RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 ARHGAP23Q9P227 1491 aa12.58□□□□□ -0.4
TRIM39-202ENST00000376659 FYB1O15117 783 aa12.58□□□□□ -0.4
TRIM39-202ENST00000376659 MORC1Q86VD1 984 aa12.58□□□□□ -0.4
TRIM39-202ENST00000376659 PIK3C2AO00443 1686 aa12.58□□□□□ -0.4
TRIM39-202ENST00000376659 TRIM35Q9UPQ4 493 aa12.57□□□□□ -0.4
TRIM39-202ENST00000376659 TUBGCP6Q96RT7 1819 aa12.57□□□□□ -0.4
TRIM39-202ENST00000376659 CHGAP10645 457 aaKnown RBP12.57□□□□□ -0.4
TRIM39-202ENST00000376659 RARSP54136 660 aaKnown RBP12.57□□□□□ -0.4
TRIM39-202ENST00000376659 TCP11L2Q8N4U5 519 aa12.57□□□□□ -0.4
TRIM39-202ENST00000376659 PDE3AQ14432 1141 aa12.57□□□□□ -0.4
TRIM39-202ENST00000376659 DIP2AQ14689 1571 aa12.56□□□□□ -0.4
TRIM39-202ENST00000376659 PRAM1Q96QH2 718 aa12.56□□□□□ -0.4
TRIM39-202ENST00000376659 EDC4Q6P2E9 1401 aaKnown RBP12.56□□□□□ -0.4
TRIM39-202ENST00000376659 IGHDP01880 384 aa12.56□□□□□ -0.4
TRIM39-202ENST00000376659 USP19O94966 1318 aa12.56□□□□□ -0.4
TRIM39-202ENST00000376659 ZNF142P52746 1687 aaPredicted RBP12.55□□□□□ -0.4
TRIM39-202ENST00000376659 SSH2Q76I76 1423 aa12.55□□□□□ -0.4
TRIM39-202ENST00000376659 RLBP1P12271 317 aa12.54□□□□□ -0.4
TRIM39-202ENST00000376659 FAM69CQ0P6D2 419 aa12.54□□□□□ -0.4
TRIM39-202ENST00000376659 AATKQ6ZMQ8 1374 aa12.54□□□□□ -0.4
TRIM39-202ENST00000376659 TNNQ9UQP3 1299 aa12.53□□□□□ -0.4
TRIM39-202ENST00000376659 PTPRUQ92729 1446 aa12.53□□□□□ -0.4
TRIM39-202ENST00000376659 OVOS2A0A0J9YW53 1432 aa12.53□□□□□ -0.4
TRIM39-202ENST00000376659 OVOS2Q6IE36 1432 aa12.53□□□□□ -0.4
TRIM39-202ENST00000376659 EIF5BO60841 1220 aaKnown RBP12.53□□□□□ -0.4
TRIM39-202ENST00000376659 CYB5RLQ6IPT4 315 aa12.53□□□□□ -0.4
TRIM39-202ENST00000376659 IL16Q14005 1332 aa12.52□□□□□ -0.41
TRIM39-202ENST00000376659 SIRT1Q96EB6 747 aa12.51□□□□□ -0.41
TRIM39-202ENST00000376659 FAM208AQ9UK61 1670 aaKnown RBP12.51□□□□□ -0.41
TRIM39-202ENST00000376659 CDK19Q9BWU1 502 aa12.51□□□□□ -0.41
TRIM39-202ENST00000376659 PHRF1Q9P1Y6 1649 aaKnown RBP12.5□□□□□ -0.41
TRIM39-202ENST00000376659 PIK3R4Q99570 1358 aa12.5□□□□□ -0.41
TRIM39-202ENST00000376659 RRP7AQ9Y3A4 280 aaKnown RBP12.5□□□□□ -0.41
TRIM39-202ENST00000376659 MINK1Q8N4C8 1332 aaPredicted RBP12.5□□□□□ -0.41
TRIM39-202ENST00000376659 NWD1Q149M9 1564 aa12.49□□□□□ -0.41
TRIM39-202ENST00000376659 ROBO2Q9HCK4 1378 aa12.49□□□□□ -0.41
TRIM39-202ENST00000376659 TMEM2Q9UHN6 1383 aa12.49□□□□□ -0.41
TRIM39-202ENST00000376659 RSPH6AQ9H0K4 717 aa12.49□□□□□ -0.41
TRIM39-202ENST00000376659 CHD2O14647 1828 aaKnown RBP12.49□□□□□ -0.41
TRIM39-202ENST00000376659 PTCH1Q13635 1447 aa12.49□□□□□ -0.41
TRIM39-202ENST00000376659 TNNT2P45379 298 aaPredicted RBP12.48□□□□□ -0.41
TRIM39-202ENST00000376659 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.48□□□□□ -0.41
TRIM39-202ENST00000376659 GGNBP2Q9H3C7 697 aa12.48□□□□□ -0.41
TRIM39-202ENST00000376659 PLEKHG1Q9ULL1 1385 aa12.48□□□□□ -0.41
TRIM39-202ENST00000376659 PANK1Q8TE04 598 aa12.48□□□□□ -0.41
TRIM39-202ENST00000376659 CLUAP1Q96AJ1 413 aa12.48□□□□□ -0.41
TRIM39-202ENST00000376659 TMPOP42166 694 aaKnown RBP12.48□□□□□ -0.41
TRIM39-202ENST00000376659 PRR36Q9H6K5 1346 aa12.47□□□□□ -0.41
TRIM39-202ENST00000376659 CT47B1P0C2W7 299 aaPredicted RBP12.47□□□□□ -0.41
TRIM39-202ENST00000376659 PCDHB15Q9Y5E8 787 aa12.47□□□□□ -0.41
TRIM39-202ENST00000376659 POLKQ9UBT6 870 aa12.47□□□□□ -0.41
TRIM39-202ENST00000376659 STK26Q9P289 416 aa12.46□□□□□ -0.41
TRIM39-202ENST00000376659 BRPF1P55201 1214 aaPredicted RBP12.46□□□□□ -0.41
TRIM39-202ENST00000376659 AAMPQ13685 434 aa12.46□□□□□ -0.41
TRIM39-202ENST00000376659 TNRQ92752 1358 aa12.46□□□□□ -0.41
TRIM39-202ENST00000376659 ANP32AP39687 249 aaKnown RBP12.46□□□□□ -0.42
TRIM39-202ENST00000376659 SAFB2Q14151 953 aaKnown RBP eCLIP12.46□□□□□ -0.42
TRIM39-202ENST00000376659 WAPLQ7Z5K2 1190 aa12.46□□□□□ -0.42
TRIM39-202ENST00000376659 CABP1Q9NZU7 370 aa12.46□□□□□ -0.42
TRIM39-202ENST00000376659 FAM161AQ3B820 660 aa12.45□□□□□ -0.42
TRIM39-202ENST00000376659 LTN1O94822 1766 aa12.45□□□□□ -0.42
TRIM39-202ENST00000376659 CAMTA1Q9Y6Y1 1673 aa12.45□□□□□ -0.42
TRIM39-202ENST00000376659 RGS12O14924 1447 aa12.44□□□□□ -0.42
TRIM39-202ENST00000376659 USP31Q70CQ4 1352 aa12.44□□□□□ -0.42
TRIM39-202ENST00000376659 TERF2IPQ9NYB0 399 aa12.44□□□□□ -0.42
TRIM39-202ENST00000376659 IL13P35225 146 aa12.44□□□□□ -0.42
TRIM39-202ENST00000376659 CFAP53Q96M91 514 aa12.44□□□□□ -0.42
TRIM39-202ENST00000376659 WASLO00401 505 aaPredicted RBP12.43□□□□□ -0.42
TRIM39-202ENST00000376659 ZNF853P0CG23 659 aa12.43□□□□□ -0.42
TRIM39-202ENST00000376659 SRPK2P78362 688 aaKnown RBP12.43□□□□□ -0.42
TRIM39-202ENST00000376659 COG6Q9Y2V7 657 aa12.43□□□□□ -0.42
TRIM39-202ENST00000376659 USP6P35125 1406 aa12.42□□□□□ -0.42
TRIM39-202ENST00000376659 MVPQ14764 893 aaKnown RBP12.42□□□□□ -0.42
TRIM39-202ENST00000376659 TSR2Q969E8 191 aaKnown RBP12.42□□□□□ -0.42
TRIM39-202ENST00000376659 MED1Q15648 1581 aaPredicted RBP12.41□□□□□ -0.42
TRIM39-202ENST00000376659 CRYBG1Q9Y4K1 1723 aa12.41□□□□□ -0.42
TRIM39-202ENST00000376659 U2AF1L5P0DN76 240 aaPredicted RBP12.41□□□□□ -0.42
TRIM39-202ENST00000376659 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.42
TRIM39-202ENST00000376659 MYH16Q9H6N6 1097 aa12.41□□□□□ -0.42
TRIM39-202ENST00000376659 SEC24BO95487 1268 aa12.4□□□□□ -0.42
TRIM39-202ENST00000376659 KDM3BQ7LBC6 1761 aa12.4□□□□□ -0.42
TRIM39-202ENST00000376659 CEP170BQ9Y4F5 1589 aaPredicted RBP12.4□□□□□ -0.42
TRIM39-202ENST00000376659 TRIM27P14373 513 aa12.4□□□□□ -0.42
TRIM39-202ENST00000376659 FCHSD2O94868 740 aa12.4□□□□□ -0.43
TRIM39-202ENST00000376659 NCKAP5LQ9HCH0 1330 aa12.39□□□□□ -0.43
TRIM39-202ENST00000376659 FBLN1P23142 703 aa12.39□□□□□ -0.43
TRIM39-202ENST00000376659 SIPA1L3O60292 1781 aaPredicted RBP12.39□□□□□ -0.43
TRIM39-202ENST00000376659 ADAMTSL3P82987 1691 aa12.39□□□□□ -0.43
TRIM39-202ENST00000376659 SSH1Q8WYL5 1049 aa12.39□□□□□ -0.43
TRIM39-202ENST00000376659 PHACTR3Q96KR7 559 aa12.38□□□□□ -0.43
TRIM39-202ENST00000376659 ZRANB1Q9UGI0 708 aa12.38□□□□□ -0.43
TRIM39-202ENST00000376659 RGPD2P0DJD1 1756 aa12.38□□□□□ -0.43
TRIM39-202ENST00000376659 DIAPH1O60610 1272 aaKnown RBP12.38□□□□□ -0.43
TRIM39-202ENST00000376659 EXOSC9Q06265 439 aaKnown RBP12.38□□□□□ -0.43
TRIM39-202ENST00000376659 HDGFL2Q7Z4V5 671 aaPredicted RBP12.38□□□□□ -0.43
TRIM39-202ENST00000376659 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.38□□□□□ -0.43
TRIM39-202ENST00000376659 ZBTB47Q9UFB7 747 aaPredicted RBP12.38□□□□□ -0.43
TRIM39-202ENST00000376659 TRPM3Q9HCF6 1732 aaPredicted RBP12.38□□□□□ -0.43
TRIM39-202ENST00000376659 HDAC1Q13547 482 aaPredicted RBP12.38□□□□□ -0.43
TRIM39-202ENST00000376659 MAPK8IP3Q9UPT6 1336 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms