RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 DLC1Q96QB1 1528 aa24.82■■□□□ 1.56
CHMP3-203ENST00000409225 DISP2A7MBM2 1401 aa24.82■■□□□ 1.56
CHMP3-203ENST00000409225 TNS1Q9HBL0 1735 aaKnown RBP24.82■■□□□ 1.56
CHMP3-203ENST00000409225 THSD7AQ9UPZ6 1657 aa24.81■■□□□ 1.56
CHMP3-203ENST00000409225 ADGRB2O60241 1585 aa24.81■■□□□ 1.56
CHMP3-203ENST00000409225 ACIN1Q9UKV3 1341 aaKnown RBP24.81■■□□□ 1.56
CHMP3-203ENST00000409225 PRDM11Q9NQV5 511 aa24.79■■□□□ 1.56
CHMP3-203ENST00000409225 MINK1Q8N4C8 1332 aaPredicted RBP24.79■■□□□ 1.56
CHMP3-203ENST00000409225 PRR36Q9H6K5 1346 aa24.79■■□□□ 1.56
CHMP3-203ENST00000409225 PAK3O75914 559 aaPredicted RBP24.78■■□□□ 1.56
CHMP3-203ENST00000409225 TRIM37O94972 964 aa24.77■■□□□ 1.56
CHMP3-203ENST00000409225 CAMKK2Q96RR4 588 aa24.77■■□□□ 1.56
CHMP3-203ENST00000409225 TRAK1Q9UPV9 953 aa24.77■■□□□ 1.56
CHMP3-203ENST00000409225 CRYBG1Q9Y4K1 1723 aa24.76■■□□□ 1.55
CHMP3-203ENST00000409225 NGDNQ8NEJ9 315 aaKnown RBP24.76■■□□□ 1.55
CHMP3-203ENST00000409225 EIF3AQ14152 1382 aaKnown RBP24.75■■□□□ 1.55
CHMP3-203ENST00000409225 TULP4Q9NRJ4 1543 aa24.75■■□□□ 1.55
CHMP3-203ENST00000409225 SPATA31A1Q5TZJ5 1347 aa24.74■■□□□ 1.55
CHMP3-203ENST00000409225 APBA3O96018 575 aa24.73■■□□□ 1.55
CHMP3-203ENST00000409225 CHRNA2Q15822 529 aa24.73■■□□□ 1.55
CHMP3-203ENST00000409225 FAM196AQ6ZSG2 479 aa24.73■■□□□ 1.55
CHMP3-203ENST00000409225 STRN4Q9NRL3 753 aa24.73■■□□□ 1.55
CHMP3-203ENST00000409225 ADGRB1O14514 1584 aa24.72■■□□□ 1.55
CHMP3-203ENST00000409225 KIAA0232Q92628 1395 aa24.71■■□□□ 1.55
CHMP3-203ENST00000409225 WASLO00401 505 aaPredicted RBP24.71■■□□□ 1.55
CHMP3-203ENST00000409225 USP35Q9P2H5 1018 aa24.68■■□□□ 1.54
CHMP3-203ENST00000409225 PARD3Q8TEW0 1356 aa24.67■■□□□ 1.54
CHMP3-203ENST00000409225 YY1P25490 414 aa24.67■■□□□ 1.54
CHMP3-203ENST00000409225 ZC3H6P61129 1189 aaKnown RBP24.67■■□□□ 1.54
CHMP3-203ENST00000409225 NUTM2GQ5VZR2 741 aa24.65■■□□□ 1.54
CHMP3-203ENST00000409225 PHRF1Q9P1Y6 1649 aaKnown RBP24.64■■□□□ 1.54
CHMP3-203ENST00000409225 PDE3BQ13370 1112 aa24.64■■□□□ 1.54
CHMP3-203ENST00000409225 RREB1Q92766 1687 aa24.63■■□□□ 1.53
CHMP3-203ENST00000409225 EVA1CP58658 441 aa24.63■■□□□ 1.53
CHMP3-203ENST00000409225 KDM2AQ9Y2K7 1162 aa24.63■■□□□ 1.53
CHMP3-203ENST00000409225 NUP188Q5SRE5 1749 aa24.62■■□□□ 1.53
CHMP3-203ENST00000409225 NBPF8Q3BBV2 869 aa24.62■■□□□ 1.53
CHMP3-203ENST00000409225 NBPF14Q5TI25 921 aa24.62■■□□□ 1.53
CHMP3-203ENST00000409225 NUDT16Q96DE0 195 aaKnown RBP24.61■■□□□ 1.53
CHMP3-203ENST00000409225 SSH2Q76I76 1423 aa24.61■■□□□ 1.53
CHMP3-203ENST00000409225 ATP7BP35670 1465 aa24.6■■□□□ 1.53
CHMP3-203ENST00000409225 BARGINQ6ZT62 677 aa24.6■■□□□ 1.53
CHMP3-203ENST00000409225 ITSN1Q15811 1721 aa24.6■■□□□ 1.53
CHMP3-203ENST00000409225 LARP1Q6PKG0 1096 aaKnown RBP24.58■■□□□ 1.53
CHMP3-203ENST00000409225 DCAF11Q8TEB1 546 aa24.58■■□□□ 1.53
CHMP3-203ENST00000409225 PPP1R1BQ9UD71 204 aaPredicted RBP24.58■■□□□ 1.53
CHMP3-203ENST00000409225 TCP11L2Q8N4U5 519 aa24.55■■□□□ 1.52
CHMP3-203ENST00000409225 SPON1Q9HCB6 807 aa24.55■■□□□ 1.52
CHMP3-203ENST00000409225 CAMTA1Q9Y6Y1 1673 aa24.54■■□□□ 1.52
CHMP3-203ENST00000409225 ARHGEF28Q8N1W1 1705 aaKnown RBP24.54■■□□□ 1.52
CHMP3-203ENST00000409225 NRKQ7Z2Y5 1582 aa24.54■■□□□ 1.52
CHMP3-203ENST00000409225 CDK19Q9BWU1 502 aa24.53■■□□□ 1.52
CHMP3-203ENST00000409225 ACEP12821 1306 aa24.53■■□□□ 1.52
CHMP3-203ENST00000409225 KCNQ2O43526 872 aa24.52■■□□□ 1.52
CHMP3-203ENST00000409225 DCAF8L1A6NGE4 600 aa24.51■■□□□ 1.51
CHMP3-203ENST00000409225 POLR3AO14802 1390 aaPredicted RBP24.51■■□□□ 1.51
CHMP3-203ENST00000409225 ABTB2Q8N961 1025 aa24.5■■□□□ 1.51
CHMP3-203ENST00000409225 LMO7Q8WWI1 1683 aa24.5■■□□□ 1.51
CHMP3-203ENST00000409225 CPDO75976 1380 aa24.48■■□□□ 1.51
CHMP3-203ENST00000409225 TOPAZ1Q8N9V7 1692 aa24.48■■□□□ 1.51
CHMP3-203ENST00000409225 NINLQ9Y2I6 1382 aa24.48■■□□□ 1.51
CHMP3-203ENST00000409225 THRAP3Q9Y2W1 955 aaKnown RBP24.48■■□□□ 1.51
CHMP3-203ENST00000409225 RAB3GAP2Q9H2M9 1393 aa24.46■■□□□ 1.51
CHMP3-203ENST00000409225 USP19O94966 1318 aa24.46■■□□□ 1.51
CHMP3-203ENST00000409225 CCDC61Q9Y6R9 512 aa24.46■■□□□ 1.51
CHMP3-203ENST00000409225 PARP4Q9UKK3 1724 aaKnown RBP24.45■■□□□ 1.5
CHMP3-203ENST00000409225 PLEKHG3A1L390 1219 aa24.44■■□□□ 1.5
CHMP3-203ENST00000409225 STAC3Q96MF2 364 aa24.44■■□□□ 1.5
CHMP3-203ENST00000409225 COL5A2P05997 1499 aaPredicted RBP24.44■■□□□ 1.5
CHMP3-203ENST00000409225 ZBTB7CA1YPR0 619 aa24.43■■□□□ 1.5
CHMP3-203ENST00000409225 GCP02774 474 aa24.43■■□□□ 1.5
CHMP3-203ENST00000409225 OVOS2A0A0G2JMS6 1433 aa24.43■■□□□ 1.5
CHMP3-203ENST00000409225 OVOS2A0A0J9YW53 1432 aa24.43■■□□□ 1.5
CHMP3-203ENST00000409225 OVOS2Q6IE36 1432 aa24.43■■□□□ 1.5
CHMP3-203ENST00000409225 C11orf95C9JLR9 678 aaPredicted RBP24.42■■□□□ 1.5
CHMP3-203ENST00000409225 NLRP13Q86W25 1043 aa24.42■■□□□ 1.5
CHMP3-203ENST00000409225 ANO8Q9HCE9 1232 aaPredicted RBP24.41■■□□□ 1.5
CHMP3-203ENST00000409225 CRB1P82279 1406 aa24.41■■□□□ 1.5
CHMP3-203ENST00000409225 PEAK1Q9H792 1746 aa24.4■■□□□ 1.5
CHMP3-203ENST00000409225 PLSCR1O15162 318 aa24.38■■□□□ 1.49
CHMP3-203ENST00000409225 RGPD3A6NKT7 1758 aaPredicted RBP24.37■■□□□ 1.49
CHMP3-203ENST00000409225 RGPD4Q7Z3J3 1758 aa24.37■■□□□ 1.49
CHMP3-203ENST00000409225 LRRC37A3O60309 1634 aa24.36■■□□□ 1.49
CHMP3-203ENST00000409225 DDB1Q16531 1140 aa24.36■■□□□ 1.49
CHMP3-203ENST00000409225 PTF1AQ7RTS3 328 aa24.36■■□□□ 1.49
CHMP3-203ENST00000409225 BCL11BQ9C0K0 894 aaPredicted RBP24.36■■□□□ 1.49
CHMP3-203ENST00000409225 PDGFDQ9GZP0 370 aaPredicted RBP24.36■■□□□ 1.49
CHMP3-203ENST00000409225 CASZ1Q86V15 1759 aa24.36■■□□□ 1.49
CHMP3-203ENST00000409225 PPIP5K1Q6PFW1 1433 aa24.35■■□□□ 1.49
CHMP3-203ENST00000409225 SBF2Q86WG5 1849 aa24.35■■□□□ 1.49
CHMP3-203ENST00000409225 ZBTB7AO95365 584 aa24.35■■□□□ 1.49
CHMP3-203ENST00000409225 SRPK2P78362 688 aaKnown RBP24.35■■□□□ 1.49
CHMP3-203ENST00000409225 TOM1L2Q6ZVM7 507 aa24.33■■□□□ 1.49
CHMP3-203ENST00000409225 AATKQ6ZMQ8 1374 aa24.31■■□□□ 1.48
CHMP3-203ENST00000409225 NLRP6P59044 892 aa24.31■■□□□ 1.48
CHMP3-203ENST00000409225 CABP2Q9NPB3 220 aa24.31■■□□□ 1.48
CHMP3-203ENST00000409225 PROM2Q8N271 834 aa24.3■■□□□ 1.48
CHMP3-203ENST00000409225 ATF5Q9Y2D1 282 aaPredicted RBP24.3■■□□□ 1.48
CHMP3-203ENST00000409225 MYOM1P52179 1685 aa24.3■■□□□ 1.48
CHMP3-203ENST00000409225 MARCH10Q8NA82 808 aaPredicted RBP24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms