RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NBPF8Q3BBV2 869 aa17.71■□□□□ 0.43
SMARCB1-203ENST00000407082 TNS3Q68CZ2 1445 aa17.71■□□□□ 0.43
SMARCB1-203ENST00000407082 EZH2Q15910 746 aaKnown RBP17.7■□□□□ 0.42
SMARCB1-203ENST00000407082 PLCH1Q4KWH8 1693 aa17.69■□□□□ 0.42
SMARCB1-203ENST00000407082 SAFB2Q14151 953 aaKnown RBP eCLIP17.69■□□□□ 0.42
SMARCB1-203ENST00000407082 CCDC7Q96M83 1385 aa17.68■□□□□ 0.42
SMARCB1-203ENST00000407082 NBPF1Q3BBV0 1214 aa17.68■□□□□ 0.42
SMARCB1-203ENST00000407082 PMFBP1Q8TBY8 1022 aa17.68■□□□□ 0.42
SMARCB1-203ENST00000407082 WASHC2AQ641Q2 1341 aa17.68■□□□□ 0.42
SMARCB1-203ENST00000407082 KIF1AQ12756 1690 aa17.67■□□□□ 0.42
SMARCB1-203ENST00000407082 ABCC11Q96J66 1382 aa17.67■□□□□ 0.42
SMARCB1-203ENST00000407082 NWD2Q9ULI1 1742 aa17.67■□□□□ 0.42
SMARCB1-203ENST00000407082 ARHGEF10O15013 1369 aa17.66■□□□□ 0.42
SMARCB1-203ENST00000407082 FMN2Q9NZ56 1722 aa17.66■□□□□ 0.42
SMARCB1-203ENST00000407082 TRIM37O94972 964 aa17.65■□□□□ 0.42
SMARCB1-203ENST00000407082 SBNO1A3KN83 1393 aa17.65■□□□□ 0.42
SMARCB1-203ENST00000407082 APBA3O96018 575 aa17.64■□□□□ 0.41
SMARCB1-203ENST00000407082 ROCK2O75116 1388 aaKnown RBP17.64■□□□□ 0.41
SMARCB1-203ENST00000407082 KIAA1210Q9ULL0 1709 aa17.64■□□□□ 0.41
SMARCB1-203ENST00000407082 TECPR2O15040 1411 aa17.64■□□□□ 0.41
SMARCB1-203ENST00000407082 YTHDC2Q9H6S0 1430 aaKnown RBP17.64■□□□□ 0.41
SMARCB1-203ENST00000407082 RGPD8O14715 1765 aaPredicted RBP17.63■□□□□ 0.41
SMARCB1-203ENST00000407082 DCAF8L1A6NGE4 600 aa17.63■□□□□ 0.41
SMARCB1-203ENST00000407082 PPP1R1BQ9UD71 204 aaPredicted RBP17.63■□□□□ 0.41
SMARCB1-203ENST00000407082 RGPD1P0DJD0 1748 aa17.62■□□□□ 0.41
SMARCB1-203ENST00000407082 TRAK1Q9UPV9 953 aa17.62■□□□□ 0.41
SMARCB1-203ENST00000407082 ADGRB1O14514 1584 aa17.62■□□□□ 0.41
SMARCB1-203ENST00000407082 TRPM1Q7Z4N2 1603 aa17.61■□□□□ 0.41
SMARCB1-203ENST00000407082 CAMKK2Q96RR4 588 aa17.61■□□□□ 0.41
SMARCB1-203ENST00000407082 SPATA31A5Q5VU36 1347 aa17.61■□□□□ 0.41
SMARCB1-203ENST00000407082 SPATA31A7Q8IWB4 1347 aa17.61■□□□□ 0.41
SMARCB1-203ENST00000407082 PAK3O75914 559 aaPredicted RBP17.6■□□□□ 0.41
SMARCB1-203ENST00000407082 PRAM1Q96QH2 718 aa17.6■□□□□ 0.41
SMARCB1-203ENST00000407082 CARD11Q9BXL7 1154 aa17.6■□□□□ 0.41
SMARCB1-203ENST00000407082 POGKQ9P215 609 aa17.6■□□□□ 0.41
SMARCB1-203ENST00000407082 USP47Q96K76 1375 aa17.59■□□□□ 0.41
SMARCB1-203ENST00000407082 NBPF14Q5TI25 921 aa17.59■□□□□ 0.41
SMARCB1-203ENST00000407082 FAM196AQ6ZSG2 479 aa17.59■□□□□ 0.41
SMARCB1-203ENST00000407082 PRDM11Q9NQV5 511 aa17.59■□□□□ 0.41
SMARCB1-203ENST00000407082 SIRT1Q96EB6 747 aa17.58■□□□□ 0.4
SMARCB1-203ENST00000407082 STRN4Q9NRL3 753 aa17.58■□□□□ 0.4
SMARCB1-203ENST00000407082 USP35Q9P2H5 1018 aa17.58■□□□□ 0.4
SMARCB1-203ENST00000407082 ABCA3Q99758 1704 aa17.58■□□□□ 0.4
SMARCB1-203ENST00000407082 GPRASP1Q5JY77 1395 aa17.57■□□□□ 0.4
SMARCB1-203ENST00000407082 DISP2A7MBM2 1401 aa17.55■□□□□ 0.4
SMARCB1-203ENST00000407082 NRAPQ86VF7 1730 aa17.55■□□□□ 0.4
SMARCB1-203ENST00000407082 KIF7Q2M1P5 1343 aa17.55■□□□□ 0.4
SMARCB1-203ENST00000407082 NEFLP07196 543 aa17.55■□□□□ 0.4
SMARCB1-203ENST00000407082 PDE3BQ13370 1112 aa17.55■□□□□ 0.4
SMARCB1-203ENST00000407082 KNDC1Q76NI1 1749 aa17.55■□□□□ 0.4
SMARCB1-203ENST00000407082 COL14A1Q05707 1796 aaKnown RBP17.54■□□□□ 0.4
SMARCB1-203ENST00000407082 CHRNA2Q15822 529 aa17.54■□□□□ 0.4
SMARCB1-203ENST00000407082 SPON1Q9HCB6 807 aa17.54■□□□□ 0.4
SMARCB1-203ENST00000407082 EVA1CP58658 441 aa17.53■□□□□ 0.4
SMARCB1-203ENST00000407082 NGDNQ8NEJ9 315 aaKnown RBP17.53■□□□□ 0.4
SMARCB1-203ENST00000407082 TNS1Q9HBL0 1735 aaKnown RBP17.52■□□□□ 0.4
SMARCB1-203ENST00000407082 DLC1Q96QB1 1528 aa17.52■□□□□ 0.4
SMARCB1-203ENST00000407082 SPATA31A1Q5TZJ5 1347 aa17.52■□□□□ 0.4
SMARCB1-203ENST00000407082 PRKRIP1Q9H875 184 aaPredicted RBP17.52■□□□□ 0.4
SMARCB1-203ENST00000407082 ADGRB2O60241 1585 aa17.51■□□□□ 0.39
SMARCB1-203ENST00000407082 MINK1Q8N4C8 1332 aaPredicted RBP17.5■□□□□ 0.39
SMARCB1-203ENST00000407082 KCNQ2O43526 872 aa17.5■□□□□ 0.39
SMARCB1-203ENST00000407082 ZC3H6P61129 1189 aaKnown RBP17.5■□□□□ 0.39
SMARCB1-203ENST00000407082 EIF3AQ14152 1382 aaKnown RBP17.5■□□□□ 0.39
SMARCB1-203ENST00000407082 KTN1Q86UP2 1357 aaKnown RBP17.5■□□□□ 0.39
SMARCB1-203ENST00000407082 PARD3Q8TEW0 1356 aa17.5■□□□□ 0.39
SMARCB1-203ENST00000407082 C11orf95C9JLR9 678 aaPredicted RBP17.49■□□□□ 0.39
SMARCB1-203ENST00000407082 NUTM2GQ5VZR2 741 aa17.49■□□□□ 0.39
SMARCB1-203ENST00000407082 SUPT16HQ9Y5B9 1047 aaKnown RBP17.49■□□□□ 0.39
SMARCB1-203ENST00000407082 CENPJQ9HC77 1338 aaPredicted RBP17.48■□□□□ 0.39
SMARCB1-203ENST00000407082 ANKARQ7Z5J8 1434 aa17.48■□□□□ 0.39
SMARCB1-203ENST00000407082 ARHGEF28Q8N1W1 1705 aaKnown RBP17.48■□□□□ 0.39
SMARCB1-203ENST00000407082 KIAA0232Q92628 1395 aa17.48■□□□□ 0.39
SMARCB1-203ENST00000407082 THSD7AQ9UPZ6 1657 aa17.48■□□□□ 0.39
SMARCB1-203ENST00000407082 PRR36Q9H6K5 1346 aa17.46■□□□□ 0.38
SMARCB1-203ENST00000407082 TRPM3Q9HCF6 1732 aaPredicted RBP17.45■□□□□ 0.38
SMARCB1-203ENST00000407082 ST20-MTHFSA0A0A6YYL1 179 aa17.45■□□□□ 0.38
SMARCB1-203ENST00000407082 ALS2Q96Q42 1657 aa17.44■□□□□ 0.38
SMARCB1-203ENST00000407082 HNRNPUQ00839 825 aaKnown RBP eCLIP17.43■□□□□ 0.38
SMARCB1-203ENST00000407082 MRS2Q9HD23 443 aa17.43■□□□□ 0.38
SMARCB1-203ENST00000407082 NINLQ9Y2I6 1382 aa17.42■□□□□ 0.38
SMARCB1-203ENST00000407082 WASLO00401 505 aaPredicted RBP17.42■□□□□ 0.38
SMARCB1-203ENST00000407082 LARP1Q6PKG0 1096 aaKnown RBP17.42■□□□□ 0.38
SMARCB1-203ENST00000407082 SLC24A1O60721 1099 aa17.41■□□□□ 0.38
SMARCB1-203ENST00000407082 BARGINQ6ZT62 677 aa17.41■□□□□ 0.38
SMARCB1-203ENST00000407082 TCP11L2Q8N4U5 519 aa17.41■□□□□ 0.38
SMARCB1-203ENST00000407082 SENP3-EIF4A1A0A087X0R7 540 aa17.4■□□□□ 0.38
SMARCB1-203ENST00000407082 ZNF784Q8NCA9 323 aaPredicted RBP17.4■□□□□ 0.38
SMARCB1-203ENST00000407082 NUP188Q5SRE5 1749 aa17.4■□□□□ 0.38
SMARCB1-203ENST00000407082 QRICH2Q9H0J4 1663 aa17.39■□□□□ 0.37
SMARCB1-203ENST00000407082 CDK19Q9BWU1 502 aa17.39■□□□□ 0.37
SMARCB1-203ENST00000407082 RREB1Q92766 1687 aa17.39■□□□□ 0.37
SMARCB1-203ENST00000407082 ZBTB7CA1YPR0 619 aa17.38■□□□□ 0.37
SMARCB1-203ENST00000407082 ZBTB7AO95365 584 aa17.38■□□□□ 0.37
SMARCB1-203ENST00000407082 RALBP1Q15311 655 aa17.38■□□□□ 0.37
SMARCB1-203ENST00000407082 ERICH6BQ5W0A0 696 aa17.38■□□□□ 0.37
SMARCB1-203ENST00000407082 TESK2Q96S53 571 aa17.38■□□□□ 0.37
SMARCB1-203ENST00000407082 EVC2Q86UK5 1308 aa17.38■□□□□ 0.37
SMARCB1-203ENST00000407082 SSH2Q76I76 1423 aa17.38■□□□□ 0.37
SMARCB1-203ENST00000407082 CAMTA1Q9Y6Y1 1673 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms