RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 DYDC1Q8WWB3 177 aa14.85□□□□□ -0.03
VPS13A-204ENST00000376634 BRPF1P55201 1214 aaPredicted RBP14.85□□□□□ -0.03
VPS13A-204ENST00000376634 RUNDC1Q96C34 613 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 FSD1Q9BTV5 496 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 ANKRD62A6NC57 917 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 JMYQ8N9B5 988 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 GNAI1P63096 354 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 ATF3P18847 181 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 STK11IPQ8N1F8 1099 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 TSPY26PQ9H489 355 aa14.84□□□□□ -0.03
VPS13A-204ENST00000376634 RAPGEF4Q8WZA2 1011 aa14.83□□□□□ -0.03
VPS13A-204ENST00000376634 CECR2Q9BXF3 1484 aa14.83□□□□□ -0.03
VPS13A-204ENST00000376634 DESP17661 470 aa14.83□□□□□ -0.04
VPS13A-204ENST00000376634 GNL3LQ9NVN8 582 aaKnown RBP14.83□□□□□ -0.04
VPS13A-204ENST00000376634 MBD3O95983 291 aa14.83□□□□□ -0.04
VPS13A-204ENST00000376634 LNPKQ9C0E8 428 aa14.82□□□□□ -0.04
VPS13A-204ENST00000376634 RABEP1Q15276 862 aa14.82□□□□□ -0.04
VPS13A-204ENST00000376634 CENPHQ9H3R5 247 aa14.82□□□□□ -0.04
VPS13A-204ENST00000376634 AIMP1Q12904 312 aaKnown RBP14.82□□□□□ -0.04
VPS13A-204ENST00000376634 DEF6Q9H4E7 631 aa14.82□□□□□ -0.04
VPS13A-204ENST00000376634 HMGN5P82970 282 aaKnown RBP14.82□□□□□ -0.04
VPS13A-204ENST00000376634 RRBP1Q9P2E9 1410 aaKnown RBP14.81□□□□□ -0.04
VPS13A-204ENST00000376634 FANCIQ9NVI1 1328 aa14.81□□□□□ -0.04
VPS13A-204ENST00000376634 APAF1O14727 1248 aa14.81□□□□□ -0.04
VPS13A-204ENST00000376634 TRIM21P19474 475 aaKnown RBP14.81□□□□□ -0.04
VPS13A-204ENST00000376634 PPFIBP1Q86W92 1011 aa14.81□□□□□ -0.04
VPS13A-204ENST00000376634 ARHGAP5Q13017 1502 aa14.81□□□□□ -0.04
VPS13A-204ENST00000376634 CCDC181Q5TID7 509 aa14.8□□□□□ -0.04
VPS13A-204ENST00000376634 CAVIN1Q6NZI2 390 aaKnown RBP14.8□□□□□ -0.04
VPS13A-204ENST00000376634 PHF23Q9BUL5 403 aaPredicted RBP14.8□□□□□ -0.04
VPS13A-204ENST00000376634 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.8□□□□□ -0.042e-6■■■□□ 18.5
VPS13A-204ENST00000376634 MRE11P49959 708 aa14.8□□□□□ -0.04
VPS13A-204ENST00000376634 KDM4AO75164 1064 aa14.79□□□□□ -0.04
VPS13A-204ENST00000376634 ATP2B2Q01814 1243 aa14.79□□□□□ -0.04
VPS13A-204ENST00000376634 FMNL2Q96PY5 1086 aa14.79□□□□□ -0.04
VPS13A-204ENST00000376634 MCM2P49736 904 aa14.79□□□□□ -0.04
VPS13A-204ENST00000376634 TDRD9Q8NDG6 1382 aaKnown RBP14.79□□□□□ -0.04
VPS13A-204ENST00000376634 CLASRPQ8N2M8 674 aaKnown RBP14.79□□□□□ -0.04
VPS13A-204ENST00000376634 CNTLNQ9NXG0 1405 aa14.79□□□□□ -0.04
VPS13A-204ENST00000376634 USP8P40818 1118 aa14.79□□□□□ -0.04
VPS13A-204ENST00000376634 PDCL3Q9H2J4 239 aa14.79□□□□□ -0.04
VPS13A-204ENST00000376634 MROH2BQ7Z745 1585 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 DACH1Q9UI36 760 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 EIF3JO75822 258 aaKnown RBP14.78□□□□□ -0.04
VPS13A-204ENST00000376634 STK38Q15208 465 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 RNF214Q8ND24 703 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 ERC1Q8IUD2 1116 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 PKNOX2Q96KN3 472 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 TRIM22Q8IYM9 498 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 SERPINC1P01008 464 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 HMOX1P09601 288 aa14.78□□□□□ -0.04
VPS13A-204ENST00000376634 ATP2B1P20020 1258 aa14.77□□□□□ -0.05
VPS13A-204ENST00000376634 DNAJC2Q99543 621 aaKnown RBP14.77□□□□□ -0.05
VPS13A-204ENST00000376634 CCDC192P0DO97 292 aa14.77□□□□□ -0.05
VPS13A-204ENST00000376634 TTC39AQ5SRH9 613 aa14.76□□□□□ -0.05
VPS13A-204ENST00000376634 KIF21BO75037 1637 aa14.76□□□□□ -0.05
VPS13A-204ENST00000376634 ERLIN1O75477 346 aa14.76□□□□□ -0.05
VPS13A-204ENST00000376634 TAX1BP1Q86VP1 789 aa14.76□□□□□ -0.05
VPS13A-204ENST00000376634 SPC24Q8NBT2 197 aa14.76□□□□□ -0.05
VPS13A-204ENST00000376634 NLRP2Q9NX02 1062 aa14.76□□□□□ -0.05
VPS13A-204ENST00000376634 MATR3P43243 847 aaKnown RBP eCLIP14.76□□□□□ -0.053e-6■■■■□ 20.9
VPS13A-204ENST00000376634 TAF3Q5VWG9 929 aa14.76□□□□□ -0.05
VPS13A-204ENST00000376634 PRKRIP1Q9H875 184 aaPredicted RBP14.76□□□□□ -0.05
VPS13A-204ENST00000376634 FYCO1Q9BQS8 1478 aa14.75□□□□□ -0.05
VPS13A-204ENST00000376634 ANKRD1Q15327 319 aa14.75□□□□□ -0.05
VPS13A-204ENST00000376634 CCDC97Q96F63 343 aaPredicted RBP14.75□□□□□ -0.05
VPS13A-204ENST00000376634 SEPT11Q9NVA2 429 aaKnown RBP14.75□□□□□ -0.05
VPS13A-204ENST00000376634 CCDC30Q5VVM6 783 aa14.75□□□□□ -0.05
VPS13A-204ENST00000376634 CEBPZQ03701 1054 aaKnown RBP14.75□□□□□ -0.05
VPS13A-204ENST00000376634 FIBPO43427 364 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 DHX57Q6P158 1386 aaKnown RBP14.74□□□□□ -0.05
VPS13A-204ENST00000376634 NEBLO76041 1014 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 TNMDQ9H2S6 317 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 GPRASP1Q5JY77 1395 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 ZHX3Q9H4I2 956 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 ME1P48163 572 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 PANK1Q8TE04 598 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 TANGO6Q9C0B7 1094 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 SLC26A8Q96RN1 970 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 NACAP1Q9BZK3 213 aa14.74□□□□□ -0.05
VPS13A-204ENST00000376634 CCDC91Q7Z6B0 441 aa14.73□□□□□ -0.05
VPS13A-204ENST00000376634 LRRCC1Q9C099 1032 aa14.73□□□□□ -0.05
VPS13A-204ENST00000376634 SCAPERQ9BY12 1400 aa14.73□□□□□ -0.05
VPS13A-204ENST00000376634 CBFA2T2O43439 604 aa14.73□□□□□ -0.05
VPS13A-204ENST00000376634 CCDC69A6NI79 296 aa14.72□□□□□ -0.05
VPS13A-204ENST00000376634 GNAI3P08754 354 aa14.72□□□□□ -0.05
VPS13A-204ENST00000376634 CNNM1Q9NRU3 951 aa14.72□□□□□ -0.05
VPS13A-204ENST00000376634 DNAI2Q9GZS0 605 aa14.72□□□□□ -0.05
VPS13A-204ENST00000376634 CDKL5O76039 1030 aa14.72□□□□□ -0.05
VPS13A-204ENST00000376634 CCDC112Q8NEF3 446 aa14.72□□□□□ -0.05
VPS13A-204ENST00000376634 FAM193AP78312 1265 aa14.71□□□□□ -0.05
VPS13A-204ENST00000376634 NEK4P51957 841 aa14.71□□□□□ -0.05
VPS13A-204ENST00000376634 CCDC158Q5M9N0 1113 aa14.71□□□□□ -0.05
VPS13A-204ENST00000376634 LRRFIP2Q9Y608 721 aaKnown RBP14.71□□□□□ -0.05
VPS13A-204ENST00000376634 MYOM3Q5VTT5 1437 aa14.71□□□□□ -0.05
VPS13A-204ENST00000376634 AEBP2Q6ZN18 517 aaPredicted RBP14.71□□□□□ -0.06
VPS13A-204ENST00000376634 AEBP1Q8IUX7 1158 aa14.7□□□□□ -0.06
VPS13A-204ENST00000376634 TRAK2O60296 914 aa14.7□□□□□ -0.06
VPS13A-204ENST00000376634 JAKMIP3Q5VZ66 844 aa14.7□□□□□ -0.06
VPS13A-204ENST00000376634 NFKBIBQ15653 356 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms