RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 ABCB7O75027 752 aa14.08□□□□□ -0.16
VIPAS39-203ENST00000448935 PLEKHH1Q9ULM0 1364 aa14.07□□□□□ -0.16
VIPAS39-203ENST00000448935 ADGRB2O60241 1585 aa14.07□□□□□ -0.16
VIPAS39-203ENST00000448935 WASLO00401 505 aaPredicted RBP14.07□□□□□ -0.16
VIPAS39-203ENST00000448935 SPRYD3Q8NCJ5 442 aa14.07□□□□□ -0.16
VIPAS39-203ENST00000448935 NUDCQ9Y266 331 aa14.07□□□□□ -0.16
VIPAS39-203ENST00000448935 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
VIPAS39-203ENST00000448935 KIF20BQ96Q89 1820 aa14.05□□□□□ -0.16
VIPAS39-203ENST00000448935 CD163L1Q9NR16 1453 aa14.05□□□□□ -0.16
VIPAS39-203ENST00000448935 CFAP53Q96M91 514 aa14.04□□□□□ -0.16
VIPAS39-203ENST00000448935 ADAMTS8Q9UP79 889 aa14.04□□□□□ -0.16
VIPAS39-203ENST00000448935 PIK3R4Q99570 1358 aa14.04□□□□□ -0.16
VIPAS39-203ENST00000448935 ERICH6BQ5W0A0 696 aa14.04□□□□□ -0.16
VIPAS39-203ENST00000448935 PTCH1Q13635 1447 aa14.03□□□□□ -0.16
VIPAS39-203ENST00000448935 PELP1Q8IZL8 1130 aaKnown RBP14.03□□□□□ -0.16
VIPAS39-203ENST00000448935 NGEFQ8N5V2 710 aa14.03□□□□□ -0.16
VIPAS39-203ENST00000448935 CABP1Q9NZU7 370 aa14.03□□□□□ -0.16
VIPAS39-203ENST00000448935 C1QBPQ07021 282 aaKnown RBP14.02□□□□□ -0.16
VIPAS39-203ENST00000448935 ROBO2Q9HCK4 1378 aa14.02□□□□□ -0.17
VIPAS39-203ENST00000448935 PPIP5K1Q6PFW1 1433 aa14.02□□□□□ -0.17
VIPAS39-203ENST00000448935 ITSN1Q15811 1721 aa14.02□□□□□ -0.17
VIPAS39-203ENST00000448935 SLC26A8Q96RN1 970 aa14.01□□□□□ -0.17
VIPAS39-203ENST00000448935 CCDC61Q9Y6R9 512 aa14.01□□□□□ -0.17
VIPAS39-203ENST00000448935 CDC42BPGQ6DT37 1551 aa14.01□□□□□ -0.17
VIPAS39-203ENST00000448935 ANKLE2Q86XL3 938 aa14.01□□□□□ -0.17
VIPAS39-203ENST00000448935 XRN1Q8IZH2 1706 aaKnown RBP14□□□□□ -0.17
VIPAS39-203ENST00000448935 SIPA1L2Q9P2F8 1722 aaPredicted RBP14□□□□□ -0.17
VIPAS39-203ENST00000448935 EDC4Q6P2E9 1401 aaKnown RBP14□□□□□ -0.17
VIPAS39-203ENST00000448935 PTPRUQ92729 1446 aa14□□□□□ -0.17
VIPAS39-203ENST00000448935 NUDT16Q96DE0 195 aaKnown RBP14□□□□□ -0.17
VIPAS39-203ENST00000448935 AMOTL2Q9Y2J4 779 aa14□□□□□ -0.17
VIPAS39-203ENST00000448935 AKAP12Q02952 1782 aa13.99□□□□□ -0.17
VIPAS39-203ENST00000448935 MON2Q7Z3U7 1717 aa13.99□□□□□ -0.17
VIPAS39-203ENST00000448935 CPSF1Q10570 1443 aaKnown RBP13.99□□□□□ -0.17
VIPAS39-203ENST00000448935 TSHZ2Q9NRE2 1034 aa13.99□□□□□ -0.17
VIPAS39-203ENST00000448935 SHPRHQ149N8 1683 aa13.99□□□□□ -0.17
VIPAS39-203ENST00000448935 FYB1O15117 783 aa13.98□□□□□ -0.17
VIPAS39-203ENST00000448935 TOPAZ1Q8N9V7 1692 aa13.98□□□□□ -0.17
VIPAS39-203ENST00000448935 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
VIPAS39-203ENST00000448935 MTHFSP49914 203 aa13.97□□□□□ -0.17
VIPAS39-203ENST00000448935 SPDYE2BA6NHP3 402 aa13.97□□□□□ -0.17
VIPAS39-203ENST00000448935 SPDYE6P0CI01 402 aa13.97□□□□□ -0.17
VIPAS39-203ENST00000448935 SPDYE2Q495Y8 402 aa13.97□□□□□ -0.17
VIPAS39-203ENST00000448935 GGNBP2Q9H3C7 697 aa13.97□□□□□ -0.17
VIPAS39-203ENST00000448935 SSUH2Q9Y2M2 353 aa13.96□□□□□ -0.17
VIPAS39-203ENST00000448935 CHD2O14647 1828 aaKnown RBP13.95□□□□□ -0.18
VIPAS39-203ENST00000448935 SALL2Q9Y467 1007 aaPredicted RBP13.94□□□□□ -0.18
VIPAS39-203ENST00000448935 PLEKHG3A1L390 1219 aa13.93□□□□□ -0.18
VIPAS39-203ENST00000448935 RNF123Q5XPI4 1314 aa13.93□□□□□ -0.18
VIPAS39-203ENST00000448935 RUNDC1Q96C34 613 aa13.92□□□□□ -0.18
VIPAS39-203ENST00000448935 ZNF521Q96K83 1311 aa13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 PRR36Q9H6K5 1346 aa13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 ANKARQ7Z5J8 1434 aa13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 SENP3-EIF4A1A0A087X0R7 540 aa13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 GOLGA2Q08379 1002 aa13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 PNNQ9H307 717 aaKnown RBP13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 CIZ1Q9ULV3 898 aaPredicted RBP13.91□□□□□ -0.18
VIPAS39-203ENST00000448935 NRKQ7Z2Y5 1582 aa13.9□□□□□ -0.18
VIPAS39-203ENST00000448935 APAF1O14727 1248 aa13.9□□□□□ -0.18
VIPAS39-203ENST00000448935 CCDC146Q8IYE0 955 aa13.9□□□□□ -0.18
VIPAS39-203ENST00000448935 NPHP4O75161 1426 aaPredicted RBP13.9□□□□□ -0.18
VIPAS39-203ENST00000448935 AATKQ6ZMQ8 1374 aa13.9□□□□□ -0.18
VIPAS39-203ENST00000448935 COG3Q96JB2 828 aa13.9□□□□□ -0.19
VIPAS39-203ENST00000448935 RCAN3Q9UKA8 241 aa13.9□□□□□ -0.19
VIPAS39-203ENST00000448935 MAP2P11137 1827 aaKnown RBP13.89□□□□□ -0.19
VIPAS39-203ENST00000448935 COL3A1P02461 1466 aaPredicted RBP13.89□□□□□ -0.19
VIPAS39-203ENST00000448935 PNPLA6Q8IY17 1366 aa13.89□□□□□ -0.19
VIPAS39-203ENST00000448935 KCNA6P17658 529 aa13.89□□□□□ -0.19
VIPAS39-203ENST00000448935 ZBTB47Q9UFB7 747 aaPredicted RBP13.89□□□□□ -0.19
VIPAS39-203ENST00000448935 FMN2Q9NZ56 1722 aa13.88□□□□□ -0.19
VIPAS39-203ENST00000448935 PPP4R2Q9NY27 417 aa13.88□□□□□ -0.19
VIPAS39-203ENST00000448935 ACEP12821 1306 aa13.88□□□□□ -0.19
VIPAS39-203ENST00000448935 DIAPH1O60610 1272 aaKnown RBP13.87□□□□□ -0.19
VIPAS39-203ENST00000448935 U2AF1L5P0DN76 240 aaPredicted RBP13.87□□□□□ -0.19
VIPAS39-203ENST00000448935 USP6P35125 1406 aa13.87□□□□□ -0.19
VIPAS39-203ENST00000448935 U2AF1Q01081 240 aaKnown RBP eCLIP13.87□□□□□ -0.19
VIPAS39-203ENST00000448935 CDCA7LQ96GN5 454 aa13.87□□□□□ -0.19
VIPAS39-203ENST00000448935 IQSEC2Q5JU85 1478 aa13.87□□□□□ -0.19
VIPAS39-203ENST00000448935 PLEKHG5O94827 1062 aa13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 TTC21BQ7Z4L5 1316 aa13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 TTC21AQ8NDW8 1320 aa13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 E9PSI1 815 aa13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 IRX6P78412 446 aaPredicted RBP13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 CCDC27Q2M243 656 aa13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 NME9Q86XW9 330 aa13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 NKTRP30414 1462 aaKnown RBP13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 CDK12Q9NYV4 1490 aaPredicted RBP13.86□□□□□ -0.19
VIPAS39-203ENST00000448935 NCKAP5LQ9HCH0 1330 aa13.85□□□□□ -0.19
VIPAS39-203ENST00000448935 SLFN5Q08AF3 891 aa13.85□□□□□ -0.19
VIPAS39-203ENST00000448935 FBXO41Q8TF61 875 aa13.85□□□□□ -0.19
VIPAS39-203ENST00000448935 POLKQ9UBT6 870 aa13.85□□□□□ -0.19
VIPAS39-203ENST00000448935 RGPD8O14715 1765 aaPredicted RBP13.85□□□□□ -0.19
VIPAS39-203ENST00000448935 NALCNQ8IZF0 1738 aa13.84□□□□□ -0.19
VIPAS39-203ENST00000448935 U2SURPO15042 1029 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-203ENST00000448935 RRP1P56182 461 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-203ENST00000448935 DUSP27Q5VZP5 1158 aa13.84□□□□□ -0.19
VIPAS39-203ENST00000448935 TCP11L2Q8N4U5 519 aa13.84□□□□□ -0.19
VIPAS39-203ENST00000448935 NWD1Q149M9 1564 aa13.84□□□□□ -0.19
VIPAS39-203ENST00000448935 TRMT2AQ8IZ69 625 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms