RNA–Protein interactions for RNA: ENST00000444532.2

CCDC188-202, Transcript of coiled-coil domain containing 188, humanhuman

TSL 3

Gene CCDC188, Length 628 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188-202ENST00000444532 ABCA3Q99758 1704 aa26.39■■□□□ 1.81
CCDC188-202ENST00000444532 CCER1Q8TC90 406 aaPredicted RBP26.37■■□□□ 1.81
CCDC188-202ENST00000444532 CABP1Q9NZU7 370 aa26.37■■□□□ 1.81
CCDC188-202ENST00000444532 PLEKHG5O94827 1062 aa26.35■■□□□ 1.81
CCDC188-202ENST00000444532 BRD4O60885 1362 aaPredicted RBP26.34■■□□□ 1.81
CCDC188-202ENST00000444532 RBM6P78332 1123 aaKnown RBP26.34■■□□□ 1.81
CCDC188-202ENST00000444532 TRPC5Q9UL62 973 aaPredicted RBP26.34■■□□□ 1.81
CCDC188-202ENST00000444532 ATAD2Q6PL18 1390 aa26.33■■□□□ 1.81
CCDC188-202ENST00000444532 BCL9LQ86UU0 1499 aa26.33■■□□□ 1.81
CCDC188-202ENST00000444532 CDK12Q9NYV4 1490 aaPredicted RBP26.33■■□□□ 1.81
CCDC188-202ENST00000444532 SLIT2O94813 1529 aa26.31■■□□□ 1.8
CCDC188-202ENST00000444532 CRYBG1Q9Y4K1 1723 aa26.31■■□□□ 1.8
CCDC188-202ENST00000444532 SLC24A1O60721 1099 aa26.3■■□□□ 1.8
CCDC188-202ENST00000444532 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.3■■□□□ 1.8
CCDC188-202ENST00000444532 ATRNO75882 1429 aa26.3■■□□□ 1.8
CCDC188-202ENST00000444532 ZNF692Q9BU19 519 aaPredicted RBP26.29■■□□□ 1.8
CCDC188-202ENST00000444532 ST20-MTHFSA0A0A6YYL1 179 aa26.28■■□□□ 1.8
CCDC188-202ENST00000444532 UNC5CLQ8IV45 518 aa26.28■■□□□ 1.8
CCDC188-202ENST00000444532 ABTB2Q8N961 1025 aa26.28■■□□□ 1.8
CCDC188-202ENST00000444532 USP6P35125 1406 aa26.28■■□□□ 1.8
CCDC188-202ENST00000444532 FAM83GA6ND36 823 aa26.27■■□□□ 1.8
CCDC188-202ENST00000444532 PUS7Q96PZ0 661 aaKnown RBP26.27■■□□□ 1.8
CCDC188-202ENST00000444532 NWD2Q9ULI1 1742 aa26.27■■□□□ 1.8
CCDC188-202ENST00000444532 PLCH1Q4KWH8 1693 aa26.25■■□□□ 1.79
CCDC188-202ENST00000444532 NUTM2GQ5VZR2 741 aa26.25■■□□□ 1.79
CCDC188-202ENST00000444532 TESK2Q96S53 571 aa26.25■■□□□ 1.79
CCDC188-202ENST00000444532 AKAP12Q02952 1782 aa26.25■■□□□ 1.79
CCDC188-202ENST00000444532 COL14A1Q05707 1796 aaKnown RBP26.23■■□□□ 1.79
CCDC188-202ENST00000444532 NLRP13Q86W25 1043 aa26.23■■□□□ 1.79
CCDC188-202ENST00000444532 PHRF1Q9P1Y6 1649 aaKnown RBP26.23■■□□□ 1.79
CCDC188-202ENST00000444532 SSH2Q76I76 1423 aa26.22■■□□□ 1.79
CCDC188-202ENST00000444532 USP47Q96K76 1375 aa26.22■■□□□ 1.79
CCDC188-202ENST00000444532 GJD4Q96KN9 370 aaPredicted RBP26.22■■□□□ 1.79
CCDC188-202ENST00000444532 CPSF1Q10570 1443 aaKnown RBP26.22■■□□□ 1.79
CCDC188-202ENST00000444532 RGS12O14924 1447 aa26.2■■□□□ 1.78
CCDC188-202ENST00000444532 USP19O94966 1318 aa26.19■■□□□ 1.78
CCDC188-202ENST00000444532 PRDM11Q9NQV5 511 aa26.19■■□□□ 1.78
CCDC188-202ENST00000444532 VPS72Q15906 364 aa26.18■■□□□ 1.78
CCDC188-202ENST00000444532 KTN1Q86UP2 1357 aaKnown RBP26.18■■□□□ 1.78
CCDC188-202ENST00000444532 NLRP6P59044 892 aa26.17■■□□□ 1.78
CCDC188-202ENST00000444532 TMC1Q8TDI8 760 aa26.17■■□□□ 1.78
CCDC188-202ENST00000444532 BTG4Q9NY30 223 aa26.17■■□□□ 1.78
CCDC188-202ENST00000444532 KIAA0232Q92628 1395 aa26.17■■□□□ 1.78
CCDC188-202ENST00000444532 TTC21BQ7Z4L5 1316 aa26.16■■□□□ 1.78
CCDC188-202ENST00000444532 TTC21AQ8NDW8 1320 aa26.16■■□□□ 1.78
CCDC188-202ENST00000444532 MON2Q7Z3U7 1717 aa26.15■■□□□ 1.78
CCDC188-202ENST00000444532 NRAPQ86VF7 1730 aa26.15■■□□□ 1.78
CCDC188-202ENST00000444532 GCP02774 474 aa26.15■■□□□ 1.78
CCDC188-202ENST00000444532 ZC3H6P61129 1189 aaKnown RBP26.15■■□□□ 1.78
CCDC188-202ENST00000444532 TMF1P82094 1093 aa26.15■■□□□ 1.78
CCDC188-202ENST00000444532 SLC12A5Q9H2X9 1139 aa26.15■■□□□ 1.78
CCDC188-202ENST00000444532 NRKQ7Z2Y5 1582 aa26.15■■□□□ 1.78
CCDC188-202ENST00000444532 PIK3C2AO00443 1686 aa26.15■■□□□ 1.78
CCDC188-202ENST00000444532 HDGFL2Q7Z4V5 671 aaPredicted RBP26.14■■□□□ 1.78
CCDC188-202ENST00000444532 GLI3P10071 1580 aa26.13■■□□□ 1.77
CCDC188-202ENST00000444532 CD163L1Q9NR16 1453 aa26.13■■□□□ 1.77
CCDC188-202ENST00000444532 CPDO75976 1380 aa26.13■■□□□ 1.77
CCDC188-202ENST00000444532 NINLQ9Y2I6 1382 aa26.13■■□□□ 1.77
CCDC188-202ENST00000444532 TERF2IPQ9NYB0 399 aa26.13■■□□□ 1.77
CCDC188-202ENST00000444532 CHRNA2Q15822 529 aa26.11■■□□□ 1.77
CCDC188-202ENST00000444532 CCDC9Q9Y3X0 531 aaKnown RBP26.11■■□□□ 1.77
CCDC188-202ENST00000444532 SLIT3O75094 1523 aa26.09■■□□□ 1.77
CCDC188-202ENST00000444532 CDCA8Q53HL2 280 aa26.09■■□□□ 1.77
CCDC188-202ENST00000444532 ONECUT3O60422 494 aaPredicted RBP26.07■■□□□ 1.76
CCDC188-202ENST00000444532 EDC4Q6P2E9 1401 aaKnown RBP26.06■■□□□ 1.76
CCDC188-202ENST00000444532 KCNH5Q8NCM2 988 aa26.06■■□□□ 1.76
CCDC188-202ENST00000444532 A0A1W2PP64 1363 aa26.06■■□□□ 1.76
CCDC188-202ENST00000444532 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.05■■□□□ 1.76
CCDC188-202ENST00000444532 UPF1Q92900 1129 aaKnown RBP eCLIP26.05■■□□□ 1.76
CCDC188-202ENST00000444532 LMO7Q8WWI1 1683 aa26.04■■□□□ 1.76
CCDC188-202ENST00000444532 SPATA31A5Q5VU36 1347 aa26.03■■□□□ 1.76
CCDC188-202ENST00000444532 SPATA31A7Q8IWB4 1347 aa26.03■■□□□ 1.76
CCDC188-202ENST00000444532 USP31Q70CQ4 1352 aa26.03■■□□□ 1.76
CCDC188-202ENST00000444532 EVA1CP58658 441 aa26.02■■□□□ 1.76
CCDC188-202ENST00000444532 USP54Q70EL1 1684 aa26.02■■□□□ 1.76
CCDC188-202ENST00000444532 CAMTA1Q9Y6Y1 1673 aa26.02■■□□□ 1.76
CCDC188-202ENST00000444532 EIF4G2P78344 907 aaKnown RBP eCLIP26.01■■□□□ 1.75
CCDC188-202ENST00000444532 SEPT12Q8IYM1 358 aa26.01■■□□□ 1.75
CCDC188-202ENST00000444532 STRN4Q9NRL3 753 aa26.01■■□□□ 1.75
CCDC188-202ENST00000444532 AATKQ6ZMQ8 1374 aa26■■□□□ 1.75
CCDC188-202ENST00000444532 ANKRD36BQ8N2N9 1353 aa25.99■■□□□ 1.75
CCDC188-202ENST00000444532 NME9Q86XW9 330 aa25.99■■□□□ 1.75
CCDC188-202ENST00000444532 BRWD3Q6RI45 1802 aa25.98■■□□□ 1.75
CCDC188-202ENST00000444532 FAM98CQ17RN3 349 aaKnown RBP25.98■■□□□ 1.75
CCDC188-202ENST00000444532 ARHGEF25Q86VW2 580 aa25.98■■□□□ 1.75
CCDC188-202ENST00000444532 SPATA31A1Q5TZJ5 1347 aa25.97■■□□□ 1.75
CCDC188-202ENST00000444532 ZRANB1Q9UGI0 708 aa25.97■■□□□ 1.75
CCDC188-202ENST00000444532 ZBTB7CA1YPR0 619 aa25.96■■□□□ 1.75
CCDC188-202ENST00000444532 NFAT5O94916 1531 aa25.96■■□□□ 1.75
CCDC188-202ENST00000444532 COL18A1P39060 1754 aa25.96■■□□□ 1.75
CCDC188-202ENST00000444532 COL5A2P05997 1499 aaPredicted RBP25.94■■□□□ 1.74
CCDC188-202ENST00000444532 SOX12O15370 315 aa25.94■■□□□ 1.74
CCDC188-202ENST00000444532 HSPA5P11021 654 aaKnown RBP25.94■■□□□ 1.74
CCDC188-202ENST00000444532 LARP1Q6PKG0 1096 aaKnown RBP25.94■■□□□ 1.74
CCDC188-202ENST00000444532 A0A0G2JS52 829 aa25.93■■□□□ 1.74
CCDC188-202ENST00000444532 MYT1Q01538 1121 aa25.93■■□□□ 1.74
CCDC188-202ENST00000444532 KRT27Q7Z3Y8 459 aa25.91■■□□□ 1.74
CCDC188-202ENST00000444532 MYOM1P52179 1685 aa25.9■■□□□ 1.74
CCDC188-202ENST00000444532 OVOS2A0A0J9YW53 1432 aa25.9■■□□□ 1.74
CCDC188-202ENST00000444532 OVOS2Q6IE36 1432 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms