RNA–Protein interactions for RNA: ENST00000427193.1

C9orf3-205, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-205ENST00000427193 LILRB3O75022 631 aa12.05□□□□□ -0.48
C9orf3-205ENST00000427193 F12P00748 615 aaPredicted RBP12.05□□□□□ -0.48
C9orf3-205ENST00000427193 RSPH6AQ9H0K4 717 aa12.05□□□□□ -0.48
C9orf3-205ENST00000427193 NUTM2BA6NNL0 878 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-205ENST00000427193 NUTM2EB1AL46 878 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-205ENST00000427193 C11orf95C9JLR9 678 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-205ENST00000427193 VARSP26640 1264 aaKnown RBP12.04□□□□□ -0.48
C9orf3-205ENST00000427193 CLK2P49760 499 aaKnown RBP12.04□□□□□ -0.48
C9orf3-205ENST00000427193 QPCTQ16769 361 aa12.04□□□□□ -0.48
C9orf3-205ENST00000427193 NUTM2DQ5VT03 806 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-205ENST00000427193 NUTM2AQ8IVF1 878 aaPredicted RBP12.04□□□□□ -0.48
C9orf3-205ENST00000427193 WASF2Q9Y6W5 498 aa12.04□□□□□ -0.48
C9orf3-205ENST00000427193 MPNDQ8N594 471 aa12.02□□□□□ -0.49
C9orf3-205ENST00000427193 MAP10Q9P2G4 905 aa12.02□□□□□ -0.49
C9orf3-205ENST00000427193 PLEKHG3A1L390 1219 aa12.01□□□□□ -0.49
C9orf3-205ENST00000427193 SENP2Q9HC62 589 aa12.01□□□□□ -0.49
C9orf3-205ENST00000427193 SLC24A1O60721 1099 aa12□□□□□ -0.49
C9orf3-205ENST00000427193 TSC1Q92574 1164 aa12□□□□□ -0.49
C9orf3-205ENST00000427193 PER1O15534 1290 aaPredicted RBP11.99□□□□□ -0.49
C9orf3-205ENST00000427193 HELBQ8NG08 1087 aaPredicted RBP11.99□□□□□ -0.49
C9orf3-205ENST00000427193 TLL2Q9Y6L7 1015 aa11.99□□□□□ -0.49
C9orf3-205ENST00000427193 TRIM47Q96LD4 638 aa11.98□□□□□ -0.49
C9orf3-205ENST00000427193 FAM174AQ8TBP5 190 aa11.97□□□□□ -0.49
C9orf3-205ENST00000427193 KIFC2Q96AC6 838 aa11.97□□□□□ -0.49
C9orf3-205ENST00000427193 ABCC9O60706 1549 aa11.96□□□□□ -0.49
C9orf3-205ENST00000427193 RTL5Q5HYW3 569 aaPredicted RBP11.96□□□□□ -0.49
C9orf3-205ENST00000427193 POLR3EQ9NVU0 708 aa11.96□□□□□ -0.49
C9orf3-205ENST00000427193 TREML4Q6UXN2 200 aa11.95□□□□□ -0.5
C9orf3-205ENST00000427193 ARMC2Q8NEN0 867 aa11.95□□□□□ -0.5
C9orf3-205ENST00000427193 KDM4CQ9H3R0 1056 aa11.95□□□□□ -0.5
C9orf3-205ENST00000427193 CAPN5O15484 640 aaPredicted RBP11.94□□□□□ -0.5
C9orf3-205ENST00000427193 FOXJ1Q92949 421 aa11.94□□□□□ -0.5
C9orf3-205ENST00000427193 DDRGK1Q96HY6 314 aa11.94□□□□□ -0.5
C9orf3-205ENST00000427193 GPBP1L1Q9HC44 474 aaPredicted RBP11.93□□□□□ -0.5
C9orf3-205ENST00000427193 SNRPBP14678 240 aaKnown RBP11.92□□□□□ -0.5
C9orf3-205ENST00000427193 NNTQ13423 1086 aa11.92□□□□□ -0.5
C9orf3-205ENST00000427193 SKIV2LQ15477 1246 aaKnown RBP11.92□□□□□ -0.5
C9orf3-205ENST00000427193 SH3D19Q5HYK7 790 aa11.92□□□□□ -0.5
C9orf3-205ENST00000427193 BPHLQ86WA6 291 aaPredicted RBP11.92□□□□□ -0.5
C9orf3-205ENST00000427193 CDK15Q96Q40 435 aa11.92□□□□□ -0.5
C9orf3-205ENST00000427193 AGERQ15109 404 aa11.91□□□□□ -0.5
C9orf3-205ENST00000427193 NBPF14Q5TI25 921 aa11.91□□□□□ -0.5
C9orf3-205ENST00000427193 ADH1CP00326 375 aa11.9□□□□□ -0.5
C9orf3-205ENST00000427193 LCE2AQ5TA79 106 aaPredicted RBP11.9□□□□□ -0.5
C9orf3-205ENST00000427193 FAM117AQ9C073 453 aa11.89□□□□□ -0.51
C9orf3-205ENST00000427193 BMP1P13497 986 aa11.88□□□□□ -0.51
C9orf3-205ENST00000427193 C4orf48Q5BLP8 95 aa11.88□□□□□ -0.51
C9orf3-205ENST00000427193 TRIM46Q7Z4K8 759 aa11.88□□□□□ -0.51
C9orf3-205ENST00000427193 WFS1O76024 890 aa11.87□□□□□ -0.51
C9orf3-205ENST00000427193 ARID5BQ14865 1188 aa11.86□□□□□ -0.51
C9orf3-205ENST00000427193 SH3RF1Q7Z6J0 888 aa11.86□□□□□ -0.51
C9orf3-205ENST00000427193 GPKOWQ92917 476 aaPredicted RBP eCLIP11.86□□□□□ -0.51
C9orf3-205ENST00000427193 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.86□□□□□ -0.51
C9orf3-205ENST00000427193 TIMP2P16035 220 aa11.85□□□□□ -0.51
C9orf3-205ENST00000427193 CTDSPL2Q05D32 466 aa11.85□□□□□ -0.51
C9orf3-205ENST00000427193 NFX1Q12986 1120 aaKnown RBP11.85□□□□□ -0.51
C9orf3-205ENST00000427193 NR5A1Q13285 461 aa11.85□□□□□ -0.51
C9orf3-205ENST00000427193 PPP2R2DQ66LE6 453 aa11.85□□□□□ -0.51
C9orf3-205ENST00000427193 C1QTNF2Q9BXJ5 285 aa11.85□□□□□ -0.51
C9orf3-205ENST00000427193 WDR4P57081 412 aaKnown RBP11.84□□□□□ -0.51
C9orf3-205ENST00000427193 SH3BP5LQ7L8J4 393 aa11.84□□□□□ -0.51
C9orf3-205ENST00000427193 KLF16Q9BXK1 252 aaPredicted RBP11.83□□□□□ -0.52
C9orf3-205ENST00000427193 PROCA1Q8NCQ7 364 aaPredicted RBP11.82□□□□□ -0.52
C9orf3-205ENST00000427193 TERTO14746 1132 aaKnown RBP11.81□□□□□ -0.52
C9orf3-205ENST00000427193 GRM5P41594 1212 aa11.81□□□□□ -0.52
C9orf3-205ENST00000427193 TRMT44Q8IYL2 757 aaKnown RBP11.81□□□□□ -0.52
C9orf3-205ENST00000427193 ATP1B4Q9UN42 357 aaPredicted RBP11.81□□□□□ -0.52
C9orf3-205ENST00000427193 MAP4K5Q9Y4K4 846 aa11.81□□□□□ -0.52
C9orf3-205ENST00000427193 FBXO31Q5XUX0 539 aaPredicted RBP11.8□□□□□ -0.52
C9orf3-205ENST00000427193 MRPL14Q6P1L8 145 aaKnown RBP11.8□□□□□ -0.52
C9orf3-205ENST00000427193 SCARF1Q14162 830 aa11.79□□□□□ -0.52
C9orf3-205ENST00000427193 LRRN4Q8WUT4 740 aa11.79□□□□□ -0.52
C9orf3-205ENST00000427193 ZFP42Q96MM3 310 aa11.79□□□□□ -0.52
C9orf3-205ENST00000427193 MAGEB6P1A0A0J9YX57 407 aa11.78□□□□□ -0.52
C9orf3-205ENST00000427193 ZIC2O95409 532 aaPredicted RBP11.78□□□□□ -0.52
C9orf3-205ENST00000427193 NR3C2P08235 984 aa11.78□□□□□ -0.52
C9orf3-205ENST00000427193 FKBPLQ9UIM3 349 aa11.78□□□□□ -0.52
C9orf3-205ENST00000427193 PDXDC2PQ6P474 469 aa11.77□□□□□ -0.53
C9orf3-205ENST00000427193 VASH1Q7L8A9 365 aaPredicted RBP11.77□□□□□ -0.53
C9orf3-205ENST00000427193 ITPKCQ96DU7 683 aa11.77□□□□□ -0.53
C9orf3-205ENST00000427193 ZC3H4Q9UPT8 1303 aaKnown RBP11.77□□□□□ -0.53
C9orf3-205ENST00000427193 FSHRP23945 695 aa11.76□□□□□ -0.53
C9orf3-205ENST00000427193 ERFEQ4G0M1 354 aa11.75□□□□□ -0.53
C9orf3-205ENST00000427193 CARD14Q9BXL6 1004 aa11.75□□□□□ -0.53
C9orf3-205ENST00000427193 ZFAND3Q9H8U3 227 aa11.75□□□□□ -0.53
C9orf3-205ENST00000427193 NXF1Q9UBU9 619 aaKnown RBP11.75□□□□□ -0.53
C9orf3-205ENST00000427193 WIPF1O43516 503 aa11.74□□□□□ -0.53
C9orf3-205ENST00000427193 AP1G2O75843 785 aa11.74□□□□□ -0.53
C9orf3-205ENST00000427193 NR6A1Q15406 480 aa11.74□□□□□ -0.53
C9orf3-205ENST00000427193 NPAS3Q8IXF0 933 aa11.74□□□□□ -0.53
C9orf3-205ENST00000427193 PURBQ96QR8 312 aaKnown RBP11.74□□□□□ -0.53
C9orf3-205ENST00000427193 GOPCQ9HD26 462 aa11.74□□□□□ -0.53
C9orf3-205ENST00000427193 SLC16A10Q8TF71 515 aa11.73□□□□□ -0.53
C9orf3-205ENST00000427193 ARHGAP9Q9BRR9 750 aa11.73□□□□□ -0.53
C9orf3-205ENST00000427193 CCDC116Q8IYX3 515 aa11.71□□□□□ -0.53
C9orf3-205ENST00000427193 CDV3Q9UKY7 258 aaKnown RBP11.71□□□□□ -0.53
C9orf3-205ENST00000427193 EMILIN1Q9Y6C2 1016 aa11.71□□□□□ -0.53
C9orf3-205ENST00000427193 PNMA1Q8ND90 353 aa11.7□□□□□ -0.54
C9orf3-205ENST00000427193 GPSM3Q9Y4H4 160 aa11.7□□□□□ -0.54
C9orf3-205ENST00000427193 UPP2O95045 317 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms