RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 UPF1Q92900 1129 aaKnown RBP eCLIP15.68■□□□□ 0.1
SF3A1-203ENST00000444440 TRPC5Q9UL62 973 aaPredicted RBP15.68■□□□□ 0.1
SF3A1-203ENST00000444440 RALGAPBQ86X10 1494 aa15.67■□□□□ 0.1
SF3A1-203ENST00000444440 GPRASP1Q5JY77 1395 aa15.67■□□□□ 0.1
SF3A1-203ENST00000444440 NGDNQ8NEJ9 315 aaKnown RBP15.67■□□□□ 0.1
SF3A1-203ENST00000444440 NRKQ7Z2Y5 1582 aa15.66■□□□□ 0.1
SF3A1-203ENST00000444440 ROCK2O75116 1388 aaKnown RBP15.66■□□□□ 0.1
SF3A1-203ENST00000444440 ACEP12821 1306 aa15.66■□□□□ 0.1
SF3A1-203ENST00000444440 PIK3C2AO00443 1686 aa15.65■□□□□ 0.1
SF3A1-203ENST00000444440 CABP2Q9NPB3 220 aa15.65■□□□□ 0.1
SF3A1-203ENST00000444440 PPIP5K1Q6PFW1 1433 aa15.65■□□□□ 0.1
SF3A1-203ENST00000444440 UNC5CLQ8IV45 518 aa15.64■□□□□ 0.09
SF3A1-203ENST00000444440 MON2Q7Z3U7 1717 aa15.63■□□□□ 0.09
SF3A1-203ENST00000444440 PLEKHG3A1L390 1219 aa15.63■□□□□ 0.09
SF3A1-203ENST00000444440 FAM83GA6ND36 823 aa15.63■□□□□ 0.09
SF3A1-203ENST00000444440 PAK3O75914 559 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-203ENST00000444440 HAP1P54257 671 aaPredicted RBP15.63■□□□□ 0.09
SF3A1-203ENST00000444440 CCDC61Q9Y6R9 512 aa15.63■□□□□ 0.09
SF3A1-203ENST00000444440 RGPD5Q99666 1765 aa15.62■□□□□ 0.09
SF3A1-203ENST00000444440 GJD4Q96KN9 370 aaPredicted RBP15.62■□□□□ 0.09
SF3A1-203ENST00000444440 LMO7Q8WWI1 1683 aa15.62■□□□□ 0.09
SF3A1-203ENST00000444440 SRPK2P78362 688 aaKnown RBP15.61■□□□□ 0.09
SF3A1-203ENST00000444440 NUTM2GQ5VZR2 741 aa15.61■□□□□ 0.09
SF3A1-203ENST00000444440 TONSLQ96HA7 1378 aa15.59■□□□□ 0.09
SF3A1-203ENST00000444440 THSD7AQ9UPZ6 1657 aa15.58■□□□□ 0.08
SF3A1-203ENST00000444440 COL18A1P39060 1754 aa15.58■□□□□ 0.08
SF3A1-203ENST00000444440 USP6P35125 1406 aa15.58■□□□□ 0.08
SF3A1-203ENST00000444440 VPS72Q15906 364 aa15.57■□□□□ 0.08
SF3A1-203ENST00000444440 BTG4Q9NY30 223 aa15.57■□□□□ 0.08
SF3A1-203ENST00000444440 CABP1Q9NZU7 370 aa15.57■□□□□ 0.08
SF3A1-203ENST00000444440 KIAA0232Q92628 1395 aa15.57■□□□□ 0.08
SF3A1-203ENST00000444440 SSH2Q76I76 1423 aa15.57■□□□□ 0.08
SF3A1-203ENST00000444440 ATAD2Q6PL18 1390 aa15.56■□□□□ 0.08
SF3A1-203ENST00000444440 SLIT3O75094 1523 aa15.56■□□□□ 0.08
SF3A1-203ENST00000444440 WNK3Q9BYP7 1800 aa15.55■□□□□ 0.08
SF3A1-203ENST00000444440 CAMTA1Q9Y6Y1 1673 aa15.55■□□□□ 0.08
SF3A1-203ENST00000444440 USP19O94966 1318 aa15.55■□□□□ 0.08
SF3A1-203ENST00000444440 EVC2Q86UK5 1308 aa15.55■□□□□ 0.08
SF3A1-203ENST00000444440 USP54Q70EL1 1684 aa15.54■□□□□ 0.08
SF3A1-203ENST00000444440 CHRNA2Q15822 529 aa15.54■□□□□ 0.08
SF3A1-203ENST00000444440 CARD11Q9BXL7 1154 aa15.54■□□□□ 0.08
SF3A1-203ENST00000444440 CD163L1Q9NR16 1453 aa15.53■□□□□ 0.08
SF3A1-203ENST00000444440 SBNO2Q9Y2G9 1366 aa15.53■□□□□ 0.08
SF3A1-203ENST00000444440 ZC3H6P61129 1189 aaKnown RBP15.53■□□□□ 0.08
SF3A1-203ENST00000444440 LTN1O94822 1766 aa15.52■□□□□ 0.08
SF3A1-203ENST00000444440 SEPT12Q8IYM1 358 aa15.52■□□□□ 0.08
SF3A1-203ENST00000444440 ABTB2Q8N961 1025 aa15.52■□□□□ 0.08
SF3A1-203ENST00000444440 PRDM11Q9NQV5 511 aa15.52■□□□□ 0.08
SF3A1-203ENST00000444440 CCDC9Q9Y3X0 531 aaKnown RBP15.52■□□□□ 0.08
SF3A1-203ENST00000444440 CPSF1Q10570 1443 aaKnown RBP15.51■□□□□ 0.07
SF3A1-203ENST00000444440 TNS1Q9HBL0 1735 aaKnown RBP15.51■□□□□ 0.07
SF3A1-203ENST00000444440 ONECUT3O60422 494 aaPredicted RBP15.51■□□□□ 0.07
SF3A1-203ENST00000444440 BRD4O60885 1362 aaPredicted RBP15.49■□□□□ 0.07
SF3A1-203ENST00000444440 SPATA31A5Q5VU36 1347 aa15.49■□□□□ 0.07
SF3A1-203ENST00000444440 SPATA31A7Q8IWB4 1347 aa15.49■□□□□ 0.07
SF3A1-203ENST00000444440 FAM98CQ17RN3 349 aaKnown RBP15.49■□□□□ 0.07
SF3A1-203ENST00000444440 CPDO75976 1380 aa15.49■□□□□ 0.07
SF3A1-203ENST00000444440 RGPD1P0DJD0 1748 aa15.48■□□□□ 0.07
SF3A1-203ENST00000444440 NFAT5O94916 1531 aa15.48■□□□□ 0.07
SF3A1-203ENST00000444440 PARP4Q9UKK3 1724 aaKnown RBP15.48■□□□□ 0.07
SF3A1-203ENST00000444440 TTC21BQ7Z4L5 1316 aa15.47■□□□□ 0.07
SF3A1-203ENST00000444440 GCP02774 474 aa15.47■□□□□ 0.07
SF3A1-203ENST00000444440 COL5A2P05997 1499 aaPredicted RBP15.46■□□□□ 0.07
SF3A1-203ENST00000444440 SBF2Q86WG5 1849 aa15.46■□□□□ 0.07
SF3A1-203ENST00000444440 NLRP13Q86W25 1043 aa15.46■□□□□ 0.07
SF3A1-203ENST00000444440 TESK2Q96S53 571 aa15.46■□□□□ 0.07
SF3A1-203ENST00000444440 STRN4Q9NRL3 753 aa15.46■□□□□ 0.07
SF3A1-203ENST00000444440 MYOM1P52179 1685 aa15.46■□□□□ 0.07
SF3A1-203ENST00000444440 SPATA31A1Q5TZJ5 1347 aa15.45■□□□□ 0.06
SF3A1-203ENST00000444440 NLRP6P59044 892 aa15.45■□□□□ 0.06
SF3A1-203ENST00000444440 KTN1Q86UP2 1357 aaKnown RBP15.45■□□□□ 0.06
SF3A1-203ENST00000444440 LRRC37A3O60309 1634 aa15.44■□□□□ 0.06
SF3A1-203ENST00000444440 FAM182BQ5T319 152 aa15.44■□□□□ 0.06
SF3A1-203ENST00000444440 KRT27Q7Z3Y8 459 aa15.44■□□□□ 0.06
SF3A1-203ENST00000444440 ZRANB1Q9UGI0 708 aa15.44■□□□□ 0.06
SF3A1-203ENST00000444440 BLMP54132 1417 aaPredicted RBP15.43■□□□□ 0.06
SF3A1-203ENST00000444440 SRCAPQ6ZRS2 3230 aa15.43■□□□□ 0.06
SF3A1-203ENST00000444440 ST20-MTHFSA0A0A6YYL1 179 aa15.43■□□□□ 0.06
SF3A1-203ENST00000444440 LARP1Q6PKG0 1096 aaKnown RBP15.43■□□□□ 0.06
SF3A1-203ENST00000444440 A0A1W2PP64 1363 aa15.42■□□□□ 0.06
SF3A1-203ENST00000444440 A0A0G2JS52 829 aa15.42■□□□□ 0.06
SF3A1-203ENST00000444440 MYT1Q01538 1121 aa15.42■□□□□ 0.06
SF3A1-203ENST00000444440 ZNF692Q9BU19 519 aaPredicted RBP15.42■□□□□ 0.06
SF3A1-203ENST00000444440 PCGF6Q9BYE7 350 aa15.42■□□□□ 0.06
SF3A1-203ENST00000444440 SLC12A5Q9H2X9 1139 aa15.42■□□□□ 0.06
SF3A1-203ENST00000444440 RGPD2P0DJD1 1756 aa15.41■□□□□ 0.06
SF3A1-203ENST00000444440 KIF20BQ96Q89 1820 aa15.41■□□□□ 0.06
SF3A1-203ENST00000444440 PEAK1Q9H792 1746 aa15.41■□□□□ 0.06
SF3A1-203ENST00000444440 ZBTB7CA1YPR0 619 aa15.41■□□□□ 0.06
SF3A1-203ENST00000444440 USP35Q9P2H5 1018 aa15.41■□□□□ 0.06
SF3A1-203ENST00000444440 TTC21AQ8NDW8 1320 aa15.41■□□□□ 0.06
SF3A1-203ENST00000444440 AATKQ6ZMQ8 1374 aa15.4■□□□□ 0.06
SF3A1-203ENST00000444440 USP47Q96K76 1375 aa15.4■□□□□ 0.06
SF3A1-203ENST00000444440 DEFB132Q7Z7B7 95 aa15.4■□□□□ 0.06
SF3A1-203ENST00000444440 AXIN2Q9Y2T1 843 aa15.4■□□□□ 0.06
SF3A1-203ENST00000444440 SOX12O15370 315 aa15.39■□□□□ 0.05
SF3A1-203ENST00000444440 NME9Q86XW9 330 aa15.39■□□□□ 0.05
SF3A1-203ENST00000444440 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.39■□□□□ 0.05
SF3A1-203ENST00000444440 TMC1Q8TDI8 760 aa15.39■□□□□ 0.05
SF3A1-203ENST00000444440 EDC4Q6P2E9 1401 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms