RNA–Protein interactions for RNA: ENST00000394202.8

CNN3-202, Transcript of calponin 3, humanhuman

TSL 2 BASIC

Gene CNN3, Length 1,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-202ENST00000394202 MORC1Q86VD1 984 aa31.59■■■□□ 2.65
CNN3-202ENST00000394202 TNNT2P45379 298 aaPredicted RBP31.57■■■□□ 2.65
CNN3-202ENST00000394202 FOXO3O43524 673 aa31.57■■■□□ 2.64
CNN3-202ENST00000394202 PPP2R1AP30153 589 aa31.57■■■□□ 2.64
CNN3-202ENST00000394202 NSD2O96028 1365 aa31.57■■■□□ 2.64
CNN3-202ENST00000394202 NRKQ7Z2Y5 1582 aa31.56■■■□□ 2.64
CNN3-202ENST00000394202 MRS2Q9HD23 443 aa31.55■■■□□ 2.64
CNN3-202ENST00000394202 NLRP13Q86W25 1043 aa31.52■■■□□ 2.64
CNN3-202ENST00000394202 SLAIN2Q9P270 581 aa31.52■■■□□ 2.64
CNN3-202ENST00000394202 XPCQ01831 940 aaPredicted RBP31.52■■■□□ 2.64
CNN3-202ENST00000394202 PSME1Q06323 249 aa31.51■■■□□ 2.63
CNN3-202ENST00000394202 KIF20BQ96Q89 1820 aa31.51■■■□□ 2.63
CNN3-202ENST00000394202 DDX17Q92841 729 aaKnown RBP31.5■■■□□ 2.63
CNN3-202ENST00000394202 FBLN1P23142 703 aa31.47■■■□□ 2.63
CNN3-202ENST00000394202 BRD4O60885 1362 aaPredicted RBP31.47■■■□□ 2.63
CNN3-202ENST00000394202 PAK3O75914 559 aaPredicted RBP31.47■■■□□ 2.63
CNN3-202ENST00000394202 BRINP3Q76B58 766 aa31.47■■■□□ 2.63
CNN3-202ENST00000394202 TTC21AQ8NDW8 1320 aa31.46■■■□□ 2.63
CNN3-202ENST00000394202 ANKRD26Q9UPS8 1709 aa31.44■■■□□ 2.62
CNN3-202ENST00000394202 COG3Q96JB2 828 aa31.43■■■□□ 2.62
CNN3-202ENST00000394202 KIF1AQ12756 1690 aa31.43■■■□□ 2.62
CNN3-202ENST00000394202 KRT28Q7Z3Y7 464 aa31.43■■■□□ 2.62
CNN3-202ENST00000394202 NUTM2GQ5VZR2 741 aa31.42■■■□□ 2.62
CNN3-202ENST00000394202 YTHDC1Q96MU7 727 aaKnown RBP31.41■■■□□ 2.62
CNN3-202ENST00000394202 PIK3C2AO00443 1686 aa31.4■■■□□ 2.62
CNN3-202ENST00000394202 OVOS2A0A0J9YW53 1432 aa31.4■■■□□ 2.62
CNN3-202ENST00000394202 OVOS2Q6IE36 1432 aa31.4■■■□□ 2.62
CNN3-202ENST00000394202 ABTB2Q8N961 1025 aa31.39■■■□□ 2.62
CNN3-202ENST00000394202 MTHFSP49914 203 aa31.39■■■□□ 2.62
CNN3-202ENST00000394202 FAM9BQ8IZU0 186 aa31.38■■■□□ 2.61
CNN3-202ENST00000394202 PNISRQ8TF01 805 aaKnown RBP31.38■■■□□ 2.61
CNN3-202ENST00000394202 NLRP6P59044 892 aa31.37■■■□□ 2.61
CNN3-202ENST00000394202 USP31Q70CQ4 1352 aa31.36■■■□□ 2.61
CNN3-202ENST00000394202 NPHP3Q7Z494 1330 aa31.35■■■□□ 2.61
CNN3-202ENST00000394202 SCAF1Q9H7N4 1312 aaKnown RBP31.33■■■□□ 2.61
CNN3-202ENST00000394202 TRPM3Q9HCF6 1732 aaPredicted RBP31.33■■■□□ 2.61
CNN3-202ENST00000394202 POLKQ9UBT6 870 aa31.32■■■□□ 2.6
CNN3-202ENST00000394202 SOX12O15370 315 aa31.32■■■□□ 2.6
CNN3-202ENST00000394202 PXDNQ92626 1479 aa31.31■■■□□ 2.6
CNN3-202ENST00000394202 RRS1Q15050 365 aaKnown RBP31.3■■■□□ 2.6
CNN3-202ENST00000394202 LMOD2Q6P5Q4 547 aa31.3■■■□□ 2.6
CNN3-202ENST00000394202 EMILIN1Q9Y6C2 1016 aa31.3■■■□□ 2.6
CNN3-202ENST00000394202 MARF1Q9Y4F3 1742 aaKnown RBP31.29■■■□□ 2.6
CNN3-202ENST00000394202 AATKQ6ZMQ8 1374 aa31.28■■■□□ 2.6
CNN3-202ENST00000394202 PPM1GO15355 546 aaPredicted RBP31.26■■■□□ 2.59
CNN3-202ENST00000394202 PLEKHG5O94827 1062 aa31.26■■■□□ 2.59
CNN3-202ENST00000394202 MAP2P11137 1827 aaKnown RBP31.25■■■□□ 2.59
CNN3-202ENST00000394202 SBNO1A3KN83 1393 aa31.24■■■□□ 2.59
CNN3-202ENST00000394202 SOS2Q07890 1332 aaPredicted RBP31.24■■■□□ 2.59
CNN3-202ENST00000394202 USP54Q70EL1 1684 aa31.22■■■□□ 2.59
CNN3-202ENST00000394202 SPATA31A3Q5VYP0 1347 aa31.22■■■□□ 2.59
CNN3-202ENST00000394202 ALS2Q96Q42 1657 aa31.21■■■□□ 2.59
CNN3-202ENST00000394202 ROBO1Q9Y6N7 1651 aa31.2■■■□□ 2.59
CNN3-202ENST00000394202 TNS3Q68CZ2 1445 aa31.2■■■□□ 2.58
CNN3-202ENST00000394202 PNPLA6Q8IY17 1366 aa31.19■■■□□ 2.58
CNN3-202ENST00000394202 ADAMTS8Q9UP79 889 aa31.19■■■□□ 2.58
CNN3-202ENST00000394202 CFAP53Q96M91 514 aa31.19■■■□□ 2.58
CNN3-202ENST00000394202 SMG6Q86US8 1419 aaKnown RBP31.19■■■□□ 2.58
CNN3-202ENST00000394202 MAP3K19Q56UN5 1328 aa31.18■■■□□ 2.58
CNN3-202ENST00000394202 TOM1O60784 492 aa31.17■■■□□ 2.58
CNN3-202ENST00000394202 CERKQ8TCT0 537 aa31.17■■■□□ 2.58
CNN3-202ENST00000394202 COL3A1P02461 1466 aaPredicted RBP31.17■■■□□ 2.58
CNN3-202ENST00000394202 NHSL1Q5SYE7 1610 aa31.17■■■□□ 2.58
CNN3-202ENST00000394202 PIP4K2BP78356 416 aa31.17■■■□□ 2.58
CNN3-202ENST00000394202 USP19O94966 1318 aa31.16■■■□□ 2.58
CNN3-202ENST00000394202 UBAP1LF5GYI3 381 aa31.16■■■□□ 2.58
CNN3-202ENST00000394202 GCP02774 474 aa31.15■■■□□ 2.58
CNN3-202ENST00000394202 WDR43Q15061 677 aaKnown RBP eCLIP31.14■■■□□ 2.58
CNN3-202ENST00000394202 CABLES1Q8TDN4 633 aa31.14■■■□□ 2.57
CNN3-202ENST00000394202 INSRP06213 1382 aa31.13■■■□□ 2.57
CNN3-202ENST00000394202 SHPRHQ149N8 1683 aa31.13■■■□□ 2.57
CNN3-202ENST00000394202 PEAK1Q9H792 1746 aa31.13■■■□□ 2.57
CNN3-202ENST00000394202 SENP3-EIF4A1A0A087X0R7 540 aa31.13■■■□□ 2.57
CNN3-202ENST00000394202 MED1Q15648 1581 aaPredicted RBP31.13■■■□□ 2.57
CNN3-202ENST00000394202 NFAT5O94916 1531 aa31.12■■■□□ 2.57
CNN3-202ENST00000394202 CDK12Q9NYV4 1490 aaPredicted RBP31.12■■■□□ 2.57
CNN3-202ENST00000394202 SLIT3O75094 1523 aa31.11■■■□□ 2.57
CNN3-202ENST00000394202 HSP90AB2PQ58FF8 381 aa31.1■■■□□ 2.57
CNN3-202ENST00000394202 KCNH5Q8NCM2 988 aa31.1■■■□□ 2.57
CNN3-202ENST00000394202 HNRNPUQ00839 825 aaKnown RBP eCLIP31.1■■■□□ 2.57
CNN3-202ENST00000394202 ARHGEF10O15013 1369 aa31.09■■■□□ 2.57
CNN3-202ENST00000394202 DIAPH1O60610 1272 aaKnown RBP31.09■■■□□ 2.57
CNN3-202ENST00000394202 IQSEC2Q5JU85 1478 aa31.09■■■□□ 2.57
CNN3-202ENST00000394202 AMPHP49418 695 aa31.06■■■□□ 2.56
CNN3-202ENST00000394202 AHDC1Q5TGY3 1603 aaPredicted RBP31.06■■■□□ 2.56
CNN3-202ENST00000394202 IL13P35225 146 aa31.05■■■□□ 2.56
CNN3-202ENST00000394202 U2SURPO15042 1029 aaKnown RBP31.05■■■□□ 2.56
CNN3-202ENST00000394202 ZBTB7CA1YPR0 619 aa31.04■■■□□ 2.56
CNN3-202ENST00000394202 ARHGEF25Q86VW2 580 aa31.04■■■□□ 2.56
CNN3-202ENST00000394202 FLT4P35916 1363 aa31.04■■■□□ 2.56
CNN3-202ENST00000394202 U2AF1L5P0DN76 240 aaPredicted RBP31.03■■■□□ 2.56
CNN3-202ENST00000394202 HOXC9P31274 260 aa31.03■■■□□ 2.56
CNN3-202ENST00000394202 ZC3H6P61129 1189 aaKnown RBP31.03■■■□□ 2.56
CNN3-202ENST00000394202 U2AF1Q01081 240 aaKnown RBP eCLIP31.03■■■□□ 2.56
CNN3-202ENST00000394202 EIF4A2Q14240 407 aaKnown RBP31.03■■■□□ 2.56
CNN3-202ENST00000394202 CCDC146Q8IYE0 955 aa31.03■■■□□ 2.56
CNN3-202ENST00000394202 NUDCQ9Y266 331 aa31.02■■■□□ 2.56
CNN3-202ENST00000394202 BLMP54132 1417 aaPredicted RBP31.01■■■□□ 2.56
CNN3-202ENST00000394202 LRRC59Q96AG4 307 aaKnown RBP31.01■■■□□ 2.55
CNN3-202ENST00000394202 LTN1O94822 1766 aa31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms