RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SF3B2Q13435 895 aaKnown RBP41.51■■■■■ 4.24
HMGB1-205ENST00000399494 NUDT16Q96DE0 195 aaKnown RBP41.51■■■■■ 4.24
HMGB1-205ENST00000399494 NRAPQ86VF7 1730 aa41.5■■■■■ 4.23
HMGB1-205ENST00000399494 FAM98CQ17RN3 349 aaKnown RBP41.49■■■■■ 4.23
HMGB1-205ENST00000399494 COL14A1Q05707 1796 aaKnown RBP41.48■■■■■ 4.23
HMGB1-205ENST00000399494 ARHGEF28Q8N1W1 1705 aaKnown RBP41.48■■■■■ 4.23
HMGB1-205ENST00000399494 A0A0G2JS52 829 aa41.44■■■■■ 4.22
HMGB1-205ENST00000399494 MYT1Q01538 1121 aa41.44■■■■■ 4.22
HMGB1-205ENST00000399494 CDK19Q9BWU1 502 aa41.44■■■■■ 4.22
HMGB1-205ENST00000399494 ATP7BP35670 1465 aa41.44■■■■■ 4.22
HMGB1-205ENST00000399494 CRYBG1Q9Y4K1 1723 aa41.43■■■■■ 4.22
HMGB1-205ENST00000399494 SPATA31A5Q5VU36 1347 aa41.41■■■■■ 4.22
HMGB1-205ENST00000399494 SPATA31A7Q8IWB4 1347 aa41.41■■■■■ 4.22
HMGB1-205ENST00000399494 PRDM11Q9NQV5 511 aa41.39■■■■■ 4.22
HMGB1-205ENST00000399494 ITSN1Q15811 1721 aa41.38■■■■■ 4.21
HMGB1-205ENST00000399494 NBPF8Q3BBV2 869 aa41.33■■■■■ 4.21
HMGB1-205ENST00000399494 CCDC61Q9Y6R9 512 aa41.33■■■■■ 4.21
HMGB1-205ENST00000399494 POLR3AO14802 1390 aaPredicted RBP41.33■■■■■ 4.21
HMGB1-205ENST00000399494 NBPF1Q3BBV0 1214 aa41.32■■■■■ 4.21
HMGB1-205ENST00000399494 ACEP12821 1306 aa41.32■■■■■ 4.21
HMGB1-205ENST00000399494 KIAA0232Q92628 1395 aa41.32■■■■■ 4.21
HMGB1-205ENST00000399494 PLEKHG3A1L390 1219 aa41.31■■■■■ 4.2
HMGB1-205ENST00000399494 TRIM26Q12899 539 aaPredicted RBP41.31■■■■■ 4.2
HMGB1-205ENST00000399494 BAG6P46379 1132 aa41.3■■■■■ 4.2
HMGB1-205ENST00000399494 NUTM2GQ5VZR2 741 aa41.3■■■■■ 4.2
HMGB1-205ENST00000399494 KIAA1210Q9ULL0 1709 aa41.3■■■■■ 4.2
HMGB1-205ENST00000399494 CHRNA2Q15822 529 aa41.29■■■■■ 4.2
HMGB1-205ENST00000399494 FAM182BQ5T319 152 aa41.29■■■■■ 4.2
HMGB1-205ENST00000399494 ZC3H6P61129 1189 aaKnown RBP41.27■■■■■ 4.2
HMGB1-205ENST00000399494 SPATA31A1Q5TZJ5 1347 aa41.26■■■■■ 4.2
HMGB1-205ENST00000399494 TOPAZ1Q8N9V7 1692 aa41.23■■■■■ 4.19
HMGB1-205ENST00000399494 THSD7AQ9UPZ6 1657 aa41.23■■■■■ 4.19
HMGB1-205ENST00000399494 PHRF1Q9P1Y6 1649 aaKnown RBP41.22■■■■■ 4.19
HMGB1-205ENST00000399494 STRN4Q9NRL3 753 aa41.21■■■■■ 4.19
HMGB1-205ENST00000399494 EN1Q05925 392 aaPredicted RBP41.19■■■■■ 4.18
HMGB1-205ENST00000399494 ABTB2Q8N961 1025 aa41.19■■■■■ 4.18
HMGB1-205ENST00000399494 PSDA5PKW4 1024 aaPredicted RBP41.14■■■■■ 4.18
HMGB1-205ENST00000399494 SRPK2P78362 688 aaKnown RBP41.14■■■■■ 4.18
HMGB1-205ENST00000399494 CENPJQ9HC77 1338 aaPredicted RBP41.14■■■■■ 4.18
HMGB1-205ENST00000399494 RGPD1P0DJD0 1748 aa41.13■■■■■ 4.18
HMGB1-205ENST00000399494 EVA1CP58658 441 aa41.13■■■■■ 4.17
HMGB1-205ENST00000399494 CABP2Q9NPB3 220 aa41.11■■■■■ 4.17
HMGB1-205ENST00000399494 USP19O94966 1318 aa41.11■■■■■ 4.17
HMGB1-205ENST00000399494 PPIP5K1Q6PFW1 1433 aa41.1■■■■■ 4.17
HMGB1-205ENST00000399494 FAM196AQ6ZSG2 479 aa41.09■■■■■ 4.17
HMGB1-205ENST00000399494 BARGINQ6ZT62 677 aa41.09■■■■■ 4.17
HMGB1-205ENST00000399494 USP35Q9P2H5 1018 aa41.09■■■■■ 4.17
HMGB1-205ENST00000399494 DISP2A7MBM2 1401 aa41.09■■■■■ 4.17
HMGB1-205ENST00000399494 NLRP13Q86W25 1043 aa41.08■■■■■ 4.17
HMGB1-205ENST00000399494 CPDO75976 1380 aa41.08■■■■■ 4.17
HMGB1-205ENST00000399494 SSH2Q76I76 1423 aa41.08■■■■■ 4.17
HMGB1-205ENST00000399494 CAMTA1Q9Y6Y1 1673 aa41.07■■■■■ 4.17
HMGB1-205ENST00000399494 NRKQ7Z2Y5 1582 aa41.07■■■■■ 4.16
HMGB1-205ENST00000399494 GCP02774 474 aa41.06■■■■■ 4.16
HMGB1-205ENST00000399494 LARP1Q6PKG0 1096 aaKnown RBP41.06■■■■■ 4.16
HMGB1-205ENST00000399494 LRP5O75197 1615 aa41.04■■■■■ 4.16
HMGB1-205ENST00000399494 TRIM37O94972 964 aa41.04■■■■■ 4.16
HMGB1-205ENST00000399494 EZH2Q15910 746 aaKnown RBP41.03■■■■■ 4.16
HMGB1-205ENST00000399494 TNS1Q9HBL0 1735 aaKnown RBP41.03■■■■■ 4.16
HMGB1-205ENST00000399494 L3MBTL2Q969R5 705 aa41.02■■■■■ 4.16
HMGB1-205ENST00000399494 BRD4O60885 1362 aaPredicted RBP41.01■■■■■ 4.16
HMGB1-205ENST00000399494 CAMKK2Q96RR4 588 aa41.01■■■■■ 4.16
HMGB1-205ENST00000399494 CABP1Q9NZU7 370 aa41.01■■■■■ 4.16
HMGB1-205ENST00000399494 LMO7Q8WWI1 1683 aa41.01■■■■■ 4.15
HMGB1-205ENST00000399494 TCP11L2Q8N4U5 519 aa41■■■■■ 4.15
HMGB1-205ENST00000399494 PDE3BQ13370 1112 aa40.99■■■■■ 4.15
HMGB1-205ENST00000399494 R3HDM1Q15032 1099 aaKnown RBP40.97■■■■■ 4.15
HMGB1-205ENST00000399494 THRAP3Q9Y2W1 955 aaKnown RBP40.95■■■■■ 4.15
HMGB1-205ENST00000399494 QRICH2Q9H0J4 1663 aa40.94■■■■■ 4.15
HMGB1-205ENST00000399494 APBA3O96018 575 aa40.94■■■■■ 4.14
HMGB1-205ENST00000399494 NLRP6P59044 892 aa40.92■■■■■ 4.14
HMGB1-205ENST00000399494 USP6P35125 1406 aa40.92■■■■■ 4.14
HMGB1-205ENST00000399494 SIN3AQ96ST3 1273 aa40.91■■■■■ 4.14
HMGB1-205ENST00000399494 COL5A2P05997 1499 aaPredicted RBP40.89■■■■■ 4.14
HMGB1-205ENST00000399494 EVC2Q86UK5 1308 aa40.87■■■■■ 4.13
HMGB1-205ENST00000399494 PARD3Q8TEW0 1356 aa40.86■■■■■ 4.13
HMGB1-205ENST00000399494 AATKQ6ZMQ8 1374 aa40.84■■■■■ 4.13
HMGB1-205ENST00000399494 ZBTB7CA1YPR0 619 aa40.83■■■■■ 4.13
HMGB1-205ENST00000399494 CRB1P82279 1406 aa40.82■■■■■ 4.12
HMGB1-205ENST00000399494 SLIT3O75094 1523 aa40.82■■■■■ 4.12
HMGB1-205ENST00000399494 TRPM1Q7Z4N2 1603 aa40.81■■■■■ 4.12
HMGB1-205ENST00000399494 NEUROD1Q13562 356 aa40.78■■■■■ 4.12
HMGB1-205ENST00000399494 ZNF692Q9BU19 519 aaPredicted RBP40.78■■■■■ 4.12
HMGB1-205ENST00000399494 PARP4Q9UKK3 1724 aaKnown RBP40.77■■■■■ 4.12
HMGB1-205ENST00000399494 AXIN2Q9Y2T1 843 aa40.75■■■■■ 4.11
HMGB1-205ENST00000399494 ROCK2O75116 1388 aaKnown RBP40.74■■■■■ 4.11
HMGB1-205ENST00000399494 TTC21BQ7Z4L5 1316 aa40.74■■■■■ 4.11
HMGB1-205ENST00000399494 C11orf95C9JLR9 678 aaPredicted RBP40.74■■■■■ 4.11
HMGB1-205ENST00000399494 PIK3C2AO00443 1686 aa40.74■■■■■ 4.11
HMGB1-205ENST00000399494 COL18A1P39060 1754 aa40.72■■■■■ 4.11
HMGB1-205ENST00000399494 RREB1Q92766 1687 aa40.72■■■■■ 4.11
HMGB1-205ENST00000399494 TOM1L2Q6ZVM7 507 aa40.71■■■■■ 4.11
HMGB1-205ENST00000399494 ARHGEF25Q86VW2 580 aa40.7■■■■■ 4.11
HMGB1-205ENST00000399494 NBPF14Q5TI25 921 aa40.69■■■■■ 4.1
HMGB1-205ENST00000399494 PCGF6Q9BYE7 350 aa40.69■■■■■ 4.1
HMGB1-205ENST00000399494 DDB1Q16531 1140 aa40.67■■■■■ 4.1
HMGB1-205ENST00000399494 KCNH5Q8NCM2 988 aa40.67■■■■■ 4.1
HMGB1-205ENST00000399494 WDR17Q8IZU2 1322 aa40.67■■■■■ 4.1
HMGB1-205ENST00000399494 NUP188Q5SRE5 1749 aa40.66■■■■■ 4.1
HMGB1-205ENST00000399494 OVOS2A0A0G2JMS6 1433 aa40.65■■■■■ 4.1
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms