RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 RRBP1Q9P2E9 1410 aaKnown RBP14.31□□□□□ -0.12
NEDD9-203ENST00000397378 NRXN1Q9ULB1 1477 aa14.31□□□□□ -0.12
NEDD9-203ENST00000397378 KNDC1Q76NI1 1749 aa14.3□□□□□ -0.12
NEDD9-203ENST00000397378 TECPR2O15040 1411 aa14.3□□□□□ -0.12
NEDD9-203ENST00000397378 GIGYF1O75420 1035 aaPredicted RBP14.28□□□□□ -0.12
NEDD9-203ENST00000397378 PDE3BQ13370 1112 aa14.28□□□□□ -0.12
NEDD9-203ENST00000397378 SPATA31A1Q5TZJ5 1347 aa14.28□□□□□ -0.12
NEDD9-203ENST00000397378 CASZ1Q86V15 1759 aa14.27□□□□□ -0.12
NEDD9-203ENST00000397378 PMFBP1Q8TBY8 1022 aa14.26□□□□□ -0.13
NEDD9-203ENST00000397378 PRDM11Q9NQV5 511 aa14.26□□□□□ -0.13
NEDD9-203ENST00000397378 STRN4Q9NRL3 753 aa14.26□□□□□ -0.13
NEDD9-203ENST00000397378 USP35Q9P2H5 1018 aa14.26□□□□□ -0.13
NEDD9-203ENST00000397378 TRPM3Q9HCF6 1732 aaPredicted RBP14.26□□□□□ -0.13
NEDD9-203ENST00000397378 ZBTB7AO95365 584 aa14.25□□□□□ -0.13
NEDD9-203ENST00000397378 ALS2Q96Q42 1657 aa14.25□□□□□ -0.13
NEDD9-203ENST00000397378 CEP350Q5VT06 3117 aa14.24□□□□□ -0.13
NEDD9-203ENST00000397378 ABCC11Q96J66 1382 aa14.24□□□□□ -0.13
NEDD9-203ENST00000397378 TMEM132EQ6IEE7 984 aa14.24□□□□□ -0.13
NEDD9-203ENST00000397378 SYT17Q9BSW7 474 aa14.23□□□□□ -0.13
NEDD9-203ENST00000397378 FHDC1Q9C0D6 1143 aaPredicted RBP14.23□□□□□ -0.13
NEDD9-203ENST00000397378 CRYBG1Q9Y4K1 1723 aa14.23□□□□□ -0.13
NEDD9-203ENST00000397378 ADGRF5Q8IZF2 1346 aa14.22□□□□□ -0.13
NEDD9-203ENST00000397378 PDGFDQ9GZP0 370 aaPredicted RBP14.22□□□□□ -0.13
NEDD9-203ENST00000397378 ANO8Q9HCE9 1232 aaPredicted RBP14.22□□□□□ -0.13
NEDD9-203ENST00000397378 ATF5Q9Y2D1 282 aaPredicted RBP14.22□□□□□ -0.13
NEDD9-203ENST00000397378 PTGER2P43116 358 aa14.21□□□□□ -0.13
NEDD9-203ENST00000397378 DLC1Q96QB1 1528 aa14.2□□□□□ -0.14
NEDD9-203ENST00000397378 RGPD3A6NKT7 1758 aaPredicted RBP14.2□□□□□ -0.14
NEDD9-203ENST00000397378 RGPD4Q7Z3J3 1758 aa14.2□□□□□ -0.14
NEDD9-203ENST00000397378 CHRNA2Q15822 529 aa14.2□□□□□ -0.14
NEDD9-203ENST00000397378 YTHDC2Q9H6S0 1430 aaKnown RBP14.2□□□□□ -0.14
NEDD9-203ENST00000397378 GPRASP1Q5JY77 1395 aa14.2□□□□□ -0.14
NEDD9-203ENST00000397378 SLC4A1APQ9BWU0 796 aaKnown RBP14.19□□□□□ -0.14
NEDD9-203ENST00000397378 KIAA0232Q92628 1395 aa14.19□□□□□ -0.14
NEDD9-203ENST00000397378 PAK3O75914 559 aaPredicted RBP14.18□□□□□ -0.14
NEDD9-203ENST00000397378 EVA1CP58658 441 aa14.18□□□□□ -0.14
NEDD9-203ENST00000397378 SAFB2Q14151 953 aaKnown RBP eCLIP14.18□□□□□ -0.14
NEDD9-203ENST00000397378 BARGINQ6ZT62 677 aa14.18□□□□□ -0.14
NEDD9-203ENST00000397378 BCL11BQ9C0K0 894 aaPredicted RBP14.18□□□□□ -0.14
NEDD9-203ENST00000397378 PPARGC1BQ86YN6 1023 aaKnown RBP14.17□□□□□ -0.14
NEDD9-203ENST00000397378 ANKRD30BQ9BXX2 1392 aa14.17□□□□□ -0.14
NEDD9-203ENST00000397378 ANKARQ7Z5J8 1434 aa14.16□□□□□ -0.14
NEDD9-203ENST00000397378 PHRF1Q9P1Y6 1649 aaKnown RBP14.16□□□□□ -0.14
NEDD9-203ENST00000397378 SPATA31E1Q6ZUB1 1445 aa14.15□□□□□ -0.14
NEDD9-203ENST00000397378 SSH2Q76I76 1423 aa14.15□□□□□ -0.14
NEDD9-203ENST00000397378 PLSCR1O15162 318 aa14.15□□□□□ -0.14
NEDD9-203ENST00000397378 ZC3H6P61129 1189 aaKnown RBP14.15□□□□□ -0.14
NEDD9-203ENST00000397378 GPR162Q16538 588 aa14.15□□□□□ -0.14
NEDD9-203ENST00000397378 RGL3Q3MIN7 710 aa14.15□□□□□ -0.14
NEDD9-203ENST00000397378 PIK3C2GO75747 1445 aa14.15□□□□□ -0.14
NEDD9-203ENST00000397378 ACIN1Q9UKV3 1341 aaKnown RBP14.15□□□□□ -0.15
NEDD9-203ENST00000397378 C11orf95C9JLR9 678 aaPredicted RBP14.14□□□□□ -0.15
NEDD9-203ENST00000397378 TCP11L2Q8N4U5 519 aa14.14□□□□□ -0.15
NEDD9-203ENST00000397378 SIRT1Q96EB6 747 aa14.14□□□□□ -0.15
NEDD9-203ENST00000397378 PARP4Q9UKK3 1724 aaKnown RBP14.14□□□□□ -0.15
NEDD9-203ENST00000397378 OVOS2A0A0G2JMS6 1433 aa14.14□□□□□ -0.15
NEDD9-203ENST00000397378 OVOS2A0A0J9YW53 1432 aa14.14□□□□□ -0.15
NEDD9-203ENST00000397378 OVOS2Q6IE36 1432 aa14.14□□□□□ -0.15
NEDD9-203ENST00000397378 SBF2Q86WG5 1849 aa14.13□□□□□ -0.15
NEDD9-203ENST00000397378 LARP1Q6PKG0 1096 aaKnown RBP14.13□□□□□ -0.15
NEDD9-203ENST00000397378 PRAM1Q96QH2 718 aa14.13□□□□□ -0.15
NEDD9-203ENST00000397378 STK32BQ9NY57 414 aa14.13□□□□□ -0.15
NEDD9-203ENST00000397378 SHANK3Q9BYB0 1731 aa14.12□□□□□ -0.15
NEDD9-203ENST00000397378 MTFR1LQ9H019 292 aa14.12□□□□□ -0.15
NEDD9-203ENST00000397378 PELP1Q8IZL8 1130 aaKnown RBP14.11□□□□□ -0.15
NEDD9-203ENST00000397378 NGDNQ8NEJ9 315 aaKnown RBP14.11□□□□□ -0.15
NEDD9-203ENST00000397378 ARXQ96QS3 562 aa14.11□□□□□ -0.15
NEDD9-203ENST00000397378 PEAK1Q9H792 1746 aa14.11□□□□□ -0.15
NEDD9-203ENST00000397378 POGKQ9P215 609 aa14.1□□□□□ -0.15
NEDD9-203ENST00000397378 DHX57Q6P158 1386 aaKnown RBP14.09□□□□□ -0.15
NEDD9-203ENST00000397378 SGIP1Q9BQI5 828 aa14.09□□□□□ -0.15
NEDD9-203ENST00000397378 THRAP3Q9Y2W1 955 aaKnown RBP14.09□□□□□ -0.15
NEDD9-203ENST00000397378 SLC15A2Q16348 729 aa14.08□□□□□ -0.16
NEDD9-203ENST00000397378 NUTM2GQ5VZR2 741 aa14.08□□□□□ -0.16
NEDD9-203ENST00000397378 KLHL34Q8N239 644 aa14.08□□□□□ -0.16
NEDD9-203ENST00000397378 PROM2Q8N271 834 aa14.08□□□□□ -0.16
NEDD9-203ENST00000397378 HIRIP3Q9BW71 556 aaPredicted RBP14.08□□□□□ -0.16
NEDD9-203ENST00000397378 LRRC37A3O60309 1634 aa14.08□□□□□ -0.16
NEDD9-203ENST00000397378 EIF3AQ14152 1382 aaKnown RBP14.08□□□□□ -0.16
NEDD9-203ENST00000397378 PTF1AQ7RTS3 328 aa14.07□□□□□ -0.16
NEDD9-203ENST00000397378 C14orf93Q9H972 538 aaKnown RBP14.07□□□□□ -0.16
NEDD9-203ENST00000397378 PRR36Q9H6K5 1346 aa14.07□□□□□ -0.16
NEDD9-203ENST00000397378 MAP3K5Q99683 1374 aa14.07□□□□□ -0.16
NEDD9-203ENST00000397378 TULP4Q9NRJ4 1543 aa14.06□□□□□ -0.16
NEDD9-203ENST00000397378 TXNRD1Q16881 649 aa14.06□□□□□ -0.16
NEDD9-203ENST00000397378 LMO7Q8WWI1 1683 aa14.06□□□□□ -0.16
NEDD9-203ENST00000397378 GOLGB1Q14789 3259 aaKnown RBP14.06□□□□□ -0.16
NEDD9-203ENST00000397378 ATP7BP35670 1465 aa14.06□□□□□ -0.16
NEDD9-203ENST00000397378 HSPA6P17066 643 aa14.05□□□□□ -0.16
NEDD9-203ENST00000397378 DDB1Q16531 1140 aa14.04□□□□□ -0.16
NEDD9-203ENST00000397378 MPHOSPH9Q99550 1183 aa14.04□□□□□ -0.16
NEDD9-203ENST00000397378 MINK1Q8N4C8 1332 aaPredicted RBP14.04□□□□□ -0.16
NEDD9-203ENST00000397378 ITSN1Q15811 1721 aa14.04□□□□□ -0.16
NEDD9-203ENST00000397378 AKAP12Q02952 1782 aa14.04□□□□□ -0.16
NEDD9-203ENST00000397378 CFAP70Q5T0N1 1121 aa14.03□□□□□ -0.16
NEDD9-203ENST00000397378 COL5A2P05997 1499 aaPredicted RBP14.02□□□□□ -0.16
NEDD9-203ENST00000397378 CRB1P82279 1406 aa14.01□□□□□ -0.17
NEDD9-203ENST00000397378 ATP10DQ9P241 1426 aa14□□□□□ -0.17
NEDD9-203ENST00000397378 WASLO00401 505 aaPredicted RBP14□□□□□ -0.17
NEDD9-203ENST00000397378 GPBP1L1Q9HC44 474 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms