RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 ARHGEF12Q9NZN5 1544 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 FAM135AQ9P2D6 1515 aa6.86□□□□□ -1.31
ATG4A-204ENST00000372246 RAPGEF6Q8TEU7 1601 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 CFAP70Q5T0N1 1121 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 TMEM92Q6UXU6 159 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 TNPO1Q92973 898 aaKnown RBP6.85□□□□□ -1.31
ATG4A-204ENST00000372246 ADGRL2O95490 1459 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 NKX1-1Q15270 411 aaPredicted RBP6.85□□□□□ -1.31
ATG4A-204ENST00000372246 FAM163AQ96GL9 167 aaPredicted RBP6.85□□□□□ -1.31
ATG4A-204ENST00000372246 LNPKQ9C0E8 428 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 C1orf115Q9H7X2 142 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 CGNL1Q0VF96 1302 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 MAPK8IP3Q9UPT6 1336 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 KIAA0556O60303 1618 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 INSRP06213 1382 aa6.85□□□□□ -1.31
ATG4A-204ENST00000372246 TARBP1Q13395 1621 aaKnown RBP6.84□□□□□ -1.31
ATG4A-204ENST00000372246 TPRNQ4KMQ1 711 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 NUTM2DQ5VT03 806 aaPredicted RBP6.84□□□□□ -1.31
ATG4A-204ENST00000372246 CHMP7Q8WUX9 453 aaPredicted RBP6.84□□□□□ -1.31
ATG4A-204ENST00000372246 G3V3G9 751 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 SSFA2P28290 1259 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 TAF7LQ5H9L4 462 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 FOXD4L5Q5VV16 416 aaPredicted RBP6.84□□□□□ -1.31
ATG4A-204ENST00000372246 KIAA1211Q6ZU35 1233 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 ITPRIPQ8IWB1 547 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 FOXD4L4Q8WXT5 416 aaPredicted RBP6.84□□□□□ -1.31
ATG4A-204ENST00000372246 SLC12A5Q9H2X9 1139 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 PRDM10Q9NQV6 1147 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 CHMP5Q9NZZ3 219 aa6.84□□□□□ -1.31
ATG4A-204ENST00000372246 RTEL1-TNFRSF6BF6WH68 1400 aa6.84□□□□□ -1.32
ATG4A-204ENST00000372246 PLEKHH2Q8IVE3 1493 aa6.84□□□□□ -1.32
ATG4A-204ENST00000372246 ADCY10Q96PN6 1610 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 NCLP19338 710 aaKnown RBP6.83□□□□□ -1.32
ATG4A-204ENST00000372246 PKP1Q13835 747 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 PDE3AQ14432 1141 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 JPH4Q96JJ6 628 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 FAM13BQ9NYF5 915 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 PPP1R37O75864 691 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 MRE11P49959 708 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 SAFB2Q14151 953 aaKnown RBP eCLIP6.83□□□□□ -1.32
ATG4A-204ENST00000372246 TRIM44Q96DX7 344 aaPredicted RBP6.83□□□□□ -1.32
ATG4A-204ENST00000372246 GPRASP1Q5JY77 1395 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 ADAMTS12P58397 1594 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 ADGBQ8N7X0 1667 aa6.83□□□□□ -1.32
ATG4A-204ENST00000372246 CDC42BPAQ5VT25 1732 aa6.82□□□□□ -1.32
ATG4A-204ENST00000372246 AAMPQ13685 434 aa6.82□□□□□ -1.32
ATG4A-204ENST00000372246 GLIPR1L2Q4G1C9 344 aa6.82□□□□□ -1.32
ATG4A-204ENST00000372246 FTSJ3Q8IY81 847 aaKnown RBP6.82□□□□□ -1.32
ATG4A-204ENST00000372246 TSC1Q92574 1164 aa6.82□□□□□ -1.32
ATG4A-204ENST00000372246 RRP9O43818 475 aaKnown RBP6.82□□□□□ -1.32
ATG4A-204ENST00000372246 FBLN1P23142 703 aa6.82□□□□□ -1.32
ATG4A-204ENST00000372246 MTHFSP49914 203 aa6.82□□□□□ -1.32
ATG4A-204ENST00000372246 HSCBQ8IWL3 235 aa6.82□□□□□ -1.32
ATG4A-204ENST00000372246 PBRM1Q86U86 1689 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 PRDM15P57071 1507 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 PTPRGP23470 1445 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 A0A0U1RQG5 324 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 FAM177BA6PVY3 158 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 ST18O60284 1047 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 HSP90AB1P08238 724 aaKnown RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 TRIM27P14373 513 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 XPCQ01831 940 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 EXOSC9Q06265 439 aaKnown RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 GAS2L2Q8NHY3 880 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 SMC4Q9NTJ3 1288 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 RBM27Q9P2N5 1060 aaKnown RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 R3HCC1Q9Y3T6 440 aaKnown RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 CROCC2H7BZ55 1655 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 POTEMA6NI47 508 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 ELL2O00472 640 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 DTNBO60941 627 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 RIPK4P57078 832 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 MVPQ14764 893 aaKnown RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 TMEM132EQ6IEE7 984 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 PMFBP1Q8TBY8 1022 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 RWDD1Q9H446 243 aaPredicted RBP6.81□□□□□ -1.32
ATG4A-204ENST00000372246 TRAK1Q9UPV9 953 aa6.81□□□□□ -1.32
ATG4A-204ENST00000372246 ADGRF5Q8IZF2 1346 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 EIF4G3O43432 1585 aaKnown RBP6.8□□□□□ -1.32
ATG4A-204ENST00000372246 U2AF1L5P0DN76 240 aaPredicted RBP6.8□□□□□ -1.32
ATG4A-204ENST00000372246 U2AF1Q01081 240 aaKnown RBP eCLIP6.8□□□□□ -1.32
ATG4A-204ENST00000372246 POTEGQ6S5H5 508 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 MORC1Q86VD1 984 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 TMEM57Q8N5G2 664 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 SSH1Q8WYL5 1049 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 KIF2CQ99661 725 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 ATP10BO94823 1461 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 ATAD2Q6PL18 1390 aa6.8□□□□□ -1.32
ATG4A-204ENST00000372246 FOXD4L6Q3SYB3 417 aaPredicted RBP6.8□□□□□ -1.32
ATG4A-204ENST00000372246 FOXD4L3Q6VB84 417 aaPredicted RBP6.8□□□□□ -1.32
ATG4A-204ENST00000372246 NOB1Q9ULX3 412 aaKnown RBP6.8□□□□□ -1.32
ATG4A-204ENST00000372246 ASXL1Q8IXJ9 1541 aa6.79□□□□□ -1.32
ATG4A-204ENST00000372246 MAGI1Q96QZ7 1491 aaPredicted RBP6.79□□□□□ -1.32
ATG4A-204ENST00000372246 U2SURPO15042 1029 aaKnown RBP6.79□□□□□ -1.32
ATG4A-204ENST00000372246 DZIP1LQ8IYY4 767 aaKnown RBP6.79□□□□□ -1.32
ATG4A-204ENST00000372246 ABCC10Q5T3U5 1492 aa6.79□□□□□ -1.32
ATG4A-204ENST00000372246 APBB1O00213 710 aa6.79□□□□□ -1.32
ATG4A-204ENST00000372246 HOXB3P14651 431 aaPredicted RBP6.79□□□□□ -1.32
ATG4A-204ENST00000372246 DDIT3P35638 169 aa6.79□□□□□ -1.32
ATG4A-204ENST00000372246 THUMPD2Q9BTF0 503 aaKnown RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms