RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 KIF20BQ96Q89 1820 aa28.71■■■□□ 2.19
CPNE1-204ENST00000397443 TTC21BQ7Z4L5 1316 aa28.71■■■□□ 2.19
CPNE1-204ENST00000397443 XPCQ01831 940 aaPredicted RBP28.71■■■□□ 2.19
CPNE1-204ENST00000397443 MRS2Q9HD23 443 aa28.71■■■□□ 2.19
CPNE1-204ENST00000397443 ZRANB1Q9UGI0 708 aa28.71■■■□□ 2.19
CPNE1-204ENST00000397443 PAK3O75914 559 aaPredicted RBP28.69■■■□□ 2.18
CPNE1-204ENST00000397443 PSME1Q06323 249 aa28.69■■■□□ 2.18
CPNE1-204ENST00000397443 NSD2O96028 1365 aa28.69■■■□□ 2.18
CPNE1-204ENST00000397443 NRKQ7Z2Y5 1582 aa28.67■■■□□ 2.18
CPNE1-204ENST00000397443 PPP2R1AP30153 589 aa28.67■■■□□ 2.18
CPNE1-204ENST00000397443 SLAIN2Q9P270 581 aa28.67■■■□□ 2.18
CPNE1-204ENST00000397443 DDX17Q92841 729 aaKnown RBP28.66■■■□□ 2.18
CPNE1-204ENST00000397443 NLRP13Q86W25 1043 aa28.65■■■□□ 2.18
CPNE1-204ENST00000397443 SSH2Q76I76 1423 aa28.64■■■□□ 2.17
CPNE1-204ENST00000397443 YTHDC1Q96MU7 727 aaKnown RBP28.63■■■□□ 2.17
CPNE1-204ENST00000397443 KIF1AQ12756 1690 aa28.62■■■□□ 2.17
CPNE1-204ENST00000397443 NUTM2GQ5VZR2 741 aa28.62■■■□□ 2.17
CPNE1-204ENST00000397443 ANKRD26Q9UPS8 1709 aa28.61■■■□□ 2.17
CPNE1-204ENST00000397443 COG3Q96JB2 828 aa28.61■■■□□ 2.17
CPNE1-204ENST00000397443 BRINP3Q76B58 766 aa28.61■■■□□ 2.17
CPNE1-204ENST00000397443 FBLN1P23142 703 aa28.6■■■□□ 2.17
CPNE1-204ENST00000397443 TTC21AQ8NDW8 1320 aa28.6■■■□□ 2.17
CPNE1-204ENST00000397443 KRT28Q7Z3Y7 464 aa28.59■■■□□ 2.17
CPNE1-204ENST00000397443 BRD4O60885 1362 aaPredicted RBP28.58■■■□□ 2.17
CPNE1-204ENST00000397443 ABTB2Q8N961 1025 aa28.58■■■□□ 2.17
CPNE1-204ENST00000397443 SOX12O15370 315 aa28.57■■■□□ 2.16
CPNE1-204ENST00000397443 LMOD2Q6P5Q4 547 aa28.57■■■□□ 2.16
CPNE1-204ENST00000397443 FAM9BQ8IZU0 186 aa28.56■■■□□ 2.16
CPNE1-204ENST00000397443 PLEKHG5O94827 1062 aa28.55■■■□□ 2.16
CPNE1-204ENST00000397443 NLRP6P59044 892 aa28.55■■■□□ 2.16
CPNE1-204ENST00000397443 PIK3C2AO00443 1686 aa28.55■■■□□ 2.16
CPNE1-204ENST00000397443 NPHP3Q7Z494 1330 aa28.53■■■□□ 2.16
CPNE1-204ENST00000397443 MTHFSP49914 203 aa28.53■■■□□ 2.16
CPNE1-204ENST00000397443 OVOS2A0A0J9YW53 1432 aa28.52■■■□□ 2.16
CPNE1-204ENST00000397443 OVOS2Q6IE36 1432 aa28.52■■■□□ 2.16
CPNE1-204ENST00000397443 PPM1GO15355 546 aaPredicted RBP28.5■■■□□ 2.15
CPNE1-204ENST00000397443 RRS1Q15050 365 aaKnown RBP28.48■■■□□ 2.15
CPNE1-204ENST00000397443 TRPM3Q9HCF6 1732 aaPredicted RBP28.47■■■□□ 2.15
CPNE1-204ENST00000397443 PNISRQ8TF01 805 aaKnown RBP28.46■■■□□ 2.15
CPNE1-204ENST00000397443 USP31Q70CQ4 1352 aa28.46■■■□□ 2.15
CPNE1-204ENST00000397443 EMILIN1Q9Y6C2 1016 aa28.45■■■□□ 2.15
CPNE1-204ENST00000397443 MAP2P11137 1827 aaKnown RBP28.45■■■□□ 2.15
CPNE1-204ENST00000397443 POLKQ9UBT6 870 aa28.45■■■□□ 2.14
CPNE1-204ENST00000397443 SCAF1Q9H7N4 1312 aaKnown RBP28.44■■■□□ 2.14
CPNE1-204ENST00000397443 PXDNQ92626 1479 aa28.44■■■□□ 2.14
CPNE1-204ENST00000397443 PIP4K2BP78356 416 aa28.43■■■□□ 2.14
CPNE1-204ENST00000397443 ROBO1Q9Y6N7 1651 aa28.42■■■□□ 2.14
CPNE1-204ENST00000397443 MARF1Q9Y4F3 1742 aaKnown RBP28.42■■■□□ 2.14
CPNE1-204ENST00000397443 UBAP1LF5GYI3 381 aa28.41■■■□□ 2.14
CPNE1-204ENST00000397443 TOM1O60784 492 aa28.41■■■□□ 2.14
CPNE1-204ENST00000397443 CFAP53Q96M91 514 aa28.41■■■□□ 2.14
CPNE1-204ENST00000397443 AATKQ6ZMQ8 1374 aa28.4■■■□□ 2.14
CPNE1-204ENST00000397443 SBNO1A3KN83 1393 aa28.39■■■□□ 2.14
CPNE1-204ENST00000397443 TNS3Q68CZ2 1445 aa28.38■■■□□ 2.13
CPNE1-204ENST00000397443 SOS2Q07890 1332 aaPredicted RBP28.37■■■□□ 2.13
CPNE1-204ENST00000397443 WDR43Q15061 677 aaKnown RBP eCLIP28.37■■■□□ 2.13
CPNE1-204ENST00000397443 CERKQ8TCT0 537 aa28.37■■■□□ 2.13
CPNE1-204ENST00000397443 ALS2Q96Q42 1657 aa28.37■■■□□ 2.13
CPNE1-204ENST00000397443 SPATA31A3Q5VYP0 1347 aa28.37■■■□□ 2.13
CPNE1-204ENST00000397443 ZBTB7CA1YPR0 619 aa28.35■■■□□ 2.13
CPNE1-204ENST00000397443 NHSL1Q5SYE7 1610 aa28.35■■■□□ 2.13
CPNE1-204ENST00000397443 USP54Q70EL1 1684 aa28.35■■■□□ 2.13
CPNE1-204ENST00000397443 SENP3-EIF4A1A0A087X0R7 540 aa28.35■■■□□ 2.13
CPNE1-204ENST00000397443 MAP3K19Q56UN5 1328 aa28.34■■■□□ 2.13
CPNE1-204ENST00000397443 CABLES1Q8TDN4 633 aa28.33■■■□□ 2.13
CPNE1-204ENST00000397443 ADAMTS8Q9UP79 889 aa28.33■■■□□ 2.13
CPNE1-204ENST00000397443 GCP02774 474 aa28.31■■■□□ 2.12
CPNE1-204ENST00000397443 AMPHP49418 695 aa28.3■■■□□ 2.12
CPNE1-204ENST00000397443 ARHGEF10O15013 1369 aa28.3■■■□□ 2.12
CPNE1-204ENST00000397443 SMG6Q86US8 1419 aaKnown RBP28.3■■■□□ 2.12
CPNE1-204ENST00000397443 HNRNPUQ00839 825 aaKnown RBP eCLIP28.3■■■□□ 2.12
CPNE1-204ENST00000397443 KCNH5Q8NCM2 988 aa28.3■■■□□ 2.12
CPNE1-204ENST00000397443 USP19O94966 1318 aa28.29■■■□□ 2.12
CPNE1-204ENST00000397443 U2SURPO15042 1029 aaKnown RBP28.29■■■□□ 2.12
CPNE1-204ENST00000397443 COL3A1P02461 1466 aaPredicted RBP28.28■■■□□ 2.12
CPNE1-204ENST00000397443 CDK12Q9NYV4 1490 aaPredicted RBP28.28■■■□□ 2.12
CPNE1-204ENST00000397443 PNPLA6Q8IY17 1366 aa28.28■■■□□ 2.12
CPNE1-204ENST00000397443 DIAPH1O60610 1272 aaKnown RBP28.28■■■□□ 2.12
CPNE1-204ENST00000397443 PEAK1Q9H792 1746 aa28.28■■■□□ 2.12
CPNE1-204ENST00000397443 SHPRHQ149N8 1683 aa28.28■■■□□ 2.12
CPNE1-204ENST00000397443 MED1Q15648 1581 aaPredicted RBP28.28■■■□□ 2.12
CPNE1-204ENST00000397443 NFAT5O94916 1531 aa28.27■■■□□ 2.12
CPNE1-204ENST00000397443 HSP90AB2PQ58FF8 381 aa28.27■■■□□ 2.12
CPNE1-204ENST00000397443 IQSEC2Q5JU85 1478 aa28.27■■■□□ 2.12
CPNE1-204ENST00000397443 SLIT3O75094 1523 aa28.26■■■□□ 2.11
CPNE1-204ENST00000397443 ZC3H6P61129 1189 aaKnown RBP28.26■■■□□ 2.11
CPNE1-204ENST00000397443 U2AF1L5P0DN76 240 aaPredicted RBP28.25■■■□□ 2.11
CPNE1-204ENST00000397443 U2AF1Q01081 240 aaKnown RBP eCLIP28.25■■■□□ 2.116e-11■■□□□ 12.7
CPNE1-204ENST00000397443 NUDCQ9Y266 331 aa28.25■■■□□ 2.11
CPNE1-204ENST00000397443 AHDC1Q5TGY3 1603 aaPredicted RBP28.24■■■□□ 2.11
CPNE1-204ENST00000397443 LTN1O94822 1766 aa28.24■■■□□ 2.11
CPNE1-204ENST00000397443 CCDC146Q8IYE0 955 aa28.23■■■□□ 2.11
CPNE1-204ENST00000397443 FLT4P35916 1363 aa28.23■■■□□ 2.11
CPNE1-204ENST00000397443 LRRC59Q96AG4 307 aaKnown RBP28.22■■■□□ 2.11
CPNE1-204ENST00000397443 INSRP06213 1382 aa28.22■■■□□ 2.11
CPNE1-204ENST00000397443 HAP1P54257 671 aaPredicted RBP28.22■■■□□ 2.11
CPNE1-204ENST00000397443 PHLPP1O60346 1717 aa28.21■■■□□ 2.11
CPNE1-204ENST00000397443 HOXC9P31274 260 aa28.21■■■□□ 2.11
CPNE1-204ENST00000397443 PHRF1Q9P1Y6 1649 aaKnown RBP28.21■■■□□ 2.11
CPNE1-204ENST00000397443 EIF4A2Q14240 407 aaKnown RBP28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms