RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 DZIP1LQ8IYY4 767 aaKnown RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 ZHX3Q9H4I2 956 aa13.33□□□□□ -0.28
SCN4A-201ENST00000435607 NUTM2BA6NNL0 878 aaPredicted RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 NUTM2EB1AL46 878 aaPredicted RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 KINO60870 393 aaKnown RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 NUTM2AQ8IVF1 878 aaPredicted RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 CWC15Q9P013 229 aaKnown RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 ZNF396Q96N95 335 aaPredicted RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 RBM19Q9Y4C8 960 aaKnown RBP13.33□□□□□ -0.28
SCN4A-201ENST00000435607 GOLGA6L7A0A1B0GV03 622 aa13.33□□□□□ -0.28
SCN4A-201ENST00000435607 ZNF76P36508 570 aa13.33□□□□□ -0.28
SCN4A-201ENST00000435607 NLRP6P59044 892 aa13.33□□□□□ -0.28
SCN4A-201ENST00000435607 GRIPAP1Q4V328 841 aa13.33□□□□□ -0.28
SCN4A-201ENST00000435607 MPHOSPH8Q99549 860 aa13.33□□□□□ -0.28
SCN4A-201ENST00000435607 ABTB2Q8N961 1025 aa13.33□□□□□ -0.28
SCN4A-201ENST00000435607 TDRD9Q8NDG6 1382 aaKnown RBP13.32□□□□□ -0.28
SCN4A-201ENST00000435607 ENOX2Q16206 610 aaKnown RBP13.32□□□□□ -0.28
SCN4A-201ENST00000435607 LETM1O95202 739 aaPredicted RBP13.32□□□□□ -0.28
SCN4A-201ENST00000435607 DACH1Q9UI36 760 aa13.32□□□□□ -0.28
SCN4A-201ENST00000435607 CETN2P41208 172 aa13.31□□□□□ -0.28
SCN4A-201ENST00000435607 DRC1Q96MC2 740 aa13.31□□□□□ -0.28
SCN4A-201ENST00000435607 DEF6Q9H4E7 631 aa13.31□□□□□ -0.28
SCN4A-201ENST00000435607 GNAI3P08754 354 aa13.31□□□□□ -0.28
SCN4A-201ENST00000435607 ESCO1Q5FWF5 840 aa13.31□□□□□ -0.28
SCN4A-201ENST00000435607 CCDC57Q2TAC2 916 aa13.31□□□□□ -0.28
SCN4A-201ENST00000435607 ZNF287Q9HBT7 754 aa13.31□□□□□ -0.28
SCN4A-201ENST00000435607 TTLL5Q6EMB2 1281 aa13.3□□□□□ -0.28
SCN4A-201ENST00000435607 STAC3Q96MF2 364 aa13.3□□□□□ -0.28
SCN4A-201ENST00000435607 SCLT1Q96NL6 688 aa13.3□□□□□ -0.28
SCN4A-201ENST00000435607 PTPRGP23470 1445 aa13.3□□□□□ -0.28
SCN4A-201ENST00000435607 CABP4P57796 275 aa13.3□□□□□ -0.28
SCN4A-201ENST00000435607 CCDC181Q5TID7 509 aa13.3□□□□□ -0.28
SCN4A-201ENST00000435607 NOL7Q9UMY1 257 aaKnown RBP13.3□□□□□ -0.28
SCN4A-201ENST00000435607 IBSPP21815 317 aaPredicted RBP13.29□□□□□ -0.28
SCN4A-201ENST00000435607 RUNDC1Q96C34 613 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 L3MBTL2Q969R5 705 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 VPS8Q8N3P4 1428 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 CCDC69A6NI79 296 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 AAMPQ13685 434 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 ATP2B1P20020 1258 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 TOM1L2Q6ZVM7 507 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 CCDC112Q8NEF3 446 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 TANGO6Q9C0B7 1094 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 ANAPC15P60006 121 aa13.29□□□□□ -0.28
SCN4A-201ENST00000435607 DNAJC2Q99543 621 aaKnown RBP13.29□□□□□ -0.28
SCN4A-201ENST00000435607 RAB3GAP2Q9H2M9 1393 aa13.28□□□□□ -0.28
SCN4A-201ENST00000435607 TTLL12Q14166 644 aaPredicted RBP13.28□□□□□ -0.28
SCN4A-201ENST00000435607 SKIDA1Q1XH10 827 aa13.28□□□□□ -0.28
SCN4A-201ENST00000435607 SMC2O95347 1197 aa13.28□□□□□ -0.28
SCN4A-201ENST00000435607 SPG7Q9UQ90 795 aa13.28□□□□□ -0.28
SCN4A-201ENST00000435607 PPP1R12BO60237 982 aaPredicted RBP13.28□□□□□ -0.28
SCN4A-201ENST00000435607 BRPF1P55201 1214 aaPredicted RBP13.27□□□□□ -0.28
SCN4A-201ENST00000435607 HMGN5P82970 282 aaKnown RBP13.27□□□□□ -0.28
SCN4A-201ENST00000435607 ST20-MTHFSA0A0A6YYL1 179 aa13.27□□□□□ -0.29
SCN4A-201ENST00000435607 COG6Q9Y2V7 657 aa13.27□□□□□ -0.29
SCN4A-201ENST00000435607 FEZ1Q99689 392 aa13.27□□□□□ -0.29
SCN4A-201ENST00000435607 CT47B1P0C2W7 299 aaPredicted RBP13.26□□□□□ -0.29
SCN4A-201ENST00000435607 CCDC91Q7Z6B0 441 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 CCDC150Q8NCX0 1101 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 TSPYL1Q9H0U9 437 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 ZNF652Q9Y2D9 606 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 PNISRQ8TF01 805 aaKnown RBP13.26□□□□□ -0.29
SCN4A-201ENST00000435607 NUTM2GQ5VZR2 741 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 STAMBPO95630 424 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 MCM2P49736 904 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 PIP4K2BP78356 416 aa13.26□□□□□ -0.29
SCN4A-201ENST00000435607 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.26□□□□□ -0.29
SCN4A-201ENST00000435607 EPB41L2O43491 1005 aaKnown RBP13.25□□□□□ -0.29
SCN4A-201ENST00000435607 PPFIBP1Q86W92 1011 aa13.25□□□□□ -0.29
SCN4A-201ENST00000435607 RSPH6AQ9H0K4 717 aa13.25□□□□□ -0.29
SCN4A-201ENST00000435607 CDKL5O76039 1030 aa13.25□□□□□ -0.29
SCN4A-201ENST00000435607 AXDND1Q5T1B0 1012 aaPredicted RBP13.25□□□□□ -0.29
SCN4A-201ENST00000435607 IQCEQ6IPM2 695 aa13.25□□□□□ -0.29
SCN4A-201ENST00000435607 STK38Q15208 465 aa13.25□□□□□ -0.29
SCN4A-201ENST00000435607 ANKRD1Q15327 319 aa13.25□□□□□ -0.29
SCN4A-201ENST00000435607 JAKMIP3Q5VZ66 844 aa13.25□□□□□ -0.29
SCN4A-201ENST00000435607 SEPT11Q9NVA2 429 aaKnown RBP13.25□□□□□ -0.29
SCN4A-201ENST00000435607 THEMISQ8N1K5 641 aaPredicted RBP13.25□□□□□ -0.29
SCN4A-201ENST00000435607 INCENPQ9NQS7 918 aa13.24□□□□□ -0.29
SCN4A-201ENST00000435607 HOMER2Q9NSB8 354 aa13.24□□□□□ -0.29
SCN4A-201ENST00000435607 PABPN1LA6NDY0 278 aaKnown RBP13.24□□□□□ -0.29
SCN4A-201ENST00000435607 KDM4AO75164 1064 aa13.24□□□□□ -0.29
SCN4A-201ENST00000435607 HMOX1P09601 288 aa13.24□□□□□ -0.29
SCN4A-201ENST00000435607 FAM13BQ9NYF5 915 aa13.24□□□□□ -0.29
SCN4A-201ENST00000435607 SURF6O75683 361 aaKnown RBP13.24□□□□□ -0.29
SCN4A-201ENST00000435607 PRDM2Q13029 1718 aa13.23□□□□□ -0.29
SCN4A-201ENST00000435607 DDX54Q8TDD1 881 aaKnown RBP13.23□□□□□ -0.29
SCN4A-201ENST00000435607 APAF1O14727 1248 aa13.23□□□□□ -0.29
SCN4A-201ENST00000435607 MPHOSPH6Q99547 160 aaKnown RBP13.23□□□□□ -0.29
SCN4A-201ENST00000435607 CDC45O75419 566 aa13.23□□□□□ -0.29
SCN4A-201ENST00000435607 MYCNP04198 464 aaPredicted RBP13.23□□□□□ -0.29
SCN4A-201ENST00000435607 IGHMBP2P38935 993 aaKnown RBP13.23□□□□□ -0.29
SCN4A-201ENST00000435607 SSR1P43307 286 aaKnown RBP13.23□□□□□ -0.29
SCN4A-201ENST00000435607 EHMT1Q9H9B1 1298 aa13.22□□□□□ -0.29
SCN4A-201ENST00000435607 SSBP05455 408 aaKnown RBP eCLIP13.22□□□□□ -0.29
SCN4A-201ENST00000435607 ZNF710Q8N1W2 664 aa13.22□□□□□ -0.29
SCN4A-201ENST00000435607 UBAC1Q9BSL1 405 aa13.22□□□□□ -0.29
SCN4A-201ENST00000435607 TXNDC2Q86VQ3 553 aa13.22□□□□□ -0.29
SCN4A-201ENST00000435607 TRIM5Q9C035 493 aa13.22□□□□□ -0.29
SCN4A-201ENST00000435607 CHMP4BP1P59074 171 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms