RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 GJD4Q96KN9 370 aaPredicted RBP22.04■■□□□ 1.12
LIMS1-210ENST00000449684 CCDC9Q9Y3X0 531 aaKnown RBP22.04■■□□□ 1.12
LIMS1-210ENST00000449684 POLR3AO14802 1390 aaPredicted RBP22.03■■□□□ 1.12
LIMS1-210ENST00000449684 SLIT2O94813 1529 aa22.02■■□□□ 1.12
LIMS1-210ENST00000449684 ALS2Q96Q42 1657 aa22.02■■□□□ 1.12
LIMS1-210ENST00000449684 TOPAZ1Q8N9V7 1692 aa22.01■■□□□ 1.11
LIMS1-210ENST00000449684 FAM83GA6ND36 823 aa22.01■■□□□ 1.11
LIMS1-210ENST00000449684 NUTM2GQ5VZR2 741 aa22.01■■□□□ 1.11
LIMS1-210ENST00000449684 ABTB2Q8N961 1025 aa22.01■■□□□ 1.11
LIMS1-210ENST00000449684 CABP1Q9NZU7 370 aa22.01■■□□□ 1.11
LIMS1-210ENST00000449684 UPF1Q92900 1129 aaKnown RBP eCLIP22■■□□□ 1.11
LIMS1-210ENST00000449684 PCGF6Q9BYE7 350 aa22■■□□□ 1.11
LIMS1-210ENST00000449684 ABCA3Q99758 1704 aa22■■□□□ 1.11
LIMS1-210ENST00000449684 PRDM11Q9NQV5 511 aa21.98■■□□□ 1.11
LIMS1-210ENST00000449684 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.97■■□□□ 1.11
LIMS1-210ENST00000449684 BTG4Q9NY30 223 aa21.97■■□□□ 1.11
LIMS1-210ENST00000449684 RALGAPBQ86X10 1494 aa21.96■■□□□ 1.11
LIMS1-210ENST00000449684 VPS72Q15906 364 aa21.96■■□□□ 1.11
LIMS1-210ENST00000449684 PLCH1Q4KWH8 1693 aa21.95■■□□□ 1.1
LIMS1-210ENST00000449684 NLRP13Q86W25 1043 aa21.95■■□□□ 1.1
LIMS1-210ENST00000449684 NWD2Q9ULI1 1742 aa21.94■■□□□ 1.1
LIMS1-210ENST00000449684 ZC3H6P61129 1189 aaKnown RBP21.94■■□□□ 1.1
LIMS1-210ENST00000449684 ATAD2Q6PL18 1390 aa21.94■■□□□ 1.1
LIMS1-210ENST00000449684 A0A0G2JS52 829 aa21.93■■□□□ 1.1
LIMS1-210ENST00000449684 BRD4O60885 1362 aaPredicted RBP21.93■■□□□ 1.1
LIMS1-210ENST00000449684 MYT1Q01538 1121 aa21.93■■□□□ 1.1
LIMS1-210ENST00000449684 COL14A1Q05707 1796 aaKnown RBP21.92■■□□□ 1.1
LIMS1-210ENST00000449684 KIAA0232Q92628 1395 aa21.91■■□□□ 1.1
LIMS1-210ENST00000449684 ZNF692Q9BU19 519 aaPredicted RBP21.91■■□□□ 1.1
LIMS1-210ENST00000449684 CHRNA2Q15822 529 aa21.9■■□□□ 1.1
LIMS1-210ENST00000449684 USP6P35125 1406 aa21.89■■□□□ 1.1
LIMS1-210ENST00000449684 SBNO2Q9Y2G9 1366 aa21.89■■□□□ 1.1
LIMS1-210ENST00000449684 NLRP6P59044 892 aa21.89■■□□□ 1.09
LIMS1-210ENST00000449684 GLI3P10071 1580 aa21.89■■□□□ 1.09
LIMS1-210ENST00000449684 EVA1CP58658 441 aa21.88■■□□□ 1.09
LIMS1-210ENST00000449684 SEPT12Q8IYM1 358 aa21.88■■□□□ 1.09
LIMS1-210ENST00000449684 TMC1Q8TDI8 760 aa21.88■■□□□ 1.09
LIMS1-210ENST00000449684 CRYBG1Q9Y4K1 1723 aa21.88■■□□□ 1.09
LIMS1-210ENST00000449684 PHRF1Q9P1Y6 1649 aaKnown RBP21.88■■□□□ 1.09
LIMS1-210ENST00000449684 STRN4Q9NRL3 753 aa21.87■■□□□ 1.09
LIMS1-210ENST00000449684 ZBTB7CA1YPR0 619 aa21.86■■□□□ 1.09
LIMS1-210ENST00000449684 SLC24A1O60721 1099 aa21.86■■□□□ 1.09
LIMS1-210ENST00000449684 GCP02774 474 aa21.86■■□□□ 1.09
LIMS1-210ENST00000449684 CLSPNQ9HAW4 1339 aa21.85■■□□□ 1.09
LIMS1-210ENST00000449684 FAM98CQ17RN3 349 aaKnown RBP21.85■■□□□ 1.09
LIMS1-210ENST00000449684 USP19O94966 1318 aa21.84■■□□□ 1.09
LIMS1-210ENST00000449684 ST20-MTHFSA0A0A6YYL1 179 aa21.84■■□□□ 1.09
LIMS1-210ENST00000449684 KTN1Q86UP2 1357 aaKnown RBP21.84■■□□□ 1.09
LIMS1-210ENST00000449684 HDGFL2Q7Z4V5 671 aaPredicted RBP21.83■■□□□ 1.09
LIMS1-210ENST00000449684 TIMELESSQ9UNS1 1208 aa21.83■■□□□ 1.09
LIMS1-210ENST00000449684 NRAPQ86VF7 1730 aa21.83■■□□□ 1.08
LIMS1-210ENST00000449684 TTC21BQ7Z4L5 1316 aa21.82■■□□□ 1.08
LIMS1-210ENST00000449684 ONECUT3O60422 494 aaPredicted RBP21.82■■□□□ 1.08
LIMS1-210ENST00000449684 CCER1Q8TC90 406 aaPredicted RBP21.82■■□□□ 1.08
LIMS1-210ENST00000449684 SPATA31A5Q5VU36 1347 aa21.81■■□□□ 1.08
LIMS1-210ENST00000449684 SPATA31A7Q8IWB4 1347 aa21.81■■□□□ 1.08
LIMS1-210ENST00000449684 TTC21AQ8NDW8 1320 aa21.81■■□□□ 1.08
LIMS1-210ENST00000449684 KRT27Q7Z3Y8 459 aa21.81■■□□□ 1.08
LIMS1-210ENST00000449684 NRKQ7Z2Y5 1582 aa21.81■■□□□ 1.08
LIMS1-210ENST00000449684 CPDO75976 1380 aa21.8■■□□□ 1.08
LIMS1-210ENST00000449684 CCDC125Q86Z20 511 aa21.8■■□□□ 1.08
LIMS1-210ENST00000449684 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.79■■□□□ 1.08
LIMS1-210ENST00000449684 TERF2IPQ9NYB0 399 aa21.79■■□□□ 1.08
LIMS1-210ENST00000449684 USP35Q9P2H5 1018 aa21.79■■□□□ 1.08
LIMS1-210ENST00000449684 SSH2Q76I76 1423 aa21.79■■□□□ 1.08
LIMS1-210ENST00000449684 SOX12O15370 315 aa21.78■■□□□ 1.08
LIMS1-210ENST00000449684 KCNH5Q8NCM2 988 aa21.78■■□□□ 1.08
LIMS1-210ENST00000449684 PUS7Q96PZ0 661 aaKnown RBP21.78■■□□□ 1.08
LIMS1-210ENST00000449684 SLC12A5Q9H2X9 1139 aa21.78■■□□□ 1.08
LIMS1-210ENST00000449684 AKAP12Q02952 1782 aa21.78■■□□□ 1.08
LIMS1-210ENST00000449684 CPSF1Q10570 1443 aaKnown RBP21.78■■□□□ 1.08
LIMS1-210ENST00000449684 SF3B2Q13435 895 aaKnown RBP21.77■■□□□ 1.08
LIMS1-210ENST00000449684 SPATA31A1Q5TZJ5 1347 aa21.77■■□□□ 1.07
LIMS1-210ENST00000449684 BRWD3Q6RI45 1802 aa21.76■■□□□ 1.07
LIMS1-210ENST00000449684 TESK2Q96S53 571 aa21.76■■□□□ 1.07
LIMS1-210ENST00000449684 USP47Q96K76 1375 aa21.75■■□□□ 1.07
LIMS1-210ENST00000449684 TMF1P82094 1093 aa21.75■■□□□ 1.07
LIMS1-210ENST00000449684 PIK3C2AO00443 1686 aa21.75■■□□□ 1.07
LIMS1-210ENST00000449684 LARP1Q6PKG0 1096 aaKnown RBP21.74■■□□□ 1.07
LIMS1-210ENST00000449684 SLIT3O75094 1523 aa21.73■■□□□ 1.07
LIMS1-210ENST00000449684 CAMTA1Q9Y6Y1 1673 aa21.72■■□□□ 1.07
LIMS1-210ENST00000449684 AATKQ6ZMQ8 1374 aa21.71■■□□□ 1.07
LIMS1-210ENST00000449684 NINLQ9Y2I6 1382 aa21.71■■□□□ 1.07
LIMS1-210ENST00000449684 MON2Q7Z3U7 1717 aa21.7■■□□□ 1.06
LIMS1-210ENST00000449684 CDCA8Q53HL2 280 aa21.7■■□□□ 1.06
LIMS1-210ENST00000449684 TCP11L2Q8N4U5 519 aa21.7■■□□□ 1.06
LIMS1-210ENST00000449684 BLMP54132 1417 aaPredicted RBP21.7■■□□□ 1.06
LIMS1-210ENST00000449684 EP400Q96L91 3159 aa21.7■■□□□ 1.06
LIMS1-210ENST00000449684 NME9Q86XW9 330 aa21.69■■□□□ 1.06
LIMS1-210ENST00000449684 A0A1W2PP64 1363 aa21.69■■□□□ 1.06
LIMS1-210ENST00000449684 EDC4Q6P2E9 1401 aaKnown RBP21.69■■□□□ 1.06
LIMS1-210ENST00000449684 LMO7Q8WWI1 1683 aa21.69■■□□□ 1.06
LIMS1-210ENST00000449684 PDE3BQ13370 1112 aa21.68■■□□□ 1.06
LIMS1-210ENST00000449684 BARGINQ6ZT62 677 aa21.68■■□□□ 1.06
LIMS1-210ENST00000449684 TOM1L2Q6ZVM7 507 aa21.68■■□□□ 1.06
LIMS1-210ENST00000449684 ARHGEF25Q86VW2 580 aa21.68■■□□□ 1.06
LIMS1-210ENST00000449684 ZRANB1Q9UGI0 708 aa21.68■■□□□ 1.06
LIMS1-210ENST00000449684 THRAP3Q9Y2W1 955 aaKnown RBP21.68■■□□□ 1.06
LIMS1-210ENST00000449684 COL5A2P05997 1499 aaPredicted RBP21.68■■□□□ 1.06
LIMS1-210ENST00000449684 CD163L1Q9NR16 1453 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms