RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 SEMA3FQ13275 785 aa8.35□□□□□ -1.07
HMGB3P18-201ENST00000406327 PPP1R12CQ9BZL4 782 aa8.35□□□□□ -1.07
HMGB3P18-201ENST00000406327 PDZRN3Q9UPQ7 1066 aa8.35□□□□□ -1.07
HMGB3P18-201ENST00000406327 USTQ9Y2C2 406 aa8.35□□□□□ -1.07
HMGB3P18-201ENST00000406327 SALL2Q9Y467 1007 aaPredicted RBP8.35□□□□□ -1.07
HMGB3P18-201ENST00000406327 GPR37L1O60883 481 aa8.34□□□□□ -1.07
HMGB3P18-201ENST00000406327 CSB-PGBD3P0DP91 1061 aa8.34□□□□□ -1.07
HMGB3P18-201ENST00000406327 ZNF592Q92610 1267 aa8.34□□□□□ -1.07
HMGB3P18-201ENST00000406327 ALG2Q9H553 416 aa8.34□□□□□ -1.07
HMGB3P18-201ENST00000406327 IL21Q9HBE4 155 aa8.34□□□□□ -1.07
HMGB3P18-201ENST00000406327 NR6A1Q15406 480 aa8.33□□□□□ -1.08
HMGB3P18-201ENST00000406327 AEBP1Q8IUX7 1158 aa8.33□□□□□ -1.08
HMGB3P18-201ENST00000406327 ADAMTS19Q8TE59 1207 aa8.33□□□□□ -1.08
HMGB3P18-201ENST00000406327 SYMPKQ92797 1274 aaKnown RBP8.33□□□□□ -1.08
HMGB3P18-201ENST00000406327 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.33□□□□□ -1.08
HMGB3P18-201ENST00000406327 SLC27A5Q9Y2P5 690 aa8.33□□□□□ -1.08
HMGB3P18-201ENST00000406327 ZC3H4Q9UPT8 1303 aaKnown RBP8.32□□□□□ -1.08
HMGB3P18-201ENST00000406327 LYPD8Q6UX82 237 aa8.32□□□□□ -1.08
HMGB3P18-201ENST00000406327 MTRQ99707 1265 aa8.32□□□□□ -1.08
HMGB3P18-201ENST00000406327 USB1Q9BQ65 265 aaKnown RBP8.32□□□□□ -1.08
HMGB3P18-201ENST00000406327 NR1I2O75469 434 aa8.31□□□□□ -1.08
HMGB3P18-201ENST00000406327 FMNL1O95466 1100 aaPredicted RBP8.31□□□□□ -1.08
HMGB3P18-201ENST00000406327 PUS10Q3MIT2 529 aaKnown RBP8.31□□□□□ -1.08
HMGB3P18-201ENST00000406327 CFAP70Q5T0N1 1121 aa8.31□□□□□ -1.08
HMGB3P18-201ENST00000406327 PALM3A6NDB9 673 aaPredicted RBP8.3□□□□□ -1.08
HMGB3P18-201ENST00000406327 NR1H3Q13133 447 aa8.3□□□□□ -1.08
HMGB3P18-201ENST00000406327 EPS8L1Q8TE68 723 aa8.3□□□□□ -1.08
HMGB3P18-201ENST00000406327 PER1O15534 1290 aaPredicted RBP8.29□□□□□ -1.08
HMGB3P18-201ENST00000406327 RFX1P22670 979 aa8.29□□□□□ -1.08
HMGB3P18-201ENST00000406327 PCDHB3Q9Y5E6 796 aa8.29□□□□□ -1.08
HMGB3P18-201ENST00000406327 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.28□□□□□ -1.08
HMGB3P18-201ENST00000406327 LMOD1P29536 600 aaPredicted RBP8.28□□□□□ -1.08
HMGB3P18-201ENST00000406327 PTPRNQ16849 979 aa8.28□□□□□ -1.08
HMGB3P18-201ENST00000406327 FKBPLQ9UIM3 349 aa8.28□□□□□ -1.08
HMGB3P18-201ENST00000406327 ZBBXA8MT70 800 aa8.27□□□□□ -1.09
HMGB3P18-201ENST00000406327 BRD1O95696 1058 aa8.27□□□□□ -1.09
HMGB3P18-201ENST00000406327 JUNDP17535 347 aa8.27□□□□□ -1.09
HMGB3P18-201ENST00000406327 KCNA1Q09470 495 aa8.27□□□□□ -1.09
HMGB3P18-201ENST00000406327 BRICD5Q6PL45 260 aa8.27□□□□□ -1.09
HMGB3P18-201ENST00000406327 ARMC2Q8NEN0 867 aa8.27□□□□□ -1.09
HMGB3P18-201ENST00000406327 TFIP11Q9UBB9 837 aaKnown RBP8.27□□□□□ -1.09
HMGB3P18-201ENST00000406327 GGCXP38435 758 aa8.26□□□□□ -1.09
HMGB3P18-201ENST00000406327 RNF19BQ6ZMZ0 732 aa8.26□□□□□ -1.09
HMGB3P18-201ENST00000406327 NFATC2IPQ8NCF5 419 aa8.26□□□□□ -1.09
HMGB3P18-201ENST00000406327 ZNF516Q92618 1163 aa8.26□□□□□ -1.09
HMGB3P18-201ENST00000406327 GPKOWQ92917 476 aaPredicted RBP eCLIP8.26□□□□□ -1.09
HMGB3P18-201ENST00000406327 ATP9BO43861 1147 aa8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 MCCD1P59942 119 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 BLOC1S3Q6QNY0 202 aa8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 NPM2Q86SE8 214 aaKnown RBP8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 SCUBE3Q8IX30 993 aa8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 UCN2Q96RP3 112 aa8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 GPSM3Q9Y4H4 160 aa8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 MAFBQ9Y5Q3 323 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P18-201ENST00000406327 ATG7O95352 703 aa8.24□□□□□ -1.09
HMGB3P18-201ENST00000406327 F12P00748 615 aaPredicted RBP8.24□□□□□ -1.09
HMGB3P18-201ENST00000406327 SRPK2P78362 688 aaKnown RBP8.24□□□□□ -1.09
HMGB3P18-201ENST00000406327 MSS51Q4VC12 460 aa8.24□□□□□ -1.09
HMGB3P18-201ENST00000406327 TMCO4Q5TGY1 634 aa8.24□□□□□ -1.09
HMGB3P18-201ENST00000406327 B4GALNT3Q6L9W6 998 aa8.24□□□□□ -1.09
HMGB3P18-201ENST00000406327 APLP1P51693 650 aa8.23□□□□□ -1.09
HMGB3P18-201ENST00000406327 FBXO45P0C2W1 286 aa8.22□□□□□ -1.09
HMGB3P18-201ENST00000406327 CCNYL3P0C7X3 344 aa8.22□□□□□ -1.09
HMGB3P18-201ENST00000406327 CTHP32929 405 aa8.22□□□□□ -1.09
HMGB3P18-201ENST00000406327 PTK2Q05397 1052 aa8.22□□□□□ -1.09
HMGB3P18-201ENST00000406327 NBPF14Q5TI25 921 aa8.22□□□□□ -1.09
HMGB3P18-201ENST00000406327 THAP11Q96EK4 314 aa8.22□□□□□ -1.09
HMGB3P18-201ENST00000406327 NKX2-3Q8TAU0 364 aa8.21□□□□□ -1.1
HMGB3P18-201ENST00000406327 VRTNQ9H8Y1 702 aa8.21□□□□□ -1.1
HMGB3P18-201ENST00000406327 PKDCCQ504Y2 493 aa8.2□□□□□ -1.1
HMGB3P18-201ENST00000406327 TBC1D9Q6ZT07 1266 aa8.2□□□□□ -1.1
HMGB3P18-201ENST00000406327 DXOO77932 396 aaKnown RBP8.19□□□□□ -1.1
HMGB3P18-201ENST00000406327 ELOAQ14241 798 aaKnown RBP8.19□□□□□ -1.1
HMGB3P18-201ENST00000406327 PDXDC2PQ6P474 469 aa8.19□□□□□ -1.1
HMGB3P18-201ENST00000406327 SPSB2Q99619 263 aa8.19□□□□□ -1.1
HMGB3P18-201ENST00000406327 NUDT12Q9BQG2 462 aa8.19□□□□□ -1.1
HMGB3P18-201ENST00000406327 GZF1Q9H116 711 aaPredicted RBP8.19□□□□□ -1.1
HMGB3P18-201ENST00000406327 MAP10Q9P2G4 905 aa8.19□□□□□ -1.1
HMGB3P18-201ENST00000406327 LZTS3O60299 673 aaPredicted RBP8.18□□□□□ -1.1
HMGB3P18-201ENST00000406327 PLEKHM2Q8IWE5 1019 aa8.18□□□□□ -1.1
HMGB3P18-201ENST00000406327 EVA1BQ9NVM1 165 aa8.18□□□□□ -1.1
HMGB3P18-201ENST00000406327 DGAT1O75907 488 aa8.17□□□□□ -1.1
HMGB3P18-201ENST00000406327 MMP16P51512 607 aa8.17□□□□□ -1.1
HMGB3P18-201ENST00000406327 MYT1Q01538 1121 aa8.17□□□□□ -1.1
HMGB3P18-201ENST00000406327 KCNH2Q12809 1159 aa8.17□□□□□ -1.1
HMGB3P18-201ENST00000406327 SLFNL1Q499Z3 407 aa8.17□□□□□ -1.1
HMGB3P18-201ENST00000406327 TRIM67Q6ZTA4 783 aa8.17□□□□□ -1.1
HMGB3P18-201ENST00000406327 USP17L3A6NCW0 530 aa8.16□□□□□ -1.1
HMGB3P18-201ENST00000406327 USP17L4A6NCW7 530 aa8.16□□□□□ -1.1
HMGB3P18-201ENST00000406327 SKIP12755 728 aa8.16□□□□□ -1.1
HMGB3P18-201ENST00000406327 COPS2P61201 443 aa8.16□□□□□ -1.1
HMGB3P18-201ENST00000406327 USP17L2Q6R6M4 530 aa8.16□□□□□ -1.1
HMGB3P18-201ENST00000406327 USP17L1Q7RTZ2 530 aa8.16□□□□□ -1.1
HMGB3P18-201ENST00000406327 USP17L5A8MUK1 530 aa8.15□□□□□ -1.1
HMGB3P18-201ENST00000406327 SLC19A1P41440 591 aa8.14□□□□□ -1.11
HMGB3P18-201ENST00000406327 CDCA8Q53HL2 280 aa8.14□□□□□ -1.11
HMGB3P18-201ENST00000406327 KANK4Q5T7N3 995 aaPredicted RBP8.14□□□□□ -1.11
HMGB3P18-201ENST00000406327 TMEM88BA6NKF7 163 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 FAM196BA6NMK8 535 aa8.13□□□□□ -1.11
HMGB3P18-201ENST00000406327 POTECB2RU33 542 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms