RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MYOM2P54296 1465 aa11.32□□□□□ -0.6
CD44-211ENST00000442151 ADAMTS2O95450 1211 aa11.32□□□□□ -0.6
CD44-211ENST00000442151 DDX17Q92841 729 aaKnown RBP11.32□□□□□ -0.6
CD44-211ENST00000442151 CREBZFQ9NS37 354 aa11.32□□□□□ -0.6
CD44-211ENST00000442151 TRPC5Q9UL62 973 aaPredicted RBP11.32□□□□□ -0.6
CD44-211ENST00000442151 EIF3AQ14152 1382 aaKnown RBP11.32□□□□□ -0.6
CD44-211ENST00000442151 CDC42BPGQ6DT37 1551 aa11.32□□□□□ -0.6
CD44-211ENST00000442151 ATMINO43313 823 aaPredicted RBP11.31□□□□□ -0.6
CD44-211ENST00000442151 FOXO3O43524 673 aa11.31□□□□□ -0.6
CD44-211ENST00000442151 CFAP70Q5T0N1 1121 aa11.31□□□□□ -0.6
CD44-211ENST00000442151 LAMC1P11047 1609 aa11.31□□□□□ -0.6
CD44-211ENST00000442151 DCAF11Q8TEB1 546 aa11.3□□□□□ -0.6
CD44-211ENST00000442151 USP21Q9UK80 565 aa11.3□□□□□ -0.6
CD44-211ENST00000442151 IFT172Q9UG01 1749 aa11.3□□□□□ -0.6
CD44-211ENST00000442151 KRT28Q7Z3Y7 464 aa11.3□□□□□ -0.6
CD44-211ENST00000442151 FNBP4Q8N3X1 1017 aaPredicted RBP11.3□□□□□ -0.6
CD44-211ENST00000442151 KNDC1Q76NI1 1749 aa11.29□□□□□ -0.6
CD44-211ENST00000442151 HAP1P54257 671 aaPredicted RBP11.29□□□□□ -0.6
CD44-211ENST00000442151 PHF8Q9UPP1 1060 aa11.29□□□□□ -0.6
CD44-211ENST00000442151 KDM2AQ9Y2K7 1162 aa11.29□□□□□ -0.6
CD44-211ENST00000442151 PRAM1Q96QH2 718 aa11.28□□□□□ -0.6
CD44-211ENST00000442151 NRXN1Q9ULB1 1477 aa11.28□□□□□ -0.6
CD44-211ENST00000442151 NUTM2FA1L443 756 aa11.28□□□□□ -0.6
CD44-211ENST00000442151 UPF1Q92900 1129 aaKnown RBP eCLIP11.27□□□□□ -0.61
CD44-211ENST00000442151 SPATA31A3Q5VYP0 1347 aa11.27□□□□□ -0.61
CD44-211ENST00000442151 DLC1Q96QB1 1528 aa11.26□□□□□ -0.61
CD44-211ENST00000442151 KIF1AQ12756 1690 aa11.26□□□□□ -0.61
CD44-211ENST00000442151 TRAK1Q9UPV9 953 aa11.25□□□□□ -0.61
CD44-211ENST00000442151 ANKARQ7Z5J8 1434 aa11.25□□□□□ -0.61
CD44-211ENST00000442151 SBNO1A3KN83 1393 aa11.25□□□□□ -0.61
CD44-211ENST00000442151 ARHGEF10O15013 1369 aa11.25□□□□□ -0.61
CD44-211ENST00000442151 GPRASP1Q5JY77 1395 aa11.25□□□□□ -0.61
CD44-211ENST00000442151 PLEKHH1Q9ULM0 1364 aa11.25□□□□□ -0.61
CD44-211ENST00000442151 CCDC125Q86Z20 511 aa11.24□□□□□ -0.61
CD44-211ENST00000442151 PXDNQ92626 1479 aa11.24□□□□□ -0.61
CD44-211ENST00000442151 COL22A1Q8NFW1 1626 aaPredicted RBP11.24□□□□□ -0.61
CD44-211ENST00000442151 SAFB2Q14151 953 aaKnown RBP eCLIP11.23□□□□□ -0.61
CD44-211ENST00000442151 ATAD2Q6PL18 1390 aa11.23□□□□□ -0.61
CD44-211ENST00000442151 XPCQ01831 940 aaPredicted RBP11.23□□□□□ -0.61
CD44-211ENST00000442151 LMOD2Q6P5Q4 547 aa11.23□□□□□ -0.61
CD44-211ENST00000442151 UNC5CLQ8IV45 518 aa11.23□□□□□ -0.61
CD44-211ENST00000442151 FMN2Q9NZ56 1722 aa11.23□□□□□ -0.61
CD44-211ENST00000442151 WASLO00401 505 aaPredicted RBP11.22□□□□□ -0.61
CD44-211ENST00000442151 MMRN1Q13201 1228 aa11.22□□□□□ -0.61
CD44-211ENST00000442151 NGDNQ8NEJ9 315 aaKnown RBP11.22□□□□□ -0.61
CD44-211ENST00000442151 ZBTB22O15209 634 aa11.21□□□□□ -0.61
CD44-211ENST00000442151 GJD4Q96KN9 370 aaPredicted RBP11.21□□□□□ -0.61
CD44-211ENST00000442151 ATRNO75882 1429 aa11.2□□□□□ -0.62
CD44-211ENST00000442151 TNS3Q68CZ2 1445 aa11.2□□□□□ -0.62
CD44-211ENST00000442151 MINK1Q8N4C8 1332 aaPredicted RBP11.2□□□□□ -0.62
CD44-211ENST00000442151 MS4A3Q96HJ5 214 aa11.2□□□□□ -0.62
CD44-211ENST00000442151 PMFBP1Q8TBY8 1022 aa11.19□□□□□ -0.62
CD44-211ENST00000442151 SF3B2Q13435 895 aaKnown RBP11.17□□□□□ -0.62
CD44-211ENST00000442151 VPS72Q15906 364 aa11.17□□□□□ -0.62
CD44-211ENST00000442151 NUDT16Q96DE0 195 aaKnown RBP11.17□□□□□ -0.62
CD44-211ENST00000442151 HIRIP3Q9BW71 556 aaPredicted RBP11.17□□□□□ -0.62
CD44-211ENST00000442151 CCDC9Q9Y3X0 531 aaKnown RBP11.17□□□□□ -0.62
CD44-211ENST00000442151 RGS12O14924 1447 aa11.17□□□□□ -0.62
CD44-211ENST00000442151 ADGRB2O60241 1585 aa11.17□□□□□ -0.62
CD44-211ENST00000442151 ADGRB1O14514 1584 aa11.16□□□□□ -0.62
CD44-211ENST00000442151 BCL9LQ86UU0 1499 aa11.16□□□□□ -0.62
CD44-211ENST00000442151 CDK19Q9BWU1 502 aa11.16□□□□□ -0.62
CD44-211ENST00000442151 CCDC61Q9Y6R9 512 aa11.16□□□□□ -0.62
CD44-211ENST00000442151 MARF1Q9Y4F3 1742 aaKnown RBP11.15□□□□□ -0.62
CD44-211ENST00000442151 TULP4Q9NRJ4 1543 aa11.15□□□□□ -0.62
CD44-211ENST00000442151 SPNS2Q8IVW8 549 aa11.15□□□□□ -0.62
CD44-211ENST00000442151 SLIT2O94813 1529 aa11.14□□□□□ -0.63
CD44-211ENST00000442151 CABLES1Q8TDN4 633 aa11.14□□□□□ -0.63
CD44-211ENST00000442151 BRD4O60885 1362 aaPredicted RBP11.14□□□□□ -0.63
CD44-211ENST00000442151 KIAA1210Q9ULL0 1709 aa11.13□□□□□ -0.63
CD44-211ENST00000442151 PLEKHG3A1L390 1219 aa11.13□□□□□ -0.63
CD44-211ENST00000442151 ONECUT3O60422 494 aaPredicted RBP11.13□□□□□ -0.63
CD44-211ENST00000442151 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.13□□□□□ -0.63
CD44-211ENST00000442151 FAM83GA6ND36 823 aa11.12□□□□□ -0.63
CD44-211ENST00000442151 SRPK2P78362 688 aaKnown RBP11.12□□□□□ -0.63
CD44-211ENST00000442151 RGPD8O14715 1765 aaPredicted RBP11.12□□□□□ -0.63
CD44-211ENST00000442151 CENPJQ9HC77 1338 aaPredicted RBP11.12□□□□□ -0.63
CD44-211ENST00000442151 USP32Q8NFA0 1604 aa11.12□□□□□ -0.63
CD44-211ENST00000442151 PLEKHG5O94827 1062 aa11.12□□□□□ -0.63
CD44-211ENST00000442151 NBPF8Q3BBV2 869 aa11.12□□□□□ -0.63
CD44-211ENST00000442151 SEPT12Q8IYM1 358 aa11.12□□□□□ -0.63
CD44-211ENST00000442151 PRDM11Q9NQV5 511 aa11.11□□□□□ -0.63
CD44-211ENST00000442151 BTG4Q9NY30 223 aa11.11□□□□□ -0.63
CD44-211ENST00000442151 PRR36Q9H6K5 1346 aa11.11□□□□□ -0.63
CD44-211ENST00000442151 RALGAPBQ86X10 1494 aa11.11□□□□□ -0.63
CD44-211ENST00000442151 ITSN1Q15811 1721 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 NWD2Q9ULI1 1742 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 A0A0G2JS52 829 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 ATN1P54259 1190 aaPredicted RBP11.1□□□□□ -0.63
CD44-211ENST00000442151 EVA1CP58658 441 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 MYT1Q01538 1121 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 KRT27Q7Z3Y8 459 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 NLRP13Q86W25 1043 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 ATP7BP35670 1465 aa11.1□□□□□ -0.63
CD44-211ENST00000442151 ACEP12821 1306 aa11.09□□□□□ -0.63
CD44-211ENST00000442151 EVC2Q86UK5 1308 aa11.09□□□□□ -0.63
CD44-211ENST00000442151 SLC24A1O60721 1099 aa11.09□□□□□ -0.63
CD44-211ENST00000442151 ABTB2Q8N961 1025 aa11.09□□□□□ -0.63
CD44-211ENST00000442151 L3MBTL2Q969R5 705 aa11.09□□□□□ -0.63
CD44-211ENST00000442151 BLMP54132 1417 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms