RNA–Protein interactions for RNA: ENST00000453285.1

SDC4P-201, Transcript of syndecan 4 pseudogene, humanhuman

BASIC

Gene SDC4P, Length 601 nt, Biotype processed pseudogene, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P-201ENST00000453285 PIK3C2AO00443 1686 aa8.11□□□□□ -1.11
SDC4P-201ENST00000453285 FAM9BQ8IZU0 186 aa8.11□□□□□ -1.11
SDC4P-201ENST00000453285 PMFBP1Q8TBY8 1022 aa8.11□□□□□ -1.11
SDC4P-201ENST00000453285 C19orf44Q9H6X5 657 aa8.11□□□□□ -1.11
SDC4P-201ENST00000453285 KIF1AQ12756 1690 aa8.11□□□□□ -1.11
SDC4P-201ENST00000453285 TTC21BQ7Z4L5 1316 aa8.1□□□□□ -1.11
SDC4P-201ENST00000453285 ZNF335Q9H4Z2 1342 aaPredicted RBP8.1□□□□□ -1.11
SDC4P-201ENST00000453285 TRPM3Q9HCF6 1732 aaPredicted RBP8.1□□□□□ -1.11
SDC4P-201ENST00000453285 NME9Q86XW9 330 aa8.1□□□□□ -1.11
SDC4P-201ENST00000453285 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.1□□□□□ -1.11
SDC4P-201ENST00000453285 ZRANB1Q9UGI0 708 aa8.1□□□□□ -1.11
SDC4P-201ENST00000453285 DMRT2Q9Y5R5 561 aa8.1□□□□□ -1.11
SDC4P-201ENST00000453285 DCCP43146 1447 aa8.1□□□□□ -1.11
SDC4P-201ENST00000453285 C1orf167Q5SNV9 1468 aa8.09□□□□□ -1.11
SDC4P-201ENST00000453285 C14orf37Q86TY3 774 aa8.09□□□□□ -1.11
SDC4P-201ENST00000453285 PHF8Q9UPP1 1060 aa8.09□□□□□ -1.11
SDC4P-201ENST00000453285 MST1RQ04912 1400 aa8.09□□□□□ -1.11
SDC4P-201ENST00000453285 SCAF1Q9H7N4 1312 aaKnown RBP8.08□□□□□ -1.12
SDC4P-201ENST00000453285 TNNT2P45379 298 aaPredicted RBP8.08□□□□□ -1.12
SDC4P-201ENST00000453285 MTHFSP49914 203 aa8.08□□□□□ -1.12
SDC4P-201ENST00000453285 NGDNQ8NEJ9 315 aaKnown RBP8.08□□□□□ -1.12
SDC4P-201ENST00000453285 ORAI2Q96SN7 254 aa8.08□□□□□ -1.12
SDC4P-201ENST00000453285 OVOS2A0A0J9YW53 1432 aa8.08□□□□□ -1.12
SDC4P-201ENST00000453285 OVOS2Q6IE36 1432 aa8.08□□□□□ -1.12
SDC4P-201ENST00000453285 INSRP06213 1382 aa8.08□□□□□ -1.12
SDC4P-201ENST00000453285 USP31Q70CQ4 1352 aa8.08□□□□□ -1.12
SDC4P-201ENST00000453285 LTBP4Q8N2S1 1624 aa8.07□□□□□ -1.12
SDC4P-201ENST00000453285 COL3A1P02461 1466 aaPredicted RBP8.07□□□□□ -1.12
SDC4P-201ENST00000453285 TTC21AQ8NDW8 1320 aa8.07□□□□□ -1.12
SDC4P-201ENST00000453285 FBLN1P23142 703 aa8.07□□□□□ -1.12
SDC4P-201ENST00000453285 ESCO1Q5FWF5 840 aa8.07□□□□□ -1.12
SDC4P-201ENST00000453285 ALS2Q96Q42 1657 aa8.07□□□□□ -1.12
SDC4P-201ENST00000453285 AATKQ6ZMQ8 1374 aa8.07□□□□□ -1.12
SDC4P-201ENST00000453285 LTN1O94822 1766 aa8.07□□□□□ -1.12
SDC4P-201ENST00000453285 PEAK1Q9H792 1746 aa8.06□□□□□ -1.12
SDC4P-201ENST00000453285 BLMP54132 1417 aaPredicted RBP8.06□□□□□ -1.12
SDC4P-201ENST00000453285 CENPBP07199 599 aaPredicted RBP8.06□□□□□ -1.12
SDC4P-201ENST00000453285 ATF3P18847 181 aa8.06□□□□□ -1.12
SDC4P-201ENST00000453285 POLKQ9UBT6 870 aa8.06□□□□□ -1.12
SDC4P-201ENST00000453285 ADAMTS8Q9UP79 889 aa8.06□□□□□ -1.12
SDC4P-201ENST00000453285 MSH6P52701 1360 aa8.06□□□□□ -1.12
SDC4P-201ENST00000453285 PNPLA6Q8IY17 1366 aa8.06□□□□□ -1.12
SDC4P-201ENST00000453285 SMG6Q86US8 1419 aaKnown RBP8.05□□□□□ -1.12
SDC4P-201ENST00000453285 HNRNPUQ00839 825 aaKnown RBP eCLIP8.05□□□□□ -1.12
SDC4P-201ENST00000453285 CADPS2Q86UW7 1296 aa8.05□□□□□ -1.12
SDC4P-201ENST00000453285 COG3Q96JB2 828 aa8.05□□□□□ -1.12
SDC4P-201ENST00000453285 FOXO3O43524 673 aa8.04□□□□□ -1.12
SDC4P-201ENST00000453285 RGPD5Q99666 1765 aa8.04□□□□□ -1.12
SDC4P-201ENST00000453285 CRYBG1Q9Y4K1 1723 aa8.03□□□□□ -1.12
SDC4P-201ENST00000453285 CDK12Q9NYV4 1490 aaPredicted RBP8.03□□□□□ -1.12
SDC4P-201ENST00000453285 PSME1Q06323 249 aa8.03□□□□□ -1.12
SDC4P-201ENST00000453285 DLG5Q8TDM6 1919 aa8.03□□□□□ -1.12
SDC4P-201ENST00000453285 RGPD1P0DJD0 1748 aa8.03□□□□□ -1.12
SDC4P-201ENST00000453285 NHSL1Q5SYE7 1610 aa8.03□□□□□ -1.12
SDC4P-201ENST00000453285 ZBED9Q6R2W3 1325 aa8.03□□□□□ -1.12
SDC4P-201ENST00000453285 PXDNQ92626 1479 aa8.02□□□□□ -1.13
SDC4P-201ENST00000453285 WDR43Q15061 677 aaKnown RBP eCLIP8.02□□□□□ -1.13
SDC4P-201ENST00000453285 KRT28Q7Z3Y7 464 aa8.02□□□□□ -1.13
SDC4P-201ENST00000453285 ABTB2Q8N961 1025 aa8.02□□□□□ -1.13
SDC4P-201ENST00000453285 CFAP53Q96M91 514 aa8.02□□□□□ -1.13
SDC4P-201ENST00000453285 EMILIN1Q9Y6C2 1016 aa8.02□□□□□ -1.13
SDC4P-201ENST00000453285 PHRF1Q9P1Y6 1649 aaKnown RBP8.02□□□□□ -1.13
SDC4P-201ENST00000453285 SLIT3O75094 1523 aa8.02□□□□□ -1.13
SDC4P-201ENST00000453285 RGPD2P0DJD1 1756 aa8.02□□□□□ -1.13
SDC4P-201ENST00000453285 PAK3O75914 559 aaPredicted RBP8.01□□□□□ -1.13
SDC4P-201ENST00000453285 NLRP6P59044 892 aa8.01□□□□□ -1.13
SDC4P-201ENST00000453285 XPCQ01831 940 aaPredicted RBP8.01□□□□□ -1.13
SDC4P-201ENST00000453285 RRS1Q15050 365 aaKnown RBP8.01□□□□□ -1.13
SDC4P-201ENST00000453285 BRINP3Q76B58 766 aa8.01□□□□□ -1.13
SDC4P-201ENST00000453285 DDX17Q92841 729 aaKnown RBP8.01□□□□□ -1.13
SDC4P-201ENST00000453285 SLAIN2Q9P270 581 aa8.01□□□□□ -1.13
SDC4P-201ENST00000453285 NFAT5O94916 1531 aa8.01□□□□□ -1.13
SDC4P-201ENST00000453285 SBNO1A3KN83 1393 aa8□□□□□ -1.13
SDC4P-201ENST00000453285 SENP3-EIF4A1A0A087X0R7 540 aa8□□□□□ -1.13
SDC4P-201ENST00000453285 DIAPH1O60610 1272 aaKnown RBP8□□□□□ -1.13
SDC4P-201ENST00000453285 IL13P35225 146 aa8□□□□□ -1.13
SDC4P-201ENST00000453285 NUTM2GQ5VZR2 741 aa8□□□□□ -1.13
SDC4P-201ENST00000453285 MED1Q15648 1581 aaPredicted RBP8□□□□□ -1.13
SDC4P-201ENST00000453285 MAP3K19Q56UN5 1328 aa8□□□□□ -1.13
SDC4P-201ENST00000453285 COL18A1P39060 1754 aa7.99□□□□□ -1.13
SDC4P-201ENST00000453285 PPM1GO15355 546 aaPredicted RBP7.99□□□□□ -1.13
SDC4P-201ENST00000453285 CCDC146Q8IYE0 955 aa7.99□□□□□ -1.13
SDC4P-201ENST00000453285 ABCA3Q99758 1704 aa7.99□□□□□ -1.13
SDC4P-201ENST00000453285 IQSEC2Q5JU85 1478 aa7.99□□□□□ -1.13
SDC4P-201ENST00000453285 USP19O94966 1318 aa7.99□□□□□ -1.13
SDC4P-201ENST00000453285 NPHP3Q7Z494 1330 aa7.99□□□□□ -1.13
SDC4P-201ENST00000453285 ROBO1Q9Y6N7 1651 aa7.98□□□□□ -1.13
SDC4P-201ENST00000453285 RUNDC1Q96C34 613 aa7.98□□□□□ -1.13
SDC4P-201ENST00000453285 PLEKHF1Q96S99 279 aa7.98□□□□□ -1.13
SDC4P-201ENST00000453285 NUDCQ9Y266 331 aa7.98□□□□□ -1.13
SDC4P-201ENST00000453285 SOS2Q07890 1332 aaPredicted RBP7.98□□□□□ -1.13
SDC4P-201ENST00000453285 SPATA31A3Q5VYP0 1347 aa7.98□□□□□ -1.13
SDC4P-201ENST00000453285 KIF24Q5T7B8 1368 aa7.97□□□□□ -1.13
SDC4P-201ENST00000453285 TNS3Q68CZ2 1445 aa7.97□□□□□ -1.13
SDC4P-201ENST00000453285 APAF1O14727 1248 aa7.97□□□□□ -1.13
SDC4P-201ENST00000453285 SOX12O15370 315 aa7.97□□□□□ -1.13
SDC4P-201ENST00000453285 U2AF1L5P0DN76 240 aaPredicted RBP7.97□□□□□ -1.13
SDC4P-201ENST00000453285 U2AF1Q01081 240 aaKnown RBP eCLIP7.97□□□□□ -1.13
SDC4P-201ENST00000453285 EIF4A2Q14240 407 aaKnown RBP7.97□□□□□ -1.13
SDC4P-201ENST00000453285 HSP90AB2PQ58FF8 381 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms