RNA–Protein interactions for RNA: ENST00000396547.5

TRIM39-203, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene TRIM39, Length 3,187 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-203ENST00000396547 TRIM44Q96DX7 344 aaPredicted RBP12.46□□□□□ -0.42
TRIM39-203ENST00000396547 ZMYND15Q9H091 742 aa12.46□□□□□ -0.42
TRIM39-203ENST00000396547 TRPM1Q7Z4N2 1603 aa12.46□□□□□ -0.42
TRIM39-203ENST00000396547 FTSJ3Q8IY81 847 aaKnown RBP12.45□□□□□ -0.42
TRIM39-203ENST00000396547 RWDD1Q9H446 243 aaPredicted RBP12.45□□□□□ -0.42
TRIM39-203ENST00000396547 CHMP5Q9NZZ3 219 aa12.44□□□□□ -0.42
TRIM39-203ENST00000396547 SETBP1Q9Y6X0 1596 aa12.44□□□□□ -0.42
TRIM39-203ENST00000396547 SCAF11Q99590 1463 aaKnown RBP12.44□□□□□ -0.42
TRIM39-203ENST00000396547 RARSP54136 660 aaKnown RBP12.44□□□□□ -0.42
TRIM39-203ENST00000396547 HSCBQ8IWL3 235 aa12.43□□□□□ -0.42
TRIM39-203ENST00000396547 TCP11L2Q8N4U5 519 aa12.43□□□□□ -0.42
TRIM39-203ENST00000396547 PPLO60437 1756 aa12.43□□□□□ -0.42
TRIM39-203ENST00000396547 THEMISQ8N1K5 641 aaPredicted RBP12.43□□□□□ -0.42
TRIM39-203ENST00000396547 FBXO31Q5XUX0 539 aaPredicted RBP12.42□□□□□ -0.42
TRIM39-203ENST00000396547 MORC1Q86VD1 984 aa12.42□□□□□ -0.42
TRIM39-203ENST00000396547 GRPEL1Q9HAV7 217 aa12.42□□□□□ -0.42
TRIM39-203ENST00000396547 TMEM2Q9UHN6 1383 aa12.42□□□□□ -0.42
TRIM39-203ENST00000396547 SETD1AO15047 1707 aaKnown RBP12.42□□□□□ -0.42
TRIM39-203ENST00000396547 GPRASP1Q5JY77 1395 aa12.42□□□□□ -0.42
TRIM39-203ENST00000396547 CLCN1P35523 988 aa12.42□□□□□ -0.42
TRIM39-203ENST00000396547 CARD14Q9BXL6 1004 aa12.42□□□□□ -0.42
TRIM39-203ENST00000396547 CFAP65Q6ZU64 1925 aaKnown RBP12.41□□□□□ -0.42
TRIM39-203ENST00000396547 CHGAP10645 457 aaKnown RBP12.41□□□□□ -0.42
TRIM39-203ENST00000396547 NPHP4O75161 1426 aaPredicted RBP12.41□□□□□ -0.42
TRIM39-203ENST00000396547 ESPNB1AK53 854 aa12.41□□□□□ -0.42
TRIM39-203ENST00000396547 MRE11P49959 708 aa12.41□□□□□ -0.42
TRIM39-203ENST00000396547 CFAP70Q5T0N1 1121 aa12.41□□□□□ -0.42
TRIM39-203ENST00000396547 NRXN3Q9Y4C0 1643 aa12.41□□□□□ -0.42
TRIM39-203ENST00000396547 INSRP06213 1382 aa12.41□□□□□ -0.42
TRIM39-203ENST00000396547 CHD2O14647 1828 aaKnown RBP12.41□□□□□ -0.42
TRIM39-203ENST00000396547 NEXMIFQ5QGS0 1516 aa12.41□□□□□ -0.42
TRIM39-203ENST00000396547 HSP90AB1P08238 724 aaKnown RBP12.4□□□□□ -0.42
TRIM39-203ENST00000396547 ITPRIPQ8IWB1 547 aa12.4□□□□□ -0.42
TRIM39-203ENST00000396547 TSR2Q969E8 191 aaKnown RBP12.4□□□□□ -0.42
TRIM39-203ENST00000396547 STRCP1A6NGW2 1772 aa12.4□□□□□ -0.42
TRIM39-203ENST00000396547 FSD2A1L4K1 749 aa12.4□□□□□ -0.42
TRIM39-203ENST00000396547 ARID3AQ99856 593 aa12.4□□□□□ -0.42
TRIM39-203ENST00000396547 PLEKHG1Q9ULL1 1385 aa12.39□□□□□ -0.43
TRIM39-203ENST00000396547 ERBB4Q15303 1308 aa12.39□□□□□ -0.43
TRIM39-203ENST00000396547 U2AF1L5P0DN76 240 aaPredicted RBP12.38□□□□□ -0.43
TRIM39-203ENST00000396547 U2AF1Q01081 240 aaKnown RBP eCLIP12.38□□□□□ -0.43
TRIM39-203ENST00000396547 SMC4Q9NTJ3 1288 aa12.38□□□□□ -0.43
TRIM39-203ENST00000396547 NCLP19338 710 aaKnown RBP12.38□□□□□ -0.43
TRIM39-203ENST00000396547 GAS2L3Q86XJ1 694 aa12.38□□□□□ -0.43
TRIM39-203ENST00000396547 XIRP1Q702N8 1843 aaKnown RBP12.38□□□□□ -0.43
TRIM39-203ENST00000396547 LNPKQ9C0E8 428 aa12.37□□□□□ -0.43
TRIM39-203ENST00000396547 PIK3R4Q99570 1358 aa12.37□□□□□ -0.43
TRIM39-203ENST00000396547 SLC12A5Q9H2X9 1139 aa12.37□□□□□ -0.43
TRIM39-203ENST00000396547 XRN1Q8IZH2 1706 aaKnown RBP12.37□□□□□ -0.43
TRIM39-203ENST00000396547 RUNDC1Q96C34 613 aa12.36□□□□□ -0.43
TRIM39-203ENST00000396547 NCOA3Q9Y6Q9 1424 aa12.36□□□□□ -0.43
TRIM39-203ENST00000396547 NRXN1Q9ULB1 1477 aa12.36□□□□□ -0.43
TRIM39-203ENST00000396547 MTHFSP49914 203 aa12.36□□□□□ -0.43
TRIM39-203ENST00000396547 DZIP1LQ8IYY4 767 aaKnown RBP12.36□□□□□ -0.43
TRIM39-203ENST00000396547 LAMC1P11047 1609 aa12.36□□□□□ -0.43
TRIM39-203ENST00000396547 U2SURPO15042 1029 aaKnown RBP12.36□□□□□ -0.43
TRIM39-203ENST00000396547 ZKSCAN2Q63HK3 967 aa12.36□□□□□ -0.43
TRIM39-203ENST00000396547 TNPO1Q92973 898 aaKnown RBP12.36□□□□□ -0.43
TRIM39-203ENST00000396547 ASXL1Q8IXJ9 1541 aa12.36□□□□□ -0.43
TRIM39-203ENST00000396547 ZBTB7CA1YPR0 619 aa12.35□□□□□ -0.43
TRIM39-203ENST00000396547 MVPQ14764 893 aaKnown RBP12.35□□□□□ -0.43
TRIM39-203ENST00000396547 TRAK1Q9UPV9 953 aa12.35□□□□□ -0.43
TRIM39-203ENST00000396547 DDX11L8A8MPP1 907 aa12.35□□□□□ -0.43
TRIM39-203ENST00000396547 RBM10P98175 930 aaKnown RBP12.35□□□□□ -0.43
TRIM39-203ENST00000396547 IDI1Q13907 227 aa12.35□□□□□ -0.43
TRIM39-203ENST00000396547 ANKLE2Q86XL3 938 aa12.35□□□□□ -0.43
TRIM39-203ENST00000396547 RPGRIP1LQ68CZ1 1315 aa12.35□□□□□ -0.43
TRIM39-203ENST00000396547 KNDC1Q76NI1 1749 aa12.34□□□□□ -0.43
TRIM39-203ENST00000396547 RRP9O43818 475 aaKnown RBP12.34□□□□□ -0.43
TRIM39-203ENST00000396547 HSPA2P54652 639 aa12.34□□□□□ -0.43
TRIM39-203ENST00000396547 PIK3C2GO75747 1445 aa12.33□□□□□ -0.43
TRIM39-203ENST00000396547 RIMS2Q9UQ26 1411 aa12.33□□□□□ -0.43
TRIM39-203ENST00000396547 MYOM2P54296 1465 aa12.33□□□□□ -0.44
TRIM39-203ENST00000396547 EXOSC9Q06265 439 aaKnown RBP12.33□□□□□ -0.44
TRIM39-203ENST00000396547 RBM42Q9BTD8 480 aaKnown RBP12.33□□□□□ -0.44
TRIM39-203ENST00000396547 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.32□□□□□ -0.44
TRIM39-203ENST00000396547 SAFB2Q14151 953 aaKnown RBP eCLIP12.32□□□□□ -0.44
TRIM39-203ENST00000396547 GBP4Q96PP9 640 aa12.31□□□□□ -0.44
TRIM39-203ENST00000396547 KIAA1210Q9ULL0 1709 aa12.31□□□□□ -0.44
TRIM39-203ENST00000396547 KIAA1211Q6ZU35 1233 aa12.31□□□□□ -0.44
TRIM39-203ENST00000396547 ANP32BQ92688 251 aaKnown RBP12.31□□□□□ -0.44
TRIM39-203ENST00000396547 NOB1Q9ULX3 412 aaKnown RBP12.31□□□□□ -0.44
TRIM39-203ENST00000396547 ADAMTS13Q76LX8 1427 aa12.31□□□□□ -0.44
TRIM39-203ENST00000396547 TRIM27P14373 513 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 HDGFP51858 240 aaKnown RBP12.3□□□□□ -0.44
TRIM39-203ENST00000396547 CFAP53Q96M91 514 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 NUTM2DQ5VT03 806 aaPredicted RBP12.3□□□□□ -0.44
TRIM39-203ENST00000396547 SSH1Q8WYL5 1049 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 C1orf115Q9H7X2 142 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 ALKQ9UM73 1620 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 SSFA2P28290 1259 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 ANKRD45Q5TZF3 282 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 TMEM132EQ6IEE7 984 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 DDX49Q9Y6V7 483 aaKnown RBP12.3□□□□□ -0.44
TRIM39-203ENST00000396547 NCKAP5LQ9HCH0 1330 aa12.3□□□□□ -0.44
TRIM39-203ENST00000396547 TMEM57Q8N5G2 664 aa12.29□□□□□ -0.44
TRIM39-203ENST00000396547 ADGRF5Q8IZF2 1346 aa12.29□□□□□ -0.44
TRIM39-203ENST00000396547 CD2BP2O95400 341 aaKnown RBP12.29□□□□□ -0.44
TRIM39-203ENST00000396547 NINLQ9Y2I6 1382 aa12.28□□□□□ -0.44
TRIM39-203ENST00000396547 FAM13BQ9NYF5 915 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms