RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 LRRC7Q96NW7 1537 aa8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 B4GALNT3Q6L9W6 998 aa8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 LMTK2Q8IWU2 1503 aa8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 ANP32AP39687 249 aaKnown RBP8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 TRAIPQ9BWF2 469 aa8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 KIF7Q2M1P5 1343 aa8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 SOCS7O14512 581 aa8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 SMARCA5O60264 1052 aaPredicted RBP8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 SEMA3FQ13275 785 aa8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.37□□□□□ -1.07
TM9SF4-202ENST00000398022 DAPK1P53355 1430 aa8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 EP400Q96L91 3159 aa8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 SHANK2Q9UPX8 1470 aa8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 TCERG1O14776 1098 aaKnown RBP8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 NBPF9Q3BBW0 867 aa8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 HSP90AB3PQ58FF7 597 aa8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 MYBPC2Q14324 1141 aa8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 CCDC96Q2M329 555 aa8.36□□□□□ -1.07
TM9SF4-202ENST00000398022 CCDC184Q52MB2 194 aa8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 ANKRD13AQ8IZ07 590 aa8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 VGLL3A8MV65 326 aa8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 TPD52L2O43399 206 aaKnown RBP8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 OTUD6BQ8N6M0 293 aa8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 CCDC141Q6ZP82 1450 aa8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 SETD1AO15047 1707 aaKnown RBP8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 NBPF8Q3BBV2 869 aa8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 NLRP1Q9C000 1473 aa8.35□□□□□ -1.07
TM9SF4-202ENST00000398022 NRDCO43847 1150 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 ROCK2O75116 1388 aaKnown RBP8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 LAMC1P11047 1609 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 ERVK-7P63135 1459 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 NUDCQ9Y266 331 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 NRXN3Q9Y4C0 1643 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 NME8Q8N427 588 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 DHX29Q7Z478 1369 aaKnown RBP8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 ZNF335Q9H4Z2 1342 aaPredicted RBP8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 MARCH6O60337 910 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 RALBP1Q15311 655 aa8.34□□□□□ -1.07
TM9SF4-202ENST00000398022 SMG6Q86US8 1419 aaKnown RBP8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 GORABQ5T7V8 394 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 TMC1Q8TDI8 760 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 CFDP1Q9UEE9 299 aaPredicted RBP8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 DIP2AQ14689 1571 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 WASHC2CQ9Y4E1 1318 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 ARMCX6Q7L4S7 300 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 CCDC82Q8N4S0 544 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 PDCL3Q9H2J4 239 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 ABCC5O15440 1437 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 APBB1IPQ7Z5R6 666 aaPredicted RBP8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 NOP58Q9Y2X3 529 aaKnown RBP8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 SRCAPQ6ZRS2 3230 aa8.33□□□□□ -1.08
TM9SF4-202ENST00000398022 ROBO1Q9Y6N7 1651 aa8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 ARID4AP29374 1257 aaPredicted RBP8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 TMEM131LA2VDJ0 1609 aa8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 USP47Q96K76 1375 aa8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 ZNF644Q9H582 1327 aaPredicted RBP8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 COL16A1Q07092 1604 aaPredicted RBP8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 RBM26Q5T8P6 1007 aaKnown RBP8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 TAF3Q5VWG9 929 aa8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 ARHGAP31Q2M1Z3 1444 aa8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 SPATA31E1Q6ZUB1 1445 aa8.32□□□□□ -1.08
TM9SF4-202ENST00000398022 GOLIM4O00461 696 aa8.31□□□□□ -1.08
TM9SF4-202ENST00000398022 UNC13BO14795 1591 aa8.31□□□□□ -1.08
TM9SF4-202ENST00000398022 FOXD4L1Q9NU39 408 aa8.31□□□□□ -1.08
TM9SF4-202ENST00000398022 IRF6O14896 467 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 POLD1P28340 1107 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 SMAP1Q8IYB5 467 aaPredicted RBP8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 MPNDQ8N594 471 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 PPME1Q9Y570 386 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 ANKRD30AQ9BXX3 1397 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 SHPRHQ149N8 1683 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 NCKAP5LQ9HCH0 1330 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 RBM27Q9P2N5 1060 aaKnown RBP8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 SPINK5Q9NQ38 1064 aaPredicted RBP8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 ZNF777Q9ULD5 760 aaPredicted RBP8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 EFCAB6Q5THR3 1501 aa8.3□□□□□ -1.08
TM9SF4-202ENST00000398022 MLECQ14165 292 aa8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 E9PCH4 1651 aa8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 ERCC3P19447 782 aa8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 MTA3Q9BTC8 594 aa8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 KTN1Q86UP2 1357 aaKnown RBP8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 CALRP27797 417 aaKnown RBP8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 CARD11Q9BXL7 1154 aa8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 DMRT2Q9Y5R5 561 aa8.29□□□□□ -1.08
TM9SF4-202ENST00000398022 KIF15Q9NS87 1388 aa8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 SDR16C5Q8N3Y7 309 aa8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 XRN1Q8IZH2 1706 aaKnown RBP8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 DUOX2Q9NRD8 1548 aa8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 HDAC1Q13547 482 aaPredicted RBP8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 UTP14CQ5TAP6 766 aaKnown RBP8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 TSPAN18Q96SJ8 248 aa8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 ZBTB47Q9UFB7 747 aaPredicted RBP8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 HNRNPMP52272 730 aaKnown RBP eCLIP8.28□□□□□ -1.083e-7■■■□□ 15.8
TM9SF4-202ENST00000398022 FOXD4Q12950 439 aaPredicted RBP8.28□□□□□ -1.08
TM9SF4-202ENST00000398022 CFAP65Q6ZU64 1925 aaKnown RBP8.27□□□□□ -1.08
TM9SF4-202ENST00000398022 SSR1P43307 286 aaKnown RBP8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 DNTTIP2Q5QJE6 756 aaKnown RBP8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 YY1AP1Q9H869 796 aa8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 NHSL1Q5SYE7 1610 aa8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 ADGRB3O60242 1522 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms