RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 TRPC5Q9UL62 973 aaPredicted RBP13.86□□□□□ -0.19
USP54-207ENST00000451492 PPIP5K1Q6PFW1 1433 aa13.86□□□□□ -0.19
USP54-207ENST00000451492 COL14A1Q05707 1796 aaKnown RBP13.86□□□□□ -0.19
USP54-207ENST00000451492 BRWD3Q6RI45 1802 aa13.85□□□□□ -0.19
USP54-207ENST00000451492 GLI3P10071 1580 aa13.85□□□□□ -0.19
USP54-207ENST00000451492 FNBP4Q8N3X1 1017 aaPredicted RBP13.85□□□□□ -0.19
USP54-207ENST00000451492 SLIT2O94813 1529 aa13.85□□□□□ -0.19
USP54-207ENST00000451492 NUTM2GQ5VZR2 741 aa13.84□□□□□ -0.19
USP54-207ENST00000451492 ACEP12821 1306 aa13.84□□□□□ -0.19
USP54-207ENST00000451492 AKAP12Q02952 1782 aa13.83□□□□□ -0.19
USP54-207ENST00000451492 RALGAPBQ86X10 1494 aa13.83□□□□□ -0.2
USP54-207ENST00000451492 NRKQ7Z2Y5 1582 aa13.82□□□□□ -0.2
USP54-207ENST00000451492 CCDC9Q9Y3X0 531 aaKnown RBP13.81□□□□□ -0.2
USP54-207ENST00000451492 CCDC61Q9Y6R9 512 aa13.81□□□□□ -0.2
USP54-207ENST00000451492 POLR3AO14802 1390 aaPredicted RBP13.81□□□□□ -0.2
USP54-207ENST00000451492 UNC5CLQ8IV45 518 aa13.8□□□□□ -0.2
USP54-207ENST00000451492 CARD11Q9BXL7 1154 aa13.8□□□□□ -0.2
USP54-207ENST00000451492 PIK3C2AO00443 1686 aa13.79□□□□□ -0.2
USP54-207ENST00000451492 EP400Q96L91 3159 aa13.79□□□□□ -0.2
USP54-207ENST00000451492 UPF1Q92900 1129 aaKnown RBP eCLIP13.79□□□□□ -0.2
USP54-207ENST00000451492 GJD4Q96KN9 370 aaPredicted RBP13.79□□□□□ -0.2
USP54-207ENST00000451492 EVC2Q86UK5 1308 aa13.79□□□□□ -0.2
USP54-207ENST00000451492 FAM83GA6ND36 823 aa13.78□□□□□ -0.2
USP54-207ENST00000451492 PCGF6Q9BYE7 350 aa13.78□□□□□ -0.2
USP54-207ENST00000451492 MON2Q7Z3U7 1717 aa13.78□□□□□ -0.2
USP54-207ENST00000451492 PLEKHG3A1L390 1219 aa13.77□□□□□ -0.21
USP54-207ENST00000451492 BTG4Q9NY30 223 aa13.77□□□□□ -0.21
USP54-207ENST00000451492 CABP1Q9NZU7 370 aa13.77□□□□□ -0.21
USP54-207ENST00000451492 KIAA0232Q92628 1395 aa13.76□□□□□ -0.21
USP54-207ENST00000451492 A0A0G2JS52 829 aa13.76□□□□□ -0.21
USP54-207ENST00000451492 ZC3H6P61129 1189 aaKnown RBP13.76□□□□□ -0.21
USP54-207ENST00000451492 MYT1Q01538 1121 aa13.76□□□□□ -0.21
USP54-207ENST00000451492 CHRNA2Q15822 529 aa13.76□□□□□ -0.21
USP54-207ENST00000451492 ABTB2Q8N961 1025 aa13.76□□□□□ -0.21
USP54-207ENST00000451492 PRDM11Q9NQV5 511 aa13.76□□□□□ -0.21
USP54-207ENST00000451492 USP6P35125 1406 aa13.75□□□□□ -0.21
USP54-207ENST00000451492 ATAD2Q6PL18 1390 aa13.75□□□□□ -0.21
USP54-207ENST00000451492 ZBTB7CA1YPR0 619 aa13.75□□□□□ -0.21
USP54-207ENST00000451492 RGPD5Q99666 1765 aa13.73□□□□□ -0.21
USP54-207ENST00000451492 LMO7Q8WWI1 1683 aa13.73□□□□□ -0.21
USP54-207ENST00000451492 VPS72Q15906 364 aa13.73□□□□□ -0.21
USP54-207ENST00000451492 STRN4Q9NRL3 753 aa13.73□□□□□ -0.21
USP54-207ENST00000451492 FAM98CQ17RN3 349 aaKnown RBP13.71□□□□□ -0.21
USP54-207ENST00000451492 SBNO2Q9Y2G9 1366 aa13.71□□□□□ -0.22
USP54-207ENST00000451492 SLIT3O75094 1523 aa13.7□□□□□ -0.22
USP54-207ENST00000451492 USP19O94966 1318 aa13.7□□□□□ -0.22
USP54-207ENST00000451492 THSD7AQ9UPZ6 1657 aa13.7□□□□□ -0.22
USP54-207ENST00000451492 SOX12O15370 315 aa13.7□□□□□ -0.22
USP54-207ENST00000451492 SEPT12Q8IYM1 358 aa13.7□□□□□ -0.22
USP54-207ENST00000451492 TMC1Q8TDI8 760 aa13.7□□□□□ -0.22
USP54-207ENST00000451492 LTN1O94822 1766 aa13.7□□□□□ -0.22
USP54-207ENST00000451492 KTN1Q86UP2 1357 aaKnown RBP13.7□□□□□ -0.22
USP54-207ENST00000451492 NLRP6P59044 892 aa13.69□□□□□ -0.22
USP54-207ENST00000451492 NLRP13Q86W25 1043 aa13.69□□□□□ -0.22
USP54-207ENST00000451492 USP35Q9P2H5 1018 aa13.69□□□□□ -0.22
USP54-207ENST00000451492 CAMTA1Q9Y6Y1 1673 aa13.69□□□□□ -0.22
USP54-207ENST00000451492 WNK3Q9BYP7 1800 aa13.69□□□□□ -0.22
USP54-207ENST00000451492 SSH2Q76I76 1423 aa13.67□□□□□ -0.22
USP54-207ENST00000451492 ST20-MTHFSA0A0A6YYL1 179 aa13.67□□□□□ -0.22
USP54-207ENST00000451492 BRD4O60885 1362 aaPredicted RBP13.67□□□□□ -0.22
USP54-207ENST00000451492 CD163L1Q9NR16 1453 aa13.67□□□□□ -0.22
USP54-207ENST00000451492 SPATA31A5Q5VU36 1347 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 TTC21BQ7Z4L5 1316 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 SPATA31A7Q8IWB4 1347 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 USP54Q70EL1 1684 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 CPSF1Q10570 1443 aaKnown RBP13.66□□□□□ -0.22
USP54-207ENST00000451492 COL18A1P39060 1754 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 GCP02774 474 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 EVA1CP58658 441 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.66□□□□□ -0.22
USP54-207ENST00000451492 RGPD1P0DJD0 1748 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 USP47Q96K76 1375 aa13.66□□□□□ -0.22
USP54-207ENST00000451492 FAM182BQ5T319 152 aa13.65□□□□□ -0.22
USP54-207ENST00000451492 KRT27Q7Z3Y8 459 aa13.65□□□□□ -0.22
USP54-207ENST00000451492 CPDO75976 1380 aa13.65□□□□□ -0.22
USP54-207ENST00000451492 COL5A2P05997 1499 aaPredicted RBP13.65□□□□□ -0.22
USP54-207ENST00000451492 CCER1Q8TC90 406 aaPredicted RBP13.64□□□□□ -0.23
USP54-207ENST00000451492 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
USP54-207ENST00000451492 ZRANB1Q9UGI0 708 aa13.64□□□□□ -0.23
USP54-207ENST00000451492 TNS1Q9HBL0 1735 aaKnown RBP13.64□□□□□ -0.23
USP54-207ENST00000451492 NFAT5O94916 1531 aa13.64□□□□□ -0.23
USP54-207ENST00000451492 SPATA31A1Q5TZJ5 1347 aa13.64□□□□□ -0.23
USP54-207ENST00000451492 MYOM1P52179 1685 aa13.63□□□□□ -0.23
USP54-207ENST00000451492 A0A1W2PP64 1363 aa13.63□□□□□ -0.23
USP54-207ENST00000451492 LARP1Q6PKG0 1096 aaKnown RBP13.63□□□□□ -0.23
USP54-207ENST00000451492 HDGFL2Q7Z4V5 671 aaPredicted RBP13.63□□□□□ -0.23
USP54-207ENST00000451492 SLC12A5Q9H2X9 1139 aa13.63□□□□□ -0.23
USP54-207ENST00000451492 TTC21AQ8NDW8 1320 aa13.63□□□□□ -0.23
USP54-207ENST00000451492 KIF20BQ96Q89 1820 aa13.62□□□□□ -0.23
USP54-207ENST00000451492 PARP4Q9UKK3 1724 aaKnown RBP13.62□□□□□ -0.23
USP54-207ENST00000451492 TESK2Q96S53 571 aa13.62□□□□□ -0.23
USP54-207ENST00000451492 BLMP54132 1417 aaPredicted RBP13.62□□□□□ -0.23
USP54-207ENST00000451492 LRRC37A3O60309 1634 aa13.61□□□□□ -0.23
USP54-207ENST00000451492 NME9Q86XW9 330 aa13.61□□□□□ -0.23
USP54-207ENST00000451492 ONECUT3O60422 494 aaPredicted RBP13.6□□□□□ -0.23
USP54-207ENST00000451492 SF3B2Q13435 895 aaKnown RBP13.6□□□□□ -0.23
USP54-207ENST00000451492 EDC4Q6P2E9 1401 aaKnown RBP13.6□□□□□ -0.23
USP54-207ENST00000451492 CRB1P82279 1406 aa13.59□□□□□ -0.23
USP54-207ENST00000451492 DEFB132Q7Z7B7 95 aa13.59□□□□□ -0.23
USP54-207ENST00000451492 TERF2IPQ9NYB0 399 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms