RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ESCO1Q5FWF5 840 aa23.16■■□□□ 1.3
CCDC28B-202ENST00000421922 PHF8Q9UPP1 1060 aa23.16■■□□□ 1.3
CCDC28B-202ENST00000421922 NRKQ7Z2Y5 1582 aa23.16■■□□□ 1.3
CCDC28B-202ENST00000421922 POLR3AO14802 1390 aaPredicted RBP23.16■■□□□ 1.3
CCDC28B-202ENST00000421922 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.16■■□□□ 1.3
CCDC28B-202ENST00000421922 NLRP13Q86W25 1043 aa23.15■■□□□ 1.3
CCDC28B-202ENST00000421922 USP6P35125 1406 aa23.14■■□□□ 1.3
CCDC28B-202ENST00000421922 PIP4K2BP78356 416 aa23.14■■□□□ 1.29
CCDC28B-202ENST00000421922 BRD4O60885 1362 aaPredicted RBP23.13■■□□□ 1.29
CCDC28B-202ENST00000421922 SCAF1Q9H7N4 1312 aaKnown RBP23.13■■□□□ 1.29
CCDC28B-202ENST00000421922 C1orf167Q5SNV9 1468 aa23.13■■□□□ 1.29
CCDC28B-202ENST00000421922 MST1RQ04912 1400 aa23.11■■□□□ 1.29
CCDC28B-202ENST00000421922 GGNBP2Q9H3C7 697 aa23.11■■□□□ 1.29
CCDC28B-202ENST00000421922 TOM1O60784 492 aa23.09■■□□□ 1.29
CCDC28B-202ENST00000421922 TTC21BQ7Z4L5 1316 aa23.09■■□□□ 1.29
CCDC28B-202ENST00000421922 TTC21AQ8NDW8 1320 aa23.09■■□□□ 1.29
CCDC28B-202ENST00000421922 FYB1O15117 783 aa23.08■■□□□ 1.29
CCDC28B-202ENST00000421922 PPP2R1AP30153 589 aa23.08■■□□□ 1.29
CCDC28B-202ENST00000421922 TNNT2P45379 298 aaPredicted RBP23.08■■□□□ 1.28
CCDC28B-202ENST00000421922 COG3Q96JB2 828 aa23.07■■□□□ 1.28
CCDC28B-202ENST00000421922 YTHDC1Q96MU7 727 aaKnown RBP23.07■■□□□ 1.28
CCDC28B-202ENST00000421922 PSME1Q06323 249 aa23.06■■□□□ 1.28
CCDC28B-202ENST00000421922 NME9Q86XW9 330 aa23.06■■□□□ 1.28
CCDC28B-202ENST00000421922 ORAI2Q96SN7 254 aa23.06■■□□□ 1.28
CCDC28B-202ENST00000421922 PAK3O75914 559 aaPredicted RBP23.04■■□□□ 1.28
CCDC28B-202ENST00000421922 CCDC184Q52MB2 194 aa23.04■■□□□ 1.28
CCDC28B-202ENST00000421922 SSH2Q76I76 1423 aa23.02■■□□□ 1.28
CCDC28B-202ENST00000421922 FAM9BQ8IZU0 186 aa23■■□□□ 1.27
CCDC28B-202ENST00000421922 PIK3C2AO00443 1686 aa23■■□□□ 1.27
CCDC28B-202ENST00000421922 FOXO3O43524 673 aa22.99■■□□□ 1.27
CCDC28B-202ENST00000421922 CFAP53Q96M91 514 aa22.99■■□□□ 1.27
CCDC28B-202ENST00000421922 NPHP3Q7Z494 1330 aa22.98■■□□□ 1.27
CCDC28B-202ENST00000421922 SLAIN2Q9P270 581 aa22.98■■□□□ 1.27
CCDC28B-202ENST00000421922 OVOS2A0A0J9YW53 1432 aa22.97■■□□□ 1.27
CCDC28B-202ENST00000421922 OVOS2Q6IE36 1432 aa22.97■■□□□ 1.27
CCDC28B-202ENST00000421922 ABTB2Q8N961 1025 aa22.97■■□□□ 1.27
CCDC28B-202ENST00000421922 ZRANB1Q9UGI0 708 aa22.96■■□□□ 1.27
CCDC28B-202ENST00000421922 USP54Q70EL1 1684 aa22.96■■□□□ 1.27
CCDC28B-202ENST00000421922 MAP2P11137 1827 aaKnown RBP22.95■■□□□ 1.26
CCDC28B-202ENST00000421922 KRT28Q7Z3Y7 464 aa22.95■■□□□ 1.26
CCDC28B-202ENST00000421922 PHF23Q9BUL5 403 aaPredicted RBP22.95■■□□□ 1.26
CCDC28B-202ENST00000421922 TRPM3Q9HCF6 1732 aaPredicted RBP22.95■■□□□ 1.26
CCDC28B-202ENST00000421922 NLRP6P59044 892 aa22.94■■□□□ 1.26
CCDC28B-202ENST00000421922 XPCQ01831 940 aaPredicted RBP22.94■■□□□ 1.26
CCDC28B-202ENST00000421922 WDR43Q15061 677 aaKnown RBP eCLIP22.94■■□□□ 1.26
CCDC28B-202ENST00000421922 USP31Q70CQ4 1352 aa22.94■■□□□ 1.26
CCDC28B-202ENST00000421922 MTHFSP49914 203 aa22.93■■□□□ 1.26
CCDC28B-202ENST00000421922 LMOD2Q6P5Q4 547 aa22.92■■□□□ 1.26
CCDC28B-202ENST00000421922 BRINP3Q76B58 766 aa22.92■■□□□ 1.26
CCDC28B-202ENST00000421922 PNISRQ8TF01 805 aaKnown RBP22.92■■□□□ 1.26
CCDC28B-202ENST00000421922 AATKQ6ZMQ8 1374 aa22.92■■□□□ 1.26
CCDC28B-202ENST00000421922 NUTM2GQ5VZR2 741 aa22.91■■□□□ 1.26
CCDC28B-202ENST00000421922 PPM1GO15355 546 aaPredicted RBP22.89■■□□□ 1.25
CCDC28B-202ENST00000421922 SBNO1A3KN83 1393 aa22.88■■□□□ 1.25
CCDC28B-202ENST00000421922 MARF1Q9Y4F3 1742 aaKnown RBP22.88■■□□□ 1.25
CCDC28B-202ENST00000421922 SOX12O15370 315 aa22.88■■□□□ 1.25
CCDC28B-202ENST00000421922 ALS2Q96Q42 1657 aa22.87■■□□□ 1.25
CCDC28B-202ENST00000421922 NHSL1Q5SYE7 1610 aa22.86■■□□□ 1.25
CCDC28B-202ENST00000421922 PXDNQ92626 1479 aa22.86■■□□□ 1.25
CCDC28B-202ENST00000421922 TNS3Q68CZ2 1445 aa22.86■■□□□ 1.25
CCDC28B-202ENST00000421922 SMG6Q86US8 1419 aaKnown RBP22.86■■□□□ 1.25
CCDC28B-202ENST00000421922 CDK12Q9NYV4 1490 aaPredicted RBP22.85■■□□□ 1.25
CCDC28B-202ENST00000421922 DDX17Q92841 729 aaKnown RBP22.85■■□□□ 1.25
CCDC28B-202ENST00000421922 POLKQ9UBT6 870 aa22.85■■□□□ 1.25
CCDC28B-202ENST00000421922 ROBO1Q9Y6N7 1651 aa22.85■■□□□ 1.25
CCDC28B-202ENST00000421922 SHPRHQ149N8 1683 aa22.84■■□□□ 1.25
CCDC28B-202ENST00000421922 CENPBP07199 599 aaPredicted RBP22.84■■□□□ 1.25
CCDC28B-202ENST00000421922 HNRNPUQ00839 825 aaKnown RBP eCLIP22.84■■□□□ 1.25
CCDC28B-202ENST00000421922 NUDCQ9Y266 331 aa22.84■■□□□ 1.25
CCDC28B-202ENST00000421922 RRS1Q15050 365 aaKnown RBP22.83■■□□□ 1.25
CCDC28B-202ENST00000421922 KCNH5Q8NCM2 988 aa22.83■■□□□ 1.25
CCDC28B-202ENST00000421922 EMILIN1Q9Y6C2 1016 aa22.83■■□□□ 1.25
CCDC28B-202ENST00000421922 ARHGEF10O15013 1369 aa22.83■■□□□ 1.25
CCDC28B-202ENST00000421922 FBLN1P23142 703 aa22.82■■□□□ 1.24
CCDC28B-202ENST00000421922 RGS17Q9UGC6 210 aaPredicted RBP22.82■■□□□ 1.24
CCDC28B-202ENST00000421922 DIAPH1O60610 1272 aaKnown RBP22.81■■□□□ 1.24
CCDC28B-202ENST00000421922 LTN1O94822 1766 aa22.8■■□□□ 1.24
CCDC28B-202ENST00000421922 INSRP06213 1382 aa22.8■■□□□ 1.24
CCDC28B-202ENST00000421922 SLIT3O75094 1523 aa22.79■■□□□ 1.24
CCDC28B-202ENST00000421922 COL3A1P02461 1466 aaPredicted RBP22.79■■□□□ 1.24
CCDC28B-202ENST00000421922 SPATA31A3Q5VYP0 1347 aa22.79■■□□□ 1.24
CCDC28B-202ENST00000421922 PLEKHG5O94827 1062 aa22.79■■□□□ 1.24
CCDC28B-202ENST00000421922 AMPHP49418 695 aa22.79■■□□□ 1.24
CCDC28B-202ENST00000421922 SOS2Q07890 1332 aaPredicted RBP22.78■■□□□ 1.24
CCDC28B-202ENST00000421922 ADAMTS8Q9UP79 889 aa22.78■■□□□ 1.24
CCDC28B-202ENST00000421922 FLT4P35916 1363 aa22.77■■□□□ 1.24
CCDC28B-202ENST00000421922 PNPLA6Q8IY17 1366 aa22.77■■□□□ 1.24
CCDC28B-202ENST00000421922 U2SURPO15042 1029 aaKnown RBP22.77■■□□□ 1.24
CCDC28B-202ENST00000421922 BLMP54132 1417 aaPredicted RBP22.77■■□□□ 1.24
CCDC28B-202ENST00000421922 AHDC1Q5TGY3 1603 aaPredicted RBP22.77■■□□□ 1.24
CCDC28B-202ENST00000421922 USP19O94966 1318 aa22.76■■□□□ 1.23
CCDC28B-202ENST00000421922 MAP3K19Q56UN5 1328 aa22.76■■□□□ 1.23
CCDC28B-202ENST00000421922 NFAT5O94916 1531 aa22.76■■□□□ 1.23
CCDC28B-202ENST00000421922 PEAK1Q9H792 1746 aa22.76■■□□□ 1.23
CCDC28B-202ENST00000421922 PHRF1Q9P1Y6 1649 aaKnown RBP22.76■■□□□ 1.23
CCDC28B-202ENST00000421922 KIF24Q5T7B8 1368 aa22.76■■□□□ 1.23
CCDC28B-202ENST00000421922 U2AF1L5P0DN76 240 aaPredicted RBP22.75■■□□□ 1.23
CCDC28B-202ENST00000421922 U2AF1Q01081 240 aaKnown RBP eCLIP22.75■■□□□ 1.23
CCDC28B-202ENST00000421922 RTL1A6NKG5 1358 aa22.75■■□□□ 1.23
CCDC28B-202ENST00000421922 ZBTB7CA1YPR0 619 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms