RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 KIF6Q6ZMV9 814 aa13.25□□□□□ -0.29
TCOF1-204ENST00000427724 LTKP29376 864 aa13.24□□□□□ -0.29
TCOF1-204ENST00000427724 DDB1Q16531 1140 aa13.24□□□□□ -0.29
TCOF1-204ENST00000427724 TPRNQ4KMQ1 711 aa13.24□□□□□ -0.29
TCOF1-204ENST00000427724 ZNF335Q9H4Z2 1342 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-204ENST00000427724 ZNF219Q9P2Y4 722 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-204ENST00000427724 FAM161AQ3B820 660 aa13.23□□□□□ -0.29
TCOF1-204ENST00000427724 CFAP43Q8NDM7 1665 aa13.23□□□□□ -0.29
TCOF1-204ENST00000427724 HMMRO75330 724 aa13.23□□□□□ -0.29
TCOF1-204ENST00000427724 MYL6BP14649 208 aa13.23□□□□□ -0.29
TCOF1-204ENST00000427724 BTG4Q9NY30 223 aa13.23□□□□□ -0.29
TCOF1-204ENST00000427724 RAD21O60216 631 aa13.22□□□□□ -0.29
TCOF1-204ENST00000427724 TARBP1Q13395 1621 aaKnown RBP13.22□□□□□ -0.29
TCOF1-204ENST00000427724 SKAP1Q86WV1 359 aa13.22□□□□□ -0.29
TCOF1-204ENST00000427724 NBPF14Q5TI25 921 aa13.22□□□□□ -0.29
TCOF1-204ENST00000427724 PHF14O94880 888 aa13.22□□□□□ -0.29
TCOF1-204ENST00000427724 L1TD1Q5T7N2 865 aaKnown RBP13.22□□□□□ -0.29
TCOF1-204ENST00000427724 RUNDC1Q96C34 613 aa13.22□□□□□ -0.29
TCOF1-204ENST00000427724 COG6Q9Y2V7 657 aa13.22□□□□□ -0.29
TCOF1-204ENST00000427724 PBRM1Q86U86 1689 aa13.21□□□□□ -0.29
TCOF1-204ENST00000427724 ZPR1O75312 459 aa13.21□□□□□ -0.29
TCOF1-204ENST00000427724 GNAI1P63096 354 aa13.21□□□□□ -0.29
TCOF1-204ENST00000427724 USP21Q9UK80 565 aa13.21□□□□□ -0.29
TCOF1-204ENST00000427724 NEO1Q92859 1461 aa13.21□□□□□ -0.3
TCOF1-204ENST00000427724 FBLN1P23142 703 aa13.21□□□□□ -0.3
TCOF1-204ENST00000427724 HSP90AA2PQ14568 343 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-204ENST00000427724 EMILIN1Q9Y6C2 1016 aa13.2□□□□□ -0.3
TCOF1-204ENST00000427724 HMGB2P26583 209 aaKnown RBP13.2□□□□□ -0.3
TCOF1-204ENST00000427724 NCBP3Q53F19 620 aaKnown RBP13.2□□□□□ -0.3
TCOF1-204ENST00000427724 ANKRD24Q8TF21 1146 aa13.2□□□□□ -0.3
TCOF1-204ENST00000427724 AK7Q96M32 723 aa13.2□□□□□ -0.3
TCOF1-204ENST00000427724 NFKBIBQ15653 356 aa13.19□□□□□ -0.3
TCOF1-204ENST00000427724 TRIM34Q9BYJ4 488 aa13.19□□□□□ -0.3
TCOF1-204ENST00000427724 SAMD1Q6SPF0 538 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-204ENST00000427724 NOL10Q9BSC4 688 aaKnown RBP13.19□□□□□ -0.3
TCOF1-204ENST00000427724 TRIM6-TRIM34B2RNG4 842 aa13.19□□□□□ -0.3
TCOF1-204ENST00000427724 STARD3NLO95772 234 aa13.19□□□□□ -0.3
TCOF1-204ENST00000427724 TCP11L2Q8N4U5 519 aa13.19□□□□□ -0.3
TCOF1-204ENST00000427724 PKNOX2Q96KN3 472 aa13.19□□□□□ -0.3
TCOF1-204ENST00000427724 FAM98CQ17RN3 349 aaKnown RBP13.18□□□□□ -0.3
TCOF1-204ENST00000427724 HDGFL1Q5TGJ6 251 aa13.18□□□□□ -0.3
TCOF1-204ENST00000427724 KIAA1211Q6ZU35 1233 aa13.18□□□□□ -0.3
TCOF1-204ENST00000427724 ARID3AQ99856 593 aa13.18□□□□□ -0.3
TCOF1-204ENST00000427724 BACH2Q9BYV9 841 aa13.18□□□□□ -0.3
TCOF1-204ENST00000427724 ABCA5Q8WWZ7 1642 aa13.18□□□□□ -0.3
TCOF1-204ENST00000427724 RWDD1Q9H446 243 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-204ENST00000427724 CHD1O14646 1710 aa13.17□□□□□ -0.3
TCOF1-204ENST00000427724 BTBD11A6QL63 1104 aa13.17□□□□□ -0.3
TCOF1-204ENST00000427724 E9PSI1 815 aa13.17□□□□□ -0.3
TCOF1-204ENST00000427724 PPP2R1AP30153 589 aa13.17□□□□□ -0.3
TCOF1-204ENST00000427724 GPATCH3Q96I76 525 aa13.17□□□□□ -0.3
TCOF1-204ENST00000427724 ERCC6L2Q5T890 1561 aa13.17□□□□□ -0.3
TCOF1-204ENST00000427724 NCLP19338 710 aaKnown RBP13.16□□□□□ -0.3
TCOF1-204ENST00000427724 ZFYVE16Q7Z3T8 1539 aa13.15□□□□□ -0.3
TCOF1-204ENST00000427724 NEUROD6Q96NK8 337 aa13.15□□□□□ -0.3
TCOF1-204ENST00000427724 GCP02774 474 aa13.15□□□□□ -0.3
TCOF1-204ENST00000427724 TFCP2L1Q9NZI6 479 aa13.15□□□□□ -0.3
TCOF1-204ENST00000427724 TMEM94Q12767 1356 aa13.15□□□□□ -0.3
TCOF1-204ENST00000427724 MFAP1P55081 439 aaKnown RBP13.15□□□□□ -0.3
TCOF1-204ENST00000427724 CCDC85AQ96PX6 553 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-204ENST00000427724 HSP90B1P14625 803 aaKnown RBP13.14□□□□□ -0.31
TCOF1-204ENST00000427724 MIS18AQ9NYP9 233 aa13.14□□□□□ -0.31
TCOF1-204ENST00000427724 DUOX2Q9NRD8 1548 aa13.14□□□□□ -0.31
TCOF1-204ENST00000427724 PAXIP1Q6ZW49 1069 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-204ENST00000427724 QTRT2Q9H974 415 aaKnown RBP13.14□□□□□ -0.31
TCOF1-204ENST00000427724 CWC22Q9HCG8 908 aaKnown RBP13.14□□□□□ -0.31
TCOF1-204ENST00000427724 PANK1Q8TE04 598 aa13.13□□□□□ -0.31
TCOF1-204ENST00000427724 DISP3Q9P2K9 1392 aa13.13□□□□□ -0.31
TCOF1-204ENST00000427724 CTTNBP2Q8WZ74 1663 aa13.13□□□□□ -0.31
TCOF1-204ENST00000427724 CFAP65Q6ZU64 1925 aaKnown RBP13.13□□□□□ -0.31
TCOF1-204ENST00000427724 HSCBQ8IWL3 235 aa13.13□□□□□ -0.31
TCOF1-204ENST00000427724 C20orf194Q5TEA3 1177 aa13.13□□□□□ -0.31
TCOF1-204ENST00000427724 NSD3Q9BZ95 1437 aa13.13□□□□□ -0.31
TCOF1-204ENST00000427724 G3BP1Q13283 466 aaKnown RBP eCLIP13.13□□□□□ -0.312e-7■■■■□ 22.1
TCOF1-204ENST00000427724 ZCRB1Q8TBF4 217 aaKnown RBP13.13□□□□□ -0.31
TCOF1-204ENST00000427724 RFC4P35249 363 aa13.12□□□□□ -0.31
TCOF1-204ENST00000427724 CERKQ8TCT0 537 aa13.12□□□□□ -0.31
TCOF1-204ENST00000427724 CCDC30Q5VVM6 783 aa13.12□□□□□ -0.31
TCOF1-204ENST00000427724 IFNL2Q8IZJ0 200 aa13.12□□□□□ -0.31
TCOF1-204ENST00000427724 TTC21BQ7Z4L5 1316 aa13.12□□□□□ -0.31
TCOF1-204ENST00000427724 BCAR3O75815 825 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 BAG6P46379 1132 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 KDM6BO15054 1643 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 TMEM2Q9UHN6 1383 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 GOLGA6L3A6NEY3 463 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 DCTN1Q14203 1278 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 AMOTQ4VCS5 1084 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 HSP90AB2PQ58FF8 381 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 ZRANB1Q9UGI0 708 aa13.11□□□□□ -0.31
TCOF1-204ENST00000427724 CTDP1Q9Y5B0 961 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-204ENST00000427724 GNAT3A8MTJ3 354 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 GOLGA6L22H0YM25 854 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 POLD1P28340 1107 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 RXRBP28702 533 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 CCDC27Q2M243 656 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 ZKSCAN2Q63HK3 967 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 MCM10Q7L590 875 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 UBE2Q2Q8WVN8 375 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 APPP05067 770 aa13.1□□□□□ -0.31
TCOF1-204ENST00000427724 THUMPD2Q9BTF0 503 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms