RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 FKBPLQ9UIM3 349 aa8.33□□□□□ -1.08
USP40-204ENST00000427947 WWC1Q8IX03 1113 aa8.32□□□□□ -1.08
USP40-204ENST00000427947 ANKLE1Q8NAG6 615 aa8.32□□□□□ -1.08
USP40-204ENST00000427947 FNBP4Q8N3X1 1017 aaPredicted RBP8.31□□□□□ -1.08
USP40-204ENST00000427947 TRAK2O60296 914 aa8.3□□□□□ -1.08
USP40-204ENST00000427947 IRF5Q13568 498 aa8.3□□□□□ -1.08
USP40-204ENST00000427947 PLA2G2CQ5R387 149 aa8.3□□□□□ -1.08
USP40-204ENST00000427947 IFFO2Q5TF58 517 aa8.3□□□□□ -1.08
USP40-204ENST00000427947 ARMC2Q8NEN0 867 aa8.3□□□□□ -1.08
USP40-204ENST00000427947 SUPT5HO00267 1087 aaKnown RBP8.29□□□□□ -1.08
USP40-204ENST00000427947 ZBTB24O43167 697 aaPredicted RBP8.29□□□□□ -1.08
USP40-204ENST00000427947 NBPF14Q5TI25 921 aa8.29□□□□□ -1.08
USP40-204ENST00000427947 ZNF330Q9Y3S2 320 aaPredicted RBP8.29□□□□□ -1.08
USP40-204ENST00000427947 ZC3H4Q9UPT8 1303 aaKnown RBP8.29□□□□□ -1.08
USP40-204ENST00000427947 LINC01559Q495D7 138 aa8.28□□□□□ -1.08
USP40-204ENST00000427947 PLSCR2Q9NRY7 297 aa8.28□□□□□ -1.08
USP40-204ENST00000427947 VAC14Q08AM6 782 aa8.27□□□□□ -1.09
USP40-204ENST00000427947 WASHC4Q2M389 1173 aa8.27□□□□□ -1.09
USP40-204ENST00000427947 BAP1Q92560 729 aa8.27□□□□□ -1.09
USP40-204ENST00000427947 GPKOWQ92917 476 aaPredicted RBP eCLIP8.27□□□□□ -1.09
USP40-204ENST00000427947 A0A0G2JS52 829 aa8.26□□□□□ -1.09
USP40-204ENST00000427947 ARID3CA6NKF2 412 aa8.26□□□□□ -1.09
USP40-204ENST00000427947 FBXO45P0C2W1 286 aa8.25□□□□□ -1.09
USP40-204ENST00000427947 TRIM32Q13049 653 aa8.25□□□□□ -1.09
USP40-204ENST00000427947 PDXDC2PQ6P474 469 aa8.25□□□□□ -1.09
USP40-204ENST00000427947 ZNF511Q8NB15 262 aa8.25□□□□□ -1.09
USP40-204ENST00000427947 ZNF777Q9ULD5 760 aaPredicted RBP8.25□□□□□ -1.09
USP40-204ENST00000427947 POM121CA8CG34 1229 aa8.24□□□□□ -1.09
USP40-204ENST00000427947 ZBBXA8MT70 800 aa8.24□□□□□ -1.09
USP40-204ENST00000427947 PTK2Q05397 1052 aa8.24□□□□□ -1.09
USP40-204ENST00000427947 AGERQ15109 404 aa8.24□□□□□ -1.09
USP40-204ENST00000427947 NR1H3Q13133 447 aa8.23□□□□□ -1.09
USP40-204ENST00000427947 ARHGAP9Q9BRR9 750 aa8.23□□□□□ -1.09
USP40-204ENST00000427947 CARD14Q9BXL6 1004 aa8.23□□□□□ -1.09
USP40-204ENST00000427947 MAGEB6P1A0A0J9YX57 407 aa8.22□□□□□ -1.09
USP40-204ENST00000427947 RPIAP49247 311 aa8.22□□□□□ -1.09
USP40-204ENST00000427947 SH3BP2P78314 561 aa8.22□□□□□ -1.09
USP40-204ENST00000427947 LIAT1Q6ZQX7 453 aa8.22□□□□□ -1.09
USP40-204ENST00000427947 SH3BP5LQ7L8J4 393 aa8.22□□□□□ -1.09
USP40-204ENST00000427947 BPHLQ86WA6 291 aaPredicted RBP8.22□□□□□ -1.09
USP40-204ENST00000427947 FOXJ1Q92949 421 aa8.22□□□□□ -1.09
USP40-204ENST00000427947 GPSM3Q9Y4H4 160 aa8.22□□□□□ -1.09
USP40-204ENST00000427947 CD2BP2O95400 341 aaKnown RBP8.21□□□□□ -1.1
USP40-204ENST00000427947 SLC19A1P41440 591 aa8.21□□□□□ -1.1
USP40-204ENST00000427947 ZBTB33Q86T24 672 aa8.21□□□□□ -1.1
USP40-204ENST00000427947 EMID1Q96A84 441 aaPredicted RBP8.21□□□□□ -1.1
USP40-204ENST00000427947 OCSTAMPQ9BR26 566 aa8.21□□□□□ -1.1
USP40-204ENST00000427947 EIF4G2P78344 907 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP40-204ENST00000427947 SKOR1P84550 965 aa8.2□□□□□ -1.1
USP40-204ENST00000427947 SH3RF1Q7Z6J0 888 aa8.2□□□□□ -1.1
USP40-204ENST00000427947 ADAM32Q8TC27 787 aa8.2□□□□□ -1.1
USP40-204ENST00000427947 GLMNQ92990 594 aa8.2□□□□□ -1.1
USP40-204ENST00000427947 C1orf115Q9H7X2 142 aa8.2□□□□□ -1.1
USP40-204ENST00000427947 WNT7BP56706 349 aa8.19□□□□□ -1.1
USP40-204ENST00000427947 C4orf48Q5BLP8 95 aa8.19□□□□□ -1.1
USP40-204ENST00000427947 CALR3Q96L12 384 aaKnown RBP8.19□□□□□ -1.1
USP40-204ENST00000427947 SEMA3FQ13275 785 aa8.18□□□□□ -1.1
USP40-204ENST00000427947 PCDHB9Q9Y5E1 797 aa8.18□□□□□ -1.1
USP40-204ENST00000427947 SOX11P35716 441 aa8.17□□□□□ -1.1
USP40-204ENST00000427947 HDGFL1Q5TGJ6 251 aa8.17□□□□□ -1.1
USP40-204ENST00000427947 EHBP1Q8NDI1 1231 aa8.17□□□□□ -1.1
USP40-204ENST00000427947 ADAMTS19Q8TE59 1207 aa8.17□□□□□ -1.1
USP40-204ENST00000427947 PRKD2Q9BZL6 878 aa8.17□□□□□ -1.1
USP40-204ENST00000427947 ERFEQ4G0M1 354 aa8.16□□□□□ -1.1
USP40-204ENST00000427947 RC3H1Q5TC82 1133 aaKnown RBP8.16□□□□□ -1.1
USP40-204ENST00000427947 SPRYD7Q5W111 196 aa8.16□□□□□ -1.1
USP40-204ENST00000427947 SLC10A4Q96EP9 437 aa8.16□□□□□ -1.1
USP40-204ENST00000427947 VARSP26640 1264 aaKnown RBP8.15□□□□□ -1.1
USP40-204ENST00000427947 ZNF697Q5TEC3 545 aa8.15□□□□□ -1.1
USP40-204ENST00000427947 DZIP3Q86Y13 1208 aaKnown RBP8.15□□□□□ -1.1
USP40-204ENST00000427947 CCDC82Q8N4S0 544 aa8.15□□□□□ -1.1
USP40-204ENST00000427947 ALG2Q9H553 416 aa8.15□□□□□ -1.1
USP40-204ENST00000427947 ZNF592Q92610 1267 aa8.14□□□□□ -1.11
USP40-204ENST00000427947 CCDC97Q96F63 343 aaPredicted RBP8.14□□□□□ -1.11
USP40-204ENST00000427947 ARID3AQ99856 593 aa8.14□□□□□ -1.11
USP40-204ENST00000427947 C1QTNF2Q9BXJ5 285 aa8.14□□□□□ -1.11
USP40-204ENST00000427947 V9GY48 417 aaPredicted RBP8.14□□□□□ -1.11
USP40-204ENST00000427947 ZNF598Q86UK7 904 aaKnown RBP8.13□□□□□ -1.11
USP40-204ENST00000427947 FAM174AQ8TBP5 190 aa8.13□□□□□ -1.11
USP40-204ENST00000427947 MCCD1P59942 119 aaPredicted RBP8.12□□□□□ -1.11
USP40-204ENST00000427947 WNT7AO00755 349 aa8.11□□□□□ -1.11
USP40-204ENST00000427947 FOXC1Q12948 553 aa8.11□□□□□ -1.11
USP40-204ENST00000427947 ARID5BQ14865 1188 aa8.11□□□□□ -1.11
USP40-204ENST00000427947 TRMT44Q8IYL2 757 aaKnown RBP8.11□□□□□ -1.11
USP40-204ENST00000427947 MRGPRX2Q96LB1 330 aa8.11□□□□□ -1.11
USP40-204ENST00000427947 TLL2Q9Y6L7 1015 aa8.11□□□□□ -1.11
USP40-204ENST00000427947 NBPF20Q3BBV1 942 aa8.1□□□□□ -1.11
USP40-204ENST00000427947 VASH1Q7L8A9 365 aaPredicted RBP8.1□□□□□ -1.11
USP40-204ENST00000427947 CEP126Q9P2H0 1117 aa8.1□□□□□ -1.11
USP40-204ENST00000427947 SERPINA10Q9UK55 444 aa8.1□□□□□ -1.11
USP40-204ENST00000427947 CDV3Q9UKY7 258 aaKnown RBP8.1□□□□□ -1.11
USP40-204ENST00000427947 SLFNL1Q499Z3 407 aa8.09□□□□□ -1.11
USP40-204ENST00000427947 UCN2Q96RP3 112 aa8.09□□□□□ -1.11
USP40-204ENST00000427947 PIK3CDO00329 1044 aa8.08□□□□□ -1.12
USP40-204ENST00000427947 SIAH2O43255 324 aa8.08□□□□□ -1.12
USP40-204ENST00000427947 GIGYF1O75420 1035 aaPredicted RBP8.08□□□□□ -1.12
USP40-204ENST00000427947 PKD2L1Q9P0L9 805 aa8.08□□□□□ -1.12
USP40-204ENST00000427947 TNFRSF10AO00220 468 aa8.07□□□□□ -1.12
USP40-204ENST00000427947 RAB15P59190 212 aa8.07□□□□□ -1.12
USP40-204ENST00000427947 RNF135Q8IUD6 432 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms