RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 ALKQ9UM73 1620 aa17.54■□□□□ 0.4
SDC1-202ENST00000381150 TNNQ9UQP3 1299 aa17.54■□□□□ 0.4
SDC1-202ENST00000381150 PPP6R1Q9UPN7 881 aa17.53■□□□□ 0.4
SDC1-202ENST00000381150 CLTCQ00610 1675 aaKnown RBP17.53■□□□□ 0.4
SDC1-202ENST00000381150 YTHDC2Q9H6S0 1430 aaKnown RBP17.53■□□□□ 0.4
SDC1-202ENST00000381150 MTHFSP49914 203 aa17.53■□□□□ 0.4
SDC1-202ENST00000381150 PHF23Q9BUL5 403 aaPredicted RBP17.53■□□□□ 0.4
SDC1-202ENST00000381150 STK26Q9P289 416 aa17.53■□□□□ 0.4
SDC1-202ENST00000381150 NSD2O96028 1365 aa17.53■□□□□ 0.4
SDC1-202ENST00000381150 IQSEC2Q5JU85 1478 aa17.53■□□□□ 0.4
SDC1-202ENST00000381150 E9PSI1 815 aa17.52■□□□□ 0.4
SDC1-202ENST00000381150 WWC1Q8IX03 1113 aa17.52■□□□□ 0.4
SDC1-202ENST00000381150 ZBTB7CA1YPR0 619 aa17.52■□□□□ 0.4
SDC1-202ENST00000381150 SAFB2Q14151 953 aaKnown RBP eCLIP17.52■□□□□ 0.4
SDC1-202ENST00000381150 CD163L1Q9NR16 1453 aa17.51■□□□□ 0.39
SDC1-202ENST00000381150 A0A1W2PP64 1363 aa17.51■□□□□ 0.39
SDC1-202ENST00000381150 MAPK8IP3Q9UPT6 1336 aa17.51■□□□□ 0.39
SDC1-202ENST00000381150 PDZRN3Q9UPQ7 1066 aa17.51■□□□□ 0.39
SDC1-202ENST00000381150 SPATA31D1Q6ZQQ2 1576 aa17.51■□□□□ 0.39
SDC1-202ENST00000381150 ABCC11Q96J66 1382 aa17.5■□□□□ 0.39
SDC1-202ENST00000381150 NINLQ9Y2I6 1382 aa17.5■□□□□ 0.39
SDC1-202ENST00000381150 RUNDC1Q96C34 613 aa17.49■□□□□ 0.39
SDC1-202ENST00000381150 PRAM1Q96QH2 718 aa17.49■□□□□ 0.39
SDC1-202ENST00000381150 A2ML1A8K2U0 1454 aa17.49■□□□□ 0.39
SDC1-202ENST00000381150 ESPNB1AK53 854 aa17.49■□□□□ 0.39
SDC1-202ENST00000381150 SETD1AO15047 1707 aaKnown RBP17.49■□□□□ 0.39
SDC1-202ENST00000381150 CLCN1P35523 988 aa17.48■□□□□ 0.39
SDC1-202ENST00000381150 RBM10P98175 930 aaKnown RBP17.48■□□□□ 0.39
SDC1-202ENST00000381150 GRPEL1Q9HAV7 217 aa17.48■□□□□ 0.39
SDC1-202ENST00000381150 NLRP1Q9C000 1473 aa17.48■□□□□ 0.39
SDC1-202ENST00000381150 ARHGEF40Q8TER5 1519 aa17.48■□□□□ 0.39
SDC1-202ENST00000381150 HSCBQ8IWL3 235 aa17.47■□□□□ 0.39
SDC1-202ENST00000381150 TCP11L2Q8N4U5 519 aa17.46■□□□□ 0.39
SDC1-202ENST00000381150 NCLP19338 710 aaKnown RBP17.46■□□□□ 0.39
SDC1-202ENST00000381150 PCDHB15Q9Y5E8 787 aa17.46■□□□□ 0.39
SDC1-202ENST00000381150 ATAD2Q6PL18 1390 aa17.46■□□□□ 0.39
SDC1-202ENST00000381150 RRP9O43818 475 aaKnown RBP17.46■□□□□ 0.39
SDC1-202ENST00000381150 MRE11P49959 708 aa17.46■□□□□ 0.39
SDC1-202ENST00000381150 SRPK2P78362 688 aaKnown RBP17.46■□□□□ 0.39
SDC1-202ENST00000381150 C22orf23Q9BZE7 217 aa17.46■□□□□ 0.39
SDC1-202ENST00000381150 ANTXR1Q9H6X2 564 aa17.46■□□□□ 0.39
SDC1-202ENST00000381150 ANKRD26Q9UPS8 1709 aa17.46■□□□□ 0.38
SDC1-202ENST00000381150 MINK1Q8N4C8 1332 aaPredicted RBP17.45■□□□□ 0.38
SDC1-202ENST00000381150 KIF13AQ9H1H9 1805 aa17.45■□□□□ 0.38
SDC1-202ENST00000381150 FTSJ3Q8IY81 847 aaKnown RBP17.45■□□□□ 0.38
SDC1-202ENST00000381150 CHMP5Q9NZZ3 219 aa17.45■□□□□ 0.38
SDC1-202ENST00000381150 TBC1D32Q96NH3 1257 aa17.45■□□□□ 0.38
SDC1-202ENST00000381150 MED14O60244 1454 aa17.44■□□□□ 0.38
SDC1-202ENST00000381150 NCBP3Q53F19 620 aaKnown RBP17.44■□□□□ 0.38
SDC1-202ENST00000381150 FYB1O15117 783 aa17.44■□□□□ 0.38
SDC1-202ENST00000381150 CCDC27Q2M243 656 aa17.44■□□□□ 0.38
SDC1-202ENST00000381150 HSP90AB1P08238 724 aaKnown RBP17.43■□□□□ 0.38
SDC1-202ENST00000381150 DLC1Q96QB1 1528 aa17.43■□□□□ 0.38
SDC1-202ENST00000381150 COL3A1P02461 1466 aaPredicted RBP17.43■□□□□ 0.38
SDC1-202ENST00000381150 ADGRB2O60241 1585 aa17.43■□□□□ 0.38
SDC1-202ENST00000381150 CFAP53Q96M91 514 aa17.43■□□□□ 0.38
SDC1-202ENST00000381150 RLBP1P12271 317 aa17.42■□□□□ 0.38
SDC1-202ENST00000381150 PMFBP1Q8TBY8 1022 aa17.42■□□□□ 0.38
SDC1-202ENST00000381150 WDR63Q8IWG1 891 aa17.42■□□□□ 0.38
SDC1-202ENST00000381150 CDK19Q9BWU1 502 aa17.42■□□□□ 0.38
SDC1-202ENST00000381150 ERBB4Q15303 1308 aa17.42■□□□□ 0.38
SDC1-202ENST00000381150 NRXN3Q9Y4C0 1643 aa17.41■□□□□ 0.38
SDC1-202ENST00000381150 RIMS2Q9UQ26 1411 aa17.41■□□□□ 0.38
SDC1-202ENST00000381150 ANP32BQ92688 251 aaKnown RBP17.41■□□□□ 0.38
SDC1-202ENST00000381150 GGNBP2Q9H3C7 697 aa17.41■□□□□ 0.38
SDC1-202ENST00000381150 RWDD1Q9H446 243 aaPredicted RBP17.41■□□□□ 0.38
SDC1-202ENST00000381150 FAM13BQ9NYF5 915 aa17.4■□□□□ 0.38
SDC1-202ENST00000381150 STAG3Q9UJ98 1225 aa17.4■□□□□ 0.38
SDC1-202ENST00000381150 TERF2IPQ9NYB0 399 aa17.4■□□□□ 0.38
SDC1-202ENST00000381150 PLEKHF1Q96S99 279 aa17.39■□□□□ 0.37
SDC1-202ENST00000381150 KIAA1211Q6ZU35 1233 aa17.38■□□□□ 0.37
SDC1-202ENST00000381150 PDE3AQ14432 1141 aa17.38■□□□□ 0.37
SDC1-202ENST00000381150 WAPLQ7Z5K2 1190 aa17.38■□□□□ 0.37
SDC1-202ENST00000381150 CABP1Q9NZU7 370 aa17.38■□□□□ 0.37
SDC1-202ENST00000381150 PNPLA6Q8IY17 1366 aa17.37■□□□□ 0.37
SDC1-202ENST00000381150 MLECQ14165 292 aa17.37■□□□□ 0.37
SDC1-202ENST00000381150 U2AF1L5P0DN76 240 aaPredicted RBP17.37■□□□□ 0.37
SDC1-202ENST00000381150 U2AF1Q01081 240 aaKnown RBP eCLIP17.37■□□□□ 0.37
SDC1-202ENST00000381150 KIF20BQ96Q89 1820 aa17.36■□□□□ 0.37
SDC1-202ENST00000381150 FSD2A1L4K1 749 aa17.36■□□□□ 0.37
SDC1-202ENST00000381150 RARSP54136 660 aaKnown RBP17.36■□□□□ 0.37
SDC1-202ENST00000381150 ITPRIPQ8IWB1 547 aa17.36■□□□□ 0.37
SDC1-202ENST00000381150 ZMYM3Q14202 1370 aa17.36■□□□□ 0.37
SDC1-202ENST00000381150 DDX11L8A8MPP1 907 aa17.35■□□□□ 0.37
SDC1-202ENST00000381150 MSNP26038 577 aaKnown RBP17.35■□□□□ 0.37
SDC1-202ENST00000381150 GAS2L3Q86XJ1 694 aa17.35■□□□□ 0.37
SDC1-202ENST00000381150 METP08581 1390 aa17.34■□□□□ 0.37
SDC1-202ENST00000381150 HDGFL2Q7Z4V5 671 aaPredicted RBP17.33■□□□□ 0.36
SDC1-202ENST00000381150 R3HCC1Q9Y3T6 440 aaKnown RBP17.32■□□□□ 0.36
SDC1-202ENST00000381150 ATP7BP35670 1465 aa17.32■□□□□ 0.36
SDC1-202ENST00000381150 TPRNQ4KMQ1 711 aa17.32■□□□□ 0.36
SDC1-202ENST00000381150 TNPO1Q92973 898 aaKnown RBP17.32■□□□□ 0.36
SDC1-202ENST00000381150 LNPKQ9C0E8 428 aa17.32■□□□□ 0.36
SDC1-202ENST00000381150 TRIM35Q9UPQ4 493 aa17.32■□□□□ 0.36
SDC1-202ENST00000381150 GBP4Q96PP9 640 aa17.31■□□□□ 0.36
SDC1-202ENST00000381150 A0A0U1RQG5 324 aaPredicted RBP17.31■□□□□ 0.36
SDC1-202ENST00000381150 CPSF1Q10570 1443 aaKnown RBP17.31■□□□□ 0.36
SDC1-202ENST00000381150 DDX49Q9Y6V7 483 aaKnown RBP17.31■□□□□ 0.36
SDC1-202ENST00000381150 TMPOP42166 694 aaKnown RBP17.3■□□□□ 0.36
SDC1-202ENST00000381150 TSR2Q969E8 191 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms