RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 KIF20BQ96Q89 1820 aa16.67■□□□□ 0.26
CIITA-202ENST00000381835 ESCO1Q5FWF5 840 aa16.64■□□□□ 0.25
CIITA-202ENST00000381835 ANKRD26Q9UPS8 1709 aa16.63■□□□□ 0.25
CIITA-202ENST00000381835 NME9Q86XW9 330 aa16.63■□□□□ 0.25
CIITA-202ENST00000381835 USP6P35125 1406 aa16.63■□□□□ 0.25
CIITA-202ENST00000381835 POLR3AO14802 1390 aaPredicted RBP16.63■□□□□ 0.25
CIITA-202ENST00000381835 XIRP1Q702N8 1843 aaKnown RBP16.63■□□□□ 0.25
CIITA-202ENST00000381835 ATF3P18847 181 aa16.63■□□□□ 0.25
CIITA-202ENST00000381835 HNRNPUQ00839 825 aaKnown RBP eCLIP16.63■□□□□ 0.25
CIITA-202ENST00000381835 PNISRQ8TF01 805 aaKnown RBP16.63■□□□□ 0.25
CIITA-202ENST00000381835 PHF8Q9UPP1 1060 aa16.63■□□□□ 0.25
CIITA-202ENST00000381835 NCOA3Q9Y6Q9 1424 aa16.62■□□□□ 0.25
CIITA-202ENST00000381835 TTC21BQ7Z4L5 1316 aa16.61■□□□□ 0.25
CIITA-202ENST00000381835 LRRC7Q96NW7 1537 aa16.61■□□□□ 0.25
CIITA-202ENST00000381835 ORAI2Q96SN7 254 aa16.61■□□□□ 0.25
CIITA-202ENST00000381835 ZRANB1Q9UGI0 708 aa16.61■□□□□ 0.25
CIITA-202ENST00000381835 NRKQ7Z2Y5 1582 aa16.6■□□□□ 0.25
CIITA-202ENST00000381835 MSH6P52701 1360 aa16.6■□□□□ 0.25
CIITA-202ENST00000381835 PRKCSHP14314 528 aaPredicted RBP16.59■□□□□ 0.25
CIITA-202ENST00000381835 DCCP43146 1447 aa16.58■□□□□ 0.24
CIITA-202ENST00000381835 MTHFSP49914 203 aa16.58■□□□□ 0.24
CIITA-202ENST00000381835 CADPS2Q86UW7 1296 aa16.58■□□□□ 0.24
CIITA-202ENST00000381835 COG3Q96JB2 828 aa16.58■□□□□ 0.24
CIITA-202ENST00000381835 C1orf167Q5SNV9 1468 aa16.58■□□□□ 0.24
CIITA-202ENST00000381835 SSH2Q76I76 1423 aa16.57■□□□□ 0.24
CIITA-202ENST00000381835 FOXO3O43524 673 aa16.56■□□□□ 0.24
CIITA-202ENST00000381835 PAK3O75914 559 aaPredicted RBP16.56■□□□□ 0.24
CIITA-202ENST00000381835 FBLN1P23142 703 aa16.56■□□□□ 0.24
CIITA-202ENST00000381835 PSME1Q06323 249 aa16.56■□□□□ 0.24
CIITA-202ENST00000381835 MST1RQ04912 1400 aa16.56■□□□□ 0.24
CIITA-202ENST00000381835 TTC21AQ8NDW8 1320 aa16.55■□□□□ 0.24
CIITA-202ENST00000381835 MAP2P11137 1827 aaKnown RBP16.54■□□□□ 0.24
CIITA-202ENST00000381835 AEBP2Q6ZN18 517 aaPredicted RBP16.54■□□□□ 0.24
CIITA-202ENST00000381835 BCL11AQ9H165 835 aa16.54■□□□□ 0.24
CIITA-202ENST00000381835 XPCQ01831 940 aaPredicted RBP16.53■□□□□ 0.24
CIITA-202ENST00000381835 WDR43Q15061 677 aaKnown RBP eCLIP16.53■□□□□ 0.24
CIITA-202ENST00000381835 IRX6P78412 446 aaPredicted RBP16.53■□□□□ 0.24
CIITA-202ENST00000381835 ERICH6Q7L0X2 663 aa16.53■□□□□ 0.24
CIITA-202ENST00000381835 NUTM2GQ5VZR2 741 aa16.52■□□□□ 0.24
CIITA-202ENST00000381835 PIK3C2AO00443 1686 aa16.52■□□□□ 0.23
CIITA-202ENST00000381835 SENP3-EIF4A1A0A087X0R7 540 aa16.52■□□□□ 0.23
CIITA-202ENST00000381835 PPM1GO15355 546 aaPredicted RBP16.52■□□□□ 0.23
CIITA-202ENST00000381835 ABTB2Q8N961 1025 aa16.52■□□□□ 0.23
CIITA-202ENST00000381835 CFAP53Q96M91 514 aa16.52■□□□□ 0.23
CIITA-202ENST00000381835 KIF1AQ12756 1690 aa16.51■□□□□ 0.23
CIITA-202ENST00000381835 ADAMTS8Q9UP79 889 aa16.51■□□□□ 0.23
CIITA-202ENST00000381835 OVOS2A0A0J9YW53 1432 aa16.51■□□□□ 0.23
CIITA-202ENST00000381835 OVOS2Q6IE36 1432 aa16.51■□□□□ 0.23
CIITA-202ENST00000381835 SOX12O15370 315 aa16.51■□□□□ 0.23
CIITA-202ENST00000381835 NLRP6P59044 892 aa16.51■□□□□ 0.23
CIITA-202ENST00000381835 POLKQ9UBT6 870 aa16.5■□□□□ 0.23
CIITA-202ENST00000381835 RRS1Q15050 365 aaKnown RBP16.5■□□□□ 0.23
CIITA-202ENST00000381835 DDX17Q92841 729 aaKnown RBP16.49■□□□□ 0.23
CIITA-202ENST00000381835 EMILIN1Q9Y6C2 1016 aa16.49■□□□□ 0.23
CIITA-202ENST00000381835 KRT28Q7Z3Y7 464 aa16.48■□□□□ 0.23
CIITA-202ENST00000381835 SLAIN2Q9P270 581 aa16.48■□□□□ 0.23
CIITA-202ENST00000381835 LMOD2Q6P5Q4 547 aa16.47■□□□□ 0.23
CIITA-202ENST00000381835 AATKQ6ZMQ8 1374 aa16.47■□□□□ 0.23
CIITA-202ENST00000381835 USP31Q70CQ4 1352 aa16.47■□□□□ 0.23
CIITA-202ENST00000381835 SHPRHQ149N8 1683 aa16.47■□□□□ 0.23
CIITA-202ENST00000381835 ERICH6BQ5W0A0 696 aa16.46■□□□□ 0.23
CIITA-202ENST00000381835 BRINP3Q76B58 766 aa16.46■□□□□ 0.23
CIITA-202ENST00000381835 LTBP4Q8N2S1 1624 aa16.45■□□□□ 0.22
CIITA-202ENST00000381835 MARF1Q9Y4F3 1742 aaKnown RBP16.45■□□□□ 0.22
CIITA-202ENST00000381835 MSH5O43196 834 aa16.45■□□□□ 0.22
CIITA-202ENST00000381835 PLEKHG5O94827 1062 aa16.45■□□□□ 0.22
CIITA-202ENST00000381835 NPHP3Q7Z494 1330 aa16.44■□□□□ 0.22
CIITA-202ENST00000381835 TRPM3Q9HCF6 1732 aaPredicted RBP16.44■□□□□ 0.22
CIITA-202ENST00000381835 SALL2Q9Y467 1007 aaPredicted RBP16.44■□□□□ 0.22
CIITA-202ENST00000381835 FANCIQ9NVI1 1328 aa16.43■□□□□ 0.22
CIITA-202ENST00000381835 COL3A1P02461 1466 aaPredicted RBP16.43■□□□□ 0.22
CIITA-202ENST00000381835 PNPLA6Q8IY17 1366 aa16.43■□□□□ 0.22
CIITA-202ENST00000381835 DIAPH1O60610 1272 aaKnown RBP16.43■□□□□ 0.22
CIITA-202ENST00000381835 CCDC146Q8IYE0 955 aa16.43■□□□□ 0.22
CIITA-202ENST00000381835 BLMP54132 1417 aaPredicted RBP16.43■□□□□ 0.22
CIITA-202ENST00000381835 U2SURPO15042 1029 aaKnown RBP16.42■□□□□ 0.22
CIITA-202ENST00000381835 PPP4R2Q9NY27 417 aa16.42■□□□□ 0.22
CIITA-202ENST00000381835 NUDCQ9Y266 331 aa16.42■□□□□ 0.22
CIITA-202ENST00000381835 ZBED9Q6R2W3 1325 aa16.42■□□□□ 0.22
CIITA-202ENST00000381835 U2AF1L5P0DN76 240 aaPredicted RBP16.42■□□□□ 0.22
CIITA-202ENST00000381835 U2AF1Q01081 240 aaKnown RBP eCLIP16.42■□□□□ 0.22
CIITA-202ENST00000381835 SMG6Q86US8 1419 aaKnown RBP16.42■□□□□ 0.22
CIITA-202ENST00000381835 USP54Q70EL1 1684 aa16.42■□□□□ 0.22
CIITA-202ENST00000381835 CDK12Q9NYV4 1490 aaPredicted RBP16.41■□□□□ 0.22
CIITA-202ENST00000381835 INSRP06213 1382 aa16.41■□□□□ 0.22
CIITA-202ENST00000381835 MAP3K19Q56UN5 1328 aa16.41■□□□□ 0.22
CIITA-202ENST00000381835 PEAK1Q9H792 1746 aa16.39■□□□□ 0.21
CIITA-202ENST00000381835 ALS2Q96Q42 1657 aa16.38■□□□□ 0.21
CIITA-202ENST00000381835 PXDNQ92626 1479 aa16.38■□□□□ 0.21
CIITA-202ENST00000381835 AMPHP49418 695 aa16.38■□□□□ 0.21
CIITA-202ENST00000381835 HSP90AB2PQ58FF8 381 aa16.37■□□□□ 0.21
CIITA-202ENST00000381835 SBNO1A3KN83 1393 aa16.37■□□□□ 0.21
CIITA-202ENST00000381835 IL13P35225 146 aa16.36■□□□□ 0.21
CIITA-202ENST00000381835 KCNH5Q8NCM2 988 aa16.36■□□□□ 0.21
CIITA-202ENST00000381835 LTN1O94822 1766 aa16.36■□□□□ 0.21
CIITA-202ENST00000381835 ZBTB7CA1YPR0 619 aa16.36■□□□□ 0.21
CIITA-202ENST00000381835 APAF1O14727 1248 aa16.36■□□□□ 0.21
CIITA-202ENST00000381835 TNS3Q68CZ2 1445 aa16.35■□□□□ 0.21
CIITA-202ENST00000381835 GCP02774 474 aa16.35■□□□□ 0.21
CIITA-202ENST00000381835 FLT4P35916 1363 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms