00000455548 ARHGEF25Q86VW2 580 aa22.6■■□□□ 1.21
SMPD4-214ENST00000455548 SEPT12Q8IYM1 358 aa22.6■■□□□ 1.21
SMPD4-214ENST00000455548 COL18A1P39060 1754 aa22.6■■□□□ 1.21
SMPD4-214ENST00000455548 BRWD3Q6RI45 1802 aa22.59■■□□□ 1.21
SMPD4-214ENST00000455548 SOX12O15370 315 aa22.59■■□□□ 1.21
SMPD4-214ENST00000455548 UPF1Q92900 1129 aaKnown RBP eCLIP22.59■■□□□ 1.21
SMPD4-214ENST00000455548 SPATA31A1Q5TZJ5 1347 aa22.58■■□□□ 1.21
SMPD4-214ENST00000455548 OVOS2A0A0J9YW53 1432 aa22.58■■□□□ 1.21
SMPD4-214ENST00000455548 OVOS2Q6IE36 1432 aa22.58■■□□□ 1.21
SMPD4-214ENST00000455548 ABCC6O95255 1503 aa22.58■■□□□ 1.21
SMPD4-214ENST00000455548 FAM98CQ17RN3 349 aaKnown RBP22.58■■□□□ 1.21
SMPD4-214ENST00000455548 COL5A2P05997 1499 aaPredicted RBP22.58■■□□□ 1.2
SMPD4-214ENST00000455548 A0A0G2JS52 829 aa22.56■■□□□ 1.2
SMPD4-214ENST00000455548 MYT1Q01538 1121 aa22.56■■□□□ 1.2
SMPD4-214ENST00000455548 COG3Q96JB2 828 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms