RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 TBC1D22AQ8WUA7 517 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 CXorf56Q9H5V9 222 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 CEP126Q9P2H0 1117 aa7.95□□□□□ -1.14
MCF2-205ENST00000437564 ANKRD33BA6NCL7 494 aa7.94□□□□□ -1.14
MCF2-205ENST00000437564 H0YHG0 523 aa7.94□□□□□ -1.14
MCF2-205ENST00000437564 PPP1R15AO75807 674 aaPredicted RBP7.94□□□□□ -1.14
MCF2-205ENST00000437564 GSCP56915 257 aaPredicted RBP7.94□□□□□ -1.14
MCF2-205ENST00000437564 SARNPP82979 210 aaKnown RBP7.94□□□□□ -1.14
MCF2-205ENST00000437564 BIRC2Q13490 618 aa7.94□□□□□ -1.14
MCF2-205ENST00000437564 NEUROD2Q15784 382 aa7.94□□□□□ -1.14
MCF2-205ENST00000437564 HDGFL1Q5TGJ6 251 aa7.94□□□□□ -1.14
MCF2-205ENST00000437564 GOLGA6L1Q8N7Z2 621 aa7.94□□□□□ -1.14
MCF2-205ENST00000437564 SLFN14P0C7P3 912 aa7.93□□□□□ -1.14
MCF2-205ENST00000437564 CDC37Q16543 378 aaPredicted RBP7.93□□□□□ -1.14
MCF2-205ENST00000437564 SNRNP27Q8WVK2 155 aaKnown RBP7.93□□□□□ -1.14
MCF2-205ENST00000437564 MTA3Q9BTC8 594 aa7.93□□□□□ -1.14
MCF2-205ENST00000437564 TEX13AQ9BXU3 409 aaPredicted RBP7.93□□□□□ -1.14
MCF2-205ENST00000437564 KDM4CQ9H3R0 1056 aa7.93□□□□□ -1.14
MCF2-205ENST00000437564 NOL7Q9UMY1 257 aaKnown RBP7.93□□□□□ -1.14
MCF2-205ENST00000437564 RPS6KL1Q9Y6S9 549 aa7.93□□□□□ -1.14
MCF2-205ENST00000437564 PRDM2Q13029 1718 aa7.93□□□□□ -1.14
MCF2-205ENST00000437564 ZRANB2O95218 330 aaKnown RBP eCLIP7.93□□□□□ -1.14
MCF2-205ENST00000437564 CT47B1P0C2W7 299 aaPredicted RBP7.93□□□□□ -1.14
MCF2-205ENST00000437564 SETSIPP0DME0 302 aa7.92□□□□□ -1.14
MCF2-205ENST00000437564 NOL10Q9BSC4 688 aaKnown RBP7.92□□□□□ -1.14
MCF2-205ENST00000437564 SLC24A3Q9HC58 644 aa7.92□□□□□ -1.14
MCF2-205ENST00000437564 RAD54L2Q9Y4B4 1467 aa7.92□□□□□ -1.14
MCF2-205ENST00000437564 EIF3JO75822 258 aaKnown RBP7.91□□□□□ -1.14
MCF2-205ENST00000437564 PAX7P23759 505 aa7.91□□□□□ -1.14
MCF2-205ENST00000437564 SSFA2P28290 1259 aa7.91□□□□□ -1.14
MCF2-205ENST00000437564 ZNF280DQ6N043 979 aa7.91□□□□□ -1.14
MCF2-205ENST00000437564 CXorf38Q8TB03 319 aa7.91□□□□□ -1.14
MCF2-205ENST00000437564 DDX49Q9Y6V7 483 aaKnown RBP7.91□□□□□ -1.14
MCF2-205ENST00000437564 FOXD4L5Q5VV16 416 aaPredicted RBP7.91□□□□□ -1.14
MCF2-205ENST00000437564 NOL8Q76FK4 1167 aaKnown RBP7.91□□□□□ -1.14
MCF2-205ENST00000437564 KLHL23Q8NBE8 558 aa7.91□□□□□ -1.14
MCF2-205ENST00000437564 FOXD4L4Q8WXT5 416 aaPredicted RBP7.91□□□□□ -1.14
MCF2-205ENST00000437564 LARP6Q9BRS8 491 aaKnown RBP7.91□□□□□ -1.14
MCF2-205ENST00000437564 TACO1Q9BSH4 297 aaKnown RBP7.91□□□□□ -1.14
MCF2-205ENST00000437564 DEF6Q9H4E7 631 aa7.91□□□□□ -1.14
MCF2-205ENST00000437564 CASQ1P31415 396 aa7.9□□□□□ -1.14
MCF2-205ENST00000437564 ATP6V1AP38606 617 aa7.9□□□□□ -1.14
MCF2-205ENST00000437564 TERF2Q15554 542 aa7.9□□□□□ -1.14
MCF2-205ENST00000437564 JAKMIP3Q5VZ66 844 aa7.9□□□□□ -1.14
MCF2-205ENST00000437564 FAM184AQ8NB25 1140 aa7.9□□□□□ -1.14
MCF2-205ENST00000437564 HELBQ8NG08 1087 aaPredicted RBP7.9□□□□□ -1.14
MCF2-205ENST00000437564 IBTKQ9P2D0 1353 aaPredicted RBP7.9□□□□□ -1.15
MCF2-205ENST00000437564 ANKRD18BA2A2Z9 1011 aa7.9□□□□□ -1.15
MCF2-205ENST00000437564 CCP110O43303 1012 aa7.9□□□□□ -1.15
MCF2-205ENST00000437564 PROCA1Q8NCQ7 364 aaPredicted RBP7.9□□□□□ -1.15
MCF2-205ENST00000437564 RANBP17Q9H2T7 1088 aaKnown RBP7.9□□□□□ -1.15
MCF2-205ENST00000437564 FRMD4BQ9Y2L6 1034 aa7.9□□□□□ -1.15
MCF2-205ENST00000437564 SMG6Q86US8 1419 aaKnown RBP7.89□□□□□ -1.15
MCF2-205ENST00000437564 BRD1O95696 1058 aa7.89□□□□□ -1.15
MCF2-205ENST00000437564 ABCD1P33897 745 aa7.89□□□□□ -1.15
MCF2-205ENST00000437564 ZSCAN26Q16670 478 aa7.89□□□□□ -1.15
MCF2-205ENST00000437564 RBM26Q5T8P6 1007 aaKnown RBP7.89□□□□□ -1.15
MCF2-205ENST00000437564 SYNPO2Q9UMS6 1093 aa7.89□□□□□ -1.15
MCF2-205ENST00000437564 IRX1P78414 480 aaPredicted RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 CHAF1AQ13111 956 aaPredicted RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 DNAJC21Q5F1R6 531 aaKnown RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 ZNF710Q8N1W2 664 aa7.88□□□□□ -1.15
MCF2-205ENST00000437564 PNISRQ8TF01 805 aaKnown RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 JRKLQ9Y4A0 524 aa7.88□□□□□ -1.15
MCF2-205ENST00000437564 HMGB1P1B2RPK0 211 aaPredicted RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 SEMA3EO15041 775 aa7.88□□□□□ -1.15
MCF2-205ENST00000437564 CCT2P78371 535 aaKnown RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 SF3A1Q15459 793 aaKnown RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 HSP90B2PQ58FF3 399 aa7.88□□□□□ -1.15
MCF2-205ENST00000437564 KRBA2Q6ZNG9 492 aa7.88□□□□□ -1.15
MCF2-205ENST00000437564 ZCRB1Q8TBF4 217 aaKnown RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 TNPO1Q92973 898 aaKnown RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 CWC15Q9P013 229 aaKnown RBP7.88□□□□□ -1.15
MCF2-205ENST00000437564 TESPA1A2RU30 521 aaPredicted RBP7.87□□□□□ -1.15
MCF2-205ENST00000437564 ATP2B1P20020 1258 aa7.87□□□□□ -1.15
MCF2-205ENST00000437564 MAGEA8P43361 318 aa7.87□□□□□ -1.15
MCF2-205ENST00000437564 DDX10Q13206 875 aaKnown RBP7.87□□□□□ -1.15
MCF2-205ENST00000437564 MAP9Q49MG5 647 aa7.87□□□□□ -1.15
MCF2-205ENST00000437564 ATL2Q8NHH9 583 aa7.87□□□□□ -1.15
MCF2-205ENST00000437564 PIK3R5Q8WYR1 880 aa7.87□□□□□ -1.15
MCF2-205ENST00000437564 SCAPERQ9BY12 1400 aa7.87□□□□□ -1.15
MCF2-205ENST00000437564 SMARCA2P51531 1590 aa7.87□□□□□ -1.15
MCF2-205ENST00000437564 SYNRGQ9UMZ2 1314 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 HSP90AB1P08238 724 aaKnown RBP7.86□□□□□ -1.15
MCF2-205ENST00000437564 RAD51AP2Q09MP3 1159 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 MUM1L1Q5H9M0 696 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 GORABQ5T7V8 394 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 CCDC181Q5TID7 509 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 APBB1IPQ7Z5R6 666 aaPredicted RBP7.86□□□□□ -1.15
MCF2-205ENST00000437564 ZNF579Q8NAF0 562 aaKnown RBP7.86□□□□□ -1.15
MCF2-205ENST00000437564 SCRIBQ14160 1630 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 DDX11L8A8MPP1 907 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 TPD52L2O43399 206 aaKnown RBP7.86□□□□□ -1.15
MCF2-205ENST00000437564 REC8O95072 547 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 MCM4P33991 863 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 SYCP1Q15431 976 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 NOM1Q5C9Z4 860 aaKnown RBP7.86□□□□□ -1.15
MCF2-205ENST00000437564 SUGP1Q8IWZ8 645 aaKnown RBP7.86□□□□□ -1.15
MCF2-205ENST00000437564 PHF8Q9UPP1 1060 aa7.86□□□□□ -1.15
MCF2-205ENST00000437564 FARP1Q9Y4F1 1045 aaPredicted RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms