RNA–Protein interactions for RNA: ENST00000419181.5

GTF3A-202, Transcript of general transcription factor IIIA, humanhuman

TSL 1 (best)

Gene GTF3A, Length 1,191 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-202ENST00000419181 BCL9LQ86UU0 1499 aa28.85■■■□□ 2.21
GTF3A-202ENST00000419181 CDK12Q9NYV4 1490 aaPredicted RBP28.85■■■□□ 2.21
GTF3A-202ENST00000419181 HAP1P54257 671 aaPredicted RBP28.84■■■□□ 2.21
GTF3A-202ENST00000419181 TIMELESSQ9UNS1 1208 aa28.84■■■□□ 2.21
GTF3A-202ENST00000419181 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.83■■■□□ 2.21
GTF3A-202ENST00000419181 PLEKHG5O94827 1062 aa28.83■■■□□ 2.21
GTF3A-202ENST00000419181 SLIT2O94813 1529 aa28.83■■■□□ 2.21
GTF3A-202ENST00000419181 ATRNO75882 1429 aa28.81■■■□□ 2.2
GTF3A-202ENST00000419181 CABP1Q9NZU7 370 aa28.81■■■□□ 2.2
GTF3A-202ENST00000419181 PLCH1Q4KWH8 1693 aa28.8■■■□□ 2.2
GTF3A-202ENST00000419181 RBM6P78332 1123 aaKnown RBP28.8■■■□□ 2.2
GTF3A-202ENST00000419181 TRPC5Q9UL62 973 aaPredicted RBP28.8■■■□□ 2.2
GTF3A-202ENST00000419181 NWD2Q9ULI1 1742 aa28.78■■■□□ 2.2
GTF3A-202ENST00000419181 BRD4O60885 1362 aaPredicted RBP28.77■■■□□ 2.2
GTF3A-202ENST00000419181 ATAD2Q6PL18 1390 aa28.77■■■□□ 2.2
GTF3A-202ENST00000419181 PHRF1Q9P1Y6 1649 aaKnown RBP28.77■■■□□ 2.2
GTF3A-202ENST00000419181 USP6P35125 1406 aa28.77■■■□□ 2.2
GTF3A-202ENST00000419181 CCER1Q8TC90 406 aaPredicted RBP28.75■■■□□ 2.19
GTF3A-202ENST00000419181 RGS12O14924 1447 aa28.75■■■□□ 2.19
GTF3A-202ENST00000419181 AKAP12Q02952 1782 aa28.75■■■□□ 2.19
GTF3A-202ENST00000419181 UNC5CLQ8IV45 518 aa28.74■■■□□ 2.19
GTF3A-202ENST00000419181 COL14A1Q05707 1796 aaKnown RBP28.73■■■□□ 2.19
GTF3A-202ENST00000419181 FAM83GA6ND36 823 aa28.72■■■□□ 2.19
GTF3A-202ENST00000419181 SSH2Q76I76 1423 aa28.71■■■□□ 2.19
GTF3A-202ENST00000419181 ST20-MTHFSA0A0A6YYL1 179 aa28.71■■■□□ 2.19
GTF3A-202ENST00000419181 ABTB2Q8N961 1025 aa28.71■■■□□ 2.19
GTF3A-202ENST00000419181 TESK2Q96S53 571 aa28.71■■■□□ 2.19
GTF3A-202ENST00000419181 NUTM2GQ5VZR2 741 aa28.7■■■□□ 2.18
GTF3A-202ENST00000419181 CPSF1Q10570 1443 aaKnown RBP28.69■■■□□ 2.18
GTF3A-202ENST00000419181 NRKQ7Z2Y5 1582 aa28.69■■■□□ 2.18
GTF3A-202ENST00000419181 NRAPQ86VF7 1730 aa28.69■■■□□ 2.18
GTF3A-202ENST00000419181 USP47Q96K76 1375 aa28.68■■■□□ 2.18
GTF3A-202ENST00000419181 USP19O94966 1318 aa28.68■■■□□ 2.18
GTF3A-202ENST00000419181 GLI3P10071 1580 aa28.67■■■□□ 2.18
GTF3A-202ENST00000419181 GJD4Q96KN9 370 aaPredicted RBP28.67■■■□□ 2.18
GTF3A-202ENST00000419181 MON2Q7Z3U7 1717 aa28.66■■■□□ 2.18
GTF3A-202ENST00000419181 PUS7Q96PZ0 661 aaKnown RBP28.66■■■□□ 2.18
GTF3A-202ENST00000419181 ZNF692Q9BU19 519 aaPredicted RBP28.66■■■□□ 2.18
GTF3A-202ENST00000419181 PIK3C2AO00443 1686 aa28.66■■■□□ 2.18
GTF3A-202ENST00000419181 NLRP13Q86W25 1043 aa28.64■■■□□ 2.18
GTF3A-202ENST00000419181 KIAA0232Q92628 1395 aa28.63■■■□□ 2.17
GTF3A-202ENST00000419181 VPS72Q15906 364 aa28.63■■■□□ 2.17
GTF3A-202ENST00000419181 UPF1Q92900 1129 aaKnown RBP eCLIP28.63■■■□□ 2.17
GTF3A-202ENST00000419181 PRDM11Q9NQV5 511 aa28.63■■■□□ 2.17
GTF3A-202ENST00000419181 CD163L1Q9NR16 1453 aa28.63■■■□□ 2.17
GTF3A-202ENST00000419181 SLC24A1O60721 1099 aa28.62■■■□□ 2.17
GTF3A-202ENST00000419181 BTG4Q9NY30 223 aa28.62■■■□□ 2.17
GTF3A-202ENST00000419181 KTN1Q86UP2 1357 aaKnown RBP28.62■■■□□ 2.17
GTF3A-202ENST00000419181 SLIT3O75094 1523 aa28.6■■■□□ 2.17
GTF3A-202ENST00000419181 TTC21BQ7Z4L5 1316 aa28.6■■■□□ 2.17
GTF3A-202ENST00000419181 ZC3H6P61129 1189 aaKnown RBP28.59■■■□□ 2.17
GTF3A-202ENST00000419181 CPDO75976 1380 aa28.59■■■□□ 2.17
GTF3A-202ENST00000419181 NLRP6P59044 892 aa28.58■■■□□ 2.17
GTF3A-202ENST00000419181 TMC1Q8TDI8 760 aa28.58■■■□□ 2.17
GTF3A-202ENST00000419181 TTC21AQ8NDW8 1320 aa28.58■■■□□ 2.17
GTF3A-202ENST00000419181 GCP02774 474 aa28.57■■■□□ 2.16
GTF3A-202ENST00000419181 SLC12A5Q9H2X9 1139 aa28.57■■■□□ 2.16
GTF3A-202ENST00000419181 CHRNA2Q15822 529 aa28.56■■■□□ 2.16
GTF3A-202ENST00000419181 LMO7Q8WWI1 1683 aa28.55■■■□□ 2.16
GTF3A-202ENST00000419181 NINLQ9Y2I6 1382 aa28.55■■■□□ 2.16
GTF3A-202ENST00000419181 CCDC9Q9Y3X0 531 aaKnown RBP28.53■■■□□ 2.16
GTF3A-202ENST00000419181 A0A1W2PP64 1363 aa28.52■■■□□ 2.16
GTF3A-202ENST00000419181 TMF1P82094 1093 aa28.52■■■□□ 2.16
GTF3A-202ENST00000419181 HDGFL2Q7Z4V5 671 aaPredicted RBP28.52■■■□□ 2.16
GTF3A-202ENST00000419181 USP54Q70EL1 1684 aa28.51■■■□□ 2.16
GTF3A-202ENST00000419181 TERF2IPQ9NYB0 399 aa28.51■■■□□ 2.15
GTF3A-202ENST00000419181 CAMTA1Q9Y6Y1 1673 aa28.51■■■□□ 2.15
GTF3A-202ENST00000419181 EDC4Q6P2E9 1401 aaKnown RBP28.51■■■□□ 2.15
GTF3A-202ENST00000419181 BRWD3Q6RI45 1802 aa28.49■■■□□ 2.15
GTF3A-202ENST00000419181 ONECUT3O60422 494 aaPredicted RBP28.49■■■□□ 2.15
GTF3A-202ENST00000419181 SPATA31A5Q5VU36 1347 aa28.48■■■□□ 2.15
GTF3A-202ENST00000419181 SPATA31A7Q8IWB4 1347 aa28.48■■■□□ 2.15
GTF3A-202ENST00000419181 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.47■■■□□ 2.15
GTF3A-202ENST00000419181 USP31Q70CQ4 1352 aa28.47■■■□□ 2.15
GTF3A-202ENST00000419181 EP400Q96L91 3159 aa28.45■■■□□ 2.15
GTF3A-202ENST00000419181 NFAT5O94916 1531 aa28.45■■■□□ 2.15
GTF3A-202ENST00000419181 SEPT12Q8IYM1 358 aa28.45■■■□□ 2.14
GTF3A-202ENST00000419181 COL18A1P39060 1754 aa28.45■■■□□ 2.14
GTF3A-202ENST00000419181 KCNH5Q8NCM2 988 aa28.44■■■□□ 2.14
GTF3A-202ENST00000419181 STRN4Q9NRL3 753 aa28.44■■■□□ 2.14
GTF3A-202ENST00000419181 AATKQ6ZMQ8 1374 aa28.44■■■□□ 2.14
GTF3A-202ENST00000419181 CDCA8Q53HL2 280 aa28.43■■■□□ 2.14
GTF3A-202ENST00000419181 NME9Q86XW9 330 aa28.43■■■□□ 2.14
GTF3A-202ENST00000419181 SPATA31A1Q5TZJ5 1347 aa28.43■■■□□ 2.14
GTF3A-202ENST00000419181 COL5A2P05997 1499 aaPredicted RBP28.42■■■□□ 2.14
GTF3A-202ENST00000419181 ANKRD36BQ8N2N9 1353 aa28.42■■■□□ 2.14
GTF3A-202ENST00000419181 FAM98CQ17RN3 349 aaKnown RBP28.42■■■□□ 2.14
GTF3A-202ENST00000419181 ZRANB1Q9UGI0 708 aa28.42■■■□□ 2.14
GTF3A-202ENST00000419181 THSD7AQ9UPZ6 1657 aa28.42■■■□□ 2.14
GTF3A-202ENST00000419181 MYOM1P52179 1685 aa28.4■■■□□ 2.14
GTF3A-202ENST00000419181 EVA1CP58658 441 aa28.39■■■□□ 2.14
GTF3A-202ENST00000419181 ARHGEF25Q86VW2 580 aa28.39■■■□□ 2.14
GTF3A-202ENST00000419181 OVOS2A0A0J9YW53 1432 aa28.38■■■□□ 2.13
GTF3A-202ENST00000419181 OVOS2Q6IE36 1432 aa28.38■■■□□ 2.13
GTF3A-202ENST00000419181 ZBTB7CA1YPR0 619 aa28.38■■■□□ 2.13
GTF3A-202ENST00000419181 SOX12O15370 315 aa28.37■■■□□ 2.13
GTF3A-202ENST00000419181 LARP1Q6PKG0 1096 aaKnown RBP28.37■■■□□ 2.13
GTF3A-202ENST00000419181 A0A0G2JS52 829 aa28.36■■■□□ 2.13
GTF3A-202ENST00000419181 EIF4G2P78344 907 aaKnown RBP eCLIP28.36■■■□□ 2.13
GTF3A-202ENST00000419181 MYT1Q01538 1121 aa28.36■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms