RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 ATAD2Q6PL18 1390 aa24.19■■□□□ 1.46
SDCBP-204ENST00000447182 CLTCQ00610 1675 aaKnown RBP24.18■■□□□ 1.46
SDCBP-204ENST00000447182 SMC5Q8IY18 1101 aa24.17■■□□□ 1.46
SDCBP-204ENST00000447182 U2SURPO15042 1029 aaKnown RBP24.17■■□□□ 1.46
SDCBP-204ENST00000447182 NPM1P06748 294 aaKnown RBP eCLIP24.17■■□□□ 1.46
SDCBP-204ENST00000447182 NUTM2DQ5VT03 806 aaPredicted RBP24.16■■□□□ 1.46
SDCBP-204ENST00000447182 C22orf23Q9BZE7 217 aa24.16■■□□□ 1.46
SDCBP-204ENST00000447182 PTPRMP28827 1452 aa24.15■■□□□ 1.46
SDCBP-204ENST00000447182 FAM43AQ8N2R8 423 aa24.15■■□□□ 1.46
SDCBP-204ENST00000447182 GGNBP2Q9H3C7 697 aa24.15■■□□□ 1.46
SDCBP-204ENST00000447182 CD163L1Q9NR16 1453 aa24.15■■□□□ 1.46
SDCBP-204ENST00000447182 PNPLA6Q8IY17 1366 aa24.15■■□□□ 1.46
SDCBP-204ENST00000447182 ITPRIPQ8IWB1 547 aa24.14■■□□□ 1.46
SDCBP-204ENST00000447182 TERF2IPQ9NYB0 399 aa24.14■■□□□ 1.46
SDCBP-204ENST00000447182 FYB1O15117 783 aa24.14■■□□□ 1.45
SDCBP-204ENST00000447182 SRPK2P78362 688 aaKnown RBP24.14■■□□□ 1.45
SDCBP-204ENST00000447182 PNNQ9H307 717 aaKnown RBP24.14■■□□□ 1.45
SDCBP-204ENST00000447182 DIP2CQ9Y2E4 1556 aa24.14■■□□□ 1.45
SDCBP-204ENST00000447182 KIF16BQ96L93 1317 aa24.13■■□□□ 1.45
SDCBP-204ENST00000447182 NEO1Q92859 1461 aa24.13■■□□□ 1.45
SDCBP-204ENST00000447182 L1TD1Q5T7N2 865 aaKnown RBP24.13■■□□□ 1.45
SDCBP-204ENST00000447182 SLC52A1Q9NWF4 448 aa24.13■■□□□ 1.45
SDCBP-204ENST00000447182 NOB1Q9ULX3 412 aaKnown RBP24.13■■□□□ 1.45
SDCBP-204ENST00000447182 IDI1Q13907 227 aa24.13■■□□□ 1.45
SDCBP-204ENST00000447182 ZBTB40Q9NUA8 1239 aa24.13■■□□□ 1.45
SDCBP-204ENST00000447182 SAFB2Q14151 953 aaKnown RBP eCLIP24.11■■□□□ 1.45
SDCBP-204ENST00000447182 CDC42BPGQ6DT37 1551 aa24.11■■□□□ 1.45
SDCBP-204ENST00000447182 IPO8O15397 1037 aaKnown RBP24.11■■□□□ 1.45
SDCBP-204ENST00000447182 RIPK4P57078 832 aa24.1■■□□□ 1.45
SDCBP-204ENST00000447182 ALDH1L2Q3SY69 923 aa24.1■■□□□ 1.45
SDCBP-204ENST00000447182 TMEM57Q8N5G2 664 aa24.1■■□□□ 1.45
SDCBP-204ENST00000447182 DIAPH1O60610 1272 aaKnown RBP24.09■■□□□ 1.45
SDCBP-204ENST00000447182 MYO5BQ9ULV0 1848 aa24.09■■□□□ 1.45
SDCBP-204ENST00000447182 TMEM131LA2VDJ0 1609 aa24.08■■□□□ 1.45
SDCBP-204ENST00000447182 MFAP1P55081 439 aaKnown RBP24.08■■□□□ 1.45
SDCBP-204ENST00000447182 CHMP5Q9NZZ3 219 aa24.08■■□□□ 1.45
SDCBP-204ENST00000447182 BRPF1P55201 1214 aaPredicted RBP24.08■■□□□ 1.45
SDCBP-204ENST00000447182 MCM4P33991 863 aa24.07■■□□□ 1.44
SDCBP-204ENST00000447182 ZNF428Q96B54 188 aa24.07■■□□□ 1.44
SDCBP-204ENST00000447182 STK26Q9P289 416 aa24.07■■□□□ 1.44
SDCBP-204ENST00000447182 YTHDC2Q9H6S0 1430 aaKnown RBP24.07■■□□□ 1.44
SDCBP-204ENST00000447182 KIF20BQ96Q89 1820 aa24.07■■□□□ 1.44
SDCBP-204ENST00000447182 NUCB1Q02818 461 aa24.06■■□□□ 1.44
SDCBP-204ENST00000447182 PPIP5K1Q6PFW1 1433 aa24.06■■□□□ 1.44
SDCBP-204ENST00000447182 FCHSD2O94868 740 aa24.05■■□□□ 1.44
SDCBP-204ENST00000447182 HDGFL2Q7Z4V5 671 aaPredicted RBP24.04■■□□□ 1.44
SDCBP-204ENST00000447182 PREX1Q8TCU6 1659 aa24.04■■□□□ 1.44
SDCBP-204ENST00000447182 PRAM1Q96QH2 718 aa24.04■■□□□ 1.44
SDCBP-204ENST00000447182 RAPGEF3O95398 923 aa24.03■■□□□ 1.44
SDCBP-204ENST00000447182 RBM25P49756 843 aaKnown RBP24.03■■□□□ 1.44
SDCBP-204ENST00000447182 MINK1Q8N4C8 1332 aaPredicted RBP24.03■■□□□ 1.44
SDCBP-204ENST00000447182 LRRC7Q96NW7 1537 aa24.03■■□□□ 1.44
SDCBP-204ENST00000447182 NCOA3Q9Y6Q9 1424 aa24.02■■□□□ 1.44
SDCBP-204ENST00000447182 ARHGEF40Q8TER5 1519 aa24.02■■□□□ 1.44
SDCBP-204ENST00000447182 FAM135BQ49AJ0 1406 aa24.02■■□□□ 1.44
SDCBP-204ENST00000447182 RICTORQ6R327 1708 aa24.01■■□□□ 1.43
SDCBP-204ENST00000447182 FSD2A1L4K1 749 aa24.01■■□□□ 1.43
SDCBP-204ENST00000447182 HSCBQ8IWL3 235 aa24.01■■□□□ 1.43
SDCBP-204ENST00000447182 SNX21Q969T3 373 aa24■■□□□ 1.43
SDCBP-204ENST00000447182 SPRYD3Q8NCJ5 442 aa23.99■■□□□ 1.43
SDCBP-204ENST00000447182 ZNF692Q9BU19 519 aaPredicted RBP23.99■■□□□ 1.43
SDCBP-204ENST00000447182 CHD1LQ86WJ1 897 aa23.99■■□□□ 1.43
SDCBP-204ENST00000447182 RSPH6AQ9H0K4 717 aa23.98■■□□□ 1.43
SDCBP-204ENST00000447182 ALKQ9UM73 1620 aa23.98■■□□□ 1.43
SDCBP-204ENST00000447182 PIK3R4Q99570 1358 aa23.98■■□□□ 1.43
SDCBP-204ENST00000447182 DDIT3P35638 169 aa23.98■■□□□ 1.43
SDCBP-204ENST00000447182 CHMP4BQ9H444 224 aaKnown RBP23.98■■□□□ 1.43
SDCBP-204ENST00000447182 ARHGAP45Q92619 1136 aa23.97■■□□□ 1.43
SDCBP-204ENST00000447182 CDK19Q9BWU1 502 aa23.97■■□□□ 1.43
SDCBP-204ENST00000447182 GOLGA6L3A6NEY3 463 aa23.96■■□□□ 1.43
SDCBP-204ENST00000447182 BMP2KLQ5H9B9 411 aa23.96■■□□□ 1.43
SDCBP-204ENST00000447182 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.96■■□□□ 1.43
SDCBP-204ENST00000447182 PTCH1Q13635 1447 aa23.95■■□□□ 1.43
SDCBP-204ENST00000447182 GCC1Q96CN9 775 aa23.95■■□□□ 1.42
SDCBP-204ENST00000447182 LNPKQ9C0E8 428 aa23.95■■□□□ 1.42
SDCBP-204ENST00000447182 CABP1Q9NZU7 370 aa23.95■■□□□ 1.42
SDCBP-204ENST00000447182 ATP7BP35670 1465 aa23.95■■□□□ 1.42
SDCBP-204ENST00000447182 TRAK2O60296 914 aa23.94■■□□□ 1.42
SDCBP-204ENST00000447182 XRCC6P12956 609 aaKnown RBP eCLIP23.94■■□□□ 1.42
SDCBP-204ENST00000447182 PRKAR2BP31323 418 aa23.94■■□□□ 1.42
SDCBP-204ENST00000447182 DDX11L8A8MPP1 907 aa23.93■■□□□ 1.42
SDCBP-204ENST00000447182 ZBTB7BO15156 539 aaPredicted RBP23.93■■□□□ 1.42
SDCBP-204ENST00000447182 CALD1Q05682 793 aaKnown RBP23.93■■□□□ 1.42
SDCBP-204ENST00000447182 POLKQ9UBT6 870 aa23.93■■□□□ 1.42
SDCBP-204ENST00000447182 DLC1Q96QB1 1528 aa23.92■■□□□ 1.42
SDCBP-204ENST00000447182 NFE2L2Q16236 605 aa23.92■■□□□ 1.42
SDCBP-204ENST00000447182 YEATS2Q9ULM3 1422 aa23.92■■□□□ 1.42
SDCBP-204ENST00000447182 VAMP4O75379 141 aa23.92■■□□□ 1.42
SDCBP-204ENST00000447182 MRPL50Q8N5N7 158 aaKnown RBP23.92■■□□□ 1.42
SDCBP-204ENST00000447182 CIZ1Q9ULV3 898 aaPredicted RBP23.91■■□□□ 1.42
SDCBP-204ENST00000447182 REREQ9P2R6 1566 aa23.9■■□□□ 1.42
SDCBP-204ENST00000447182 MAP2P11137 1827 aaKnown RBP23.89■■□□□ 1.42
SDCBP-204ENST00000447182 IFT57Q9NWB7 429 aa23.89■■□□□ 1.42
SDCBP-204ENST00000447182 GNAI1P63096 354 aa23.88■■□□□ 1.41
SDCBP-204ENST00000447182 ISY1Q9ULR0 285 aaKnown RBP23.88■■□□□ 1.41
SDCBP-204ENST00000447182 ZNF853P0CG23 659 aa23.87■■□□□ 1.41
SDCBP-204ENST00000447182 ABCC4O15439 1325 aa23.87■■□□□ 1.41
SDCBP-204ENST00000447182 RRAGDQ9NQL2 400 aaPredicted RBP23.87■■□□□ 1.41
SDCBP-204ENST00000447182 PHACTR3Q96KR7 559 aa23.86■■□□□ 1.41
SDCBP-204ENST00000447182 KIF2CQ99661 725 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms