RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ARHGAP31Q2M1Z3 1444 aa13.93□□□□□ -0.18
LIMS1-207ENST00000422797 ASXL2Q76L83 1435 aa13.93□□□□□ -0.18
LIMS1-207ENST00000422797 SLC12A5Q9H2X9 1139 aa13.93□□□□□ -0.18
LIMS1-207ENST00000422797 ANO8Q9HCE9 1232 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-207ENST00000422797 TRAK1Q9UPV9 953 aa13.93□□□□□ -0.18
LIMS1-207ENST00000422797 RLBP1P12271 317 aa13.92□□□□□ -0.18
LIMS1-207ENST00000422797 FRMPD1Q5SYB0 1578 aa13.92□□□□□ -0.18
LIMS1-207ENST00000422797 DDX11L8A8MPP1 907 aa13.91□□□□□ -0.18
LIMS1-207ENST00000422797 U2AF1L5P0DN76 240 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-207ENST00000422797 U2AF1Q01081 240 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIMS1-207ENST00000422797 COL3A1P02461 1466 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-207ENST00000422797 NEXMIFQ5QGS0 1516 aa13.91□□□□□ -0.18
LIMS1-207ENST00000422797 CDC42BPGQ6DT37 1551 aa13.91□□□□□ -0.18
LIMS1-207ENST00000422797 CLTCQ00610 1675 aaKnown RBP13.91□□□□□ -0.18
LIMS1-207ENST00000422797 NEUROD2Q15784 382 aa13.9□□□□□ -0.18
LIMS1-207ENST00000422797 ALDH1L2Q3SY69 923 aa13.9□□□□□ -0.18
LIMS1-207ENST00000422797 SMC5Q8IY18 1101 aa13.9□□□□□ -0.18
LIMS1-207ENST00000422797 C22orf23Q9BZE7 217 aa13.9□□□□□ -0.18
LIMS1-207ENST00000422797 SLKQ9H2G2 1235 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-207ENST00000422797 RRP7AQ9Y3A4 280 aaKnown RBP13.9□□□□□ -0.18
LIMS1-207ENST00000422797 MCM4P33991 863 aa13.9□□□□□ -0.19
LIMS1-207ENST00000422797 ATF7IPQ6VMQ6 1270 aa13.9□□□□□ -0.19
LIMS1-207ENST00000422797 HSCBQ8IWL3 235 aa13.9□□□□□ -0.19
LIMS1-207ENST00000422797 CFAP44Q96MT7 982 aa13.9□□□□□ -0.19
LIMS1-207ENST00000422797 SMC4Q9NTJ3 1288 aa13.9□□□□□ -0.19
LIMS1-207ENST00000422797 CIZ1Q9ULV3 898 aaPredicted RBP13.9□□□□□ -0.19
LIMS1-207ENST00000422797 GOLGA6L3A6NEY3 463 aa13.89□□□□□ -0.19
LIMS1-207ENST00000422797 BRPF1P55201 1214 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-207ENST00000422797 POGKQ9P215 609 aa13.89□□□□□ -0.19
LIMS1-207ENST00000422797 CHGAP10645 457 aaKnown RBP13.88□□□□□ -0.19
LIMS1-207ENST00000422797 SNX21Q969T3 373 aa13.88□□□□□ -0.19
LIMS1-207ENST00000422797 TERF2IPQ9NYB0 399 aa13.88□□□□□ -0.19
LIMS1-207ENST00000422797 PPIP5K1Q6PFW1 1433 aa13.88□□□□□ -0.19
LIMS1-207ENST00000422797 NCOA3Q9Y6Q9 1424 aa13.88□□□□□ -0.19
LIMS1-207ENST00000422797 FSD2A1L4K1 749 aa13.87□□□□□ -0.19
LIMS1-207ENST00000422797 CALD1Q05682 793 aaKnown RBP13.87□□□□□ -0.19
LIMS1-207ENST00000422797 PLEKHF1Q96S99 279 aa13.87□□□□□ -0.19
LIMS1-207ENST00000422797 TMPOP42166 694 aaKnown RBP13.86□□□□□ -0.19
LIMS1-207ENST00000422797 TNNT2P45379 298 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-207ENST00000422797 RBM25P49756 843 aaKnown RBP13.86□□□□□ -0.19
LIMS1-207ENST00000422797 NEO1Q92859 1461 aa13.86□□□□□ -0.19
LIMS1-207ENST00000422797 TRIM27P14373 513 aa13.85□□□□□ -0.19
LIMS1-207ENST00000422797 MRE11P49959 708 aa13.85□□□□□ -0.19
LIMS1-207ENST00000422797 CD109Q6YHK3 1445 aa13.85□□□□□ -0.19
LIMS1-207ENST00000422797 A0A1W2PP64 1363 aa13.85□□□□□ -0.19
LIMS1-207ENST00000422797 PNPLA6Q8IY17 1366 aa13.85□□□□□ -0.19
LIMS1-207ENST00000422797 ITPRIPQ8IWB1 547 aa13.85□□□□□ -0.19
LIMS1-207ENST00000422797 SLC52A1Q9NWF4 448 aa13.85□□□□□ -0.19
LIMS1-207ENST00000422797 NUCB1Q02818 461 aa13.84□□□□□ -0.19
LIMS1-207ENST00000422797 EXOSC9Q06265 439 aaKnown RBP13.84□□□□□ -0.19
LIMS1-207ENST00000422797 SKOR2Q2VWA4 1001 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-207ENST00000422797 BCL2L13Q9BXK5 485 aa13.84□□□□□ -0.19
LIMS1-207ENST00000422797 ZBTB40Q9NUA8 1239 aa13.84□□□□□ -0.19
LIMS1-207ENST00000422797 SSH1Q8WYL5 1049 aa13.83□□□□□ -0.2
LIMS1-207ENST00000422797 ARHGAP45Q92619 1136 aa13.83□□□□□ -0.2
LIMS1-207ENST00000422797 GCC1Q96CN9 775 aa13.83□□□□□ -0.2
LIMS1-207ENST00000422797 PIK3R4Q99570 1358 aa13.82□□□□□ -0.2
LIMS1-207ENST00000422797 MFAP1P55081 439 aaKnown RBP13.82□□□□□ -0.2
LIMS1-207ENST00000422797 BMP2KLQ5H9B9 411 aa13.82□□□□□ -0.2
LIMS1-207ENST00000422797 HDGFL2Q7Z4V5 671 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-207ENST00000422797 GBP4Q96PP9 640 aa13.82□□□□□ -0.2
LIMS1-207ENST00000422797 TRIM35Q9UPQ4 493 aa13.82□□□□□ -0.2
LIMS1-207ENST00000422797 TNNQ9UQP3 1299 aa13.82□□□□□ -0.2
LIMS1-207ENST00000422797 DIAPH1O60610 1272 aaKnown RBP13.81□□□□□ -0.2
LIMS1-207ENST00000422797 FCHSD2O94868 740 aa13.81□□□□□ -0.2
LIMS1-207ENST00000422797 NPM1P06748 294 aaKnown RBP eCLIP13.81□□□□□ -0.2
LIMS1-207ENST00000422797 TMEM132EQ6IEE7 984 aa13.81□□□□□ -0.2
LIMS1-207ENST00000422797 KIF24Q5T7B8 1368 aa13.81□□□□□ -0.2
LIMS1-207ENST00000422797 PTPRMP28827 1452 aa13.8□□□□□ -0.2
LIMS1-207ENST00000422797 TRAK2O60296 914 aa13.8□□□□□ -0.2
LIMS1-207ENST00000422797 PRKCSHP14314 528 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-207ENST00000422797 KIF20BQ96Q89 1820 aa13.8□□□□□ -0.2
LIMS1-207ENST00000422797 PTCH1Q13635 1447 aa13.8□□□□□ -0.2
LIMS1-207ENST00000422797 U2SURPO15042 1029 aaKnown RBP13.8□□□□□ -0.2
LIMS1-207ENST00000422797 DDIT3P35638 169 aa13.8□□□□□ -0.2
LIMS1-207ENST00000422797 NOB1Q9ULX3 412 aaKnown RBP13.8□□□□□ -0.2
LIMS1-207ENST00000422797 SIGLEC1Q9BZZ2 1709 aa13.79□□□□□ -0.2
LIMS1-207ENST00000422797 ATP7BP35670 1465 aa13.79□□□□□ -0.2
LIMS1-207ENST00000422797 CHD1LQ86WJ1 897 aa13.79□□□□□ -0.2
LIMS1-207ENST00000422797 TMEM57Q8N5G2 664 aa13.79□□□□□ -0.2
LIMS1-207ENST00000422797 TSR2Q969E8 191 aaKnown RBP13.79□□□□□ -0.2
LIMS1-207ENST00000422797 DLC1Q96QB1 1528 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 DIP2CQ9Y2E4 1556 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 FAM135BQ49AJ0 1406 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 KIF13AQ9H1H9 1805 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 CLCN1P35523 988 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 RIPK4P57078 832 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 SRPK2P78362 688 aaKnown RBP13.78□□□□□ -0.2
LIMS1-207ENST00000422797 GGT6Q6P531 493 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 ILDR1Q86SU0 546 aaPredicted RBP13.78□□□□□ -0.2
LIMS1-207ENST00000422797 CABP2Q9NPB3 220 aa13.78□□□□□ -0.2
LIMS1-207ENST00000422797 XRCC6P12956 609 aaKnown RBP eCLIP13.77□□□□□ -0.21
LIMS1-207ENST00000422797 LMOD3Q0VAK6 560 aa13.77□□□□□ -0.21
LIMS1-207ENST00000422797 ZNF692Q9BU19 519 aaPredicted RBP13.77□□□□□ -0.21
LIMS1-207ENST00000422797 CD163L1Q9NR16 1453 aa13.77□□□□□ -0.21
LIMS1-207ENST00000422797 YTHDC2Q9H6S0 1430 aaKnown RBP13.76□□□□□ -0.21
LIMS1-207ENST00000422797 LRRC7Q96NW7 1537 aa13.76□□□□□ -0.21
LIMS1-207ENST00000422797 HSP90AB1P08238 724 aaKnown RBP13.76□□□□□ -0.21
LIMS1-207ENST00000422797 TMEM131LA2VDJ0 1609 aa13.76□□□□□ -0.21
LIMS1-207ENST00000422797 FYB1O15117 783 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms