RNA–Protein interactions for RNA: ENST00000368979.6

SNX3-203, Transcript of sorting nexin 3, humanhuman

TSL 2

Gene SNX3, Length 1,537 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-203ENST00000368979 LRRC7Q96NW7 1537 aa32.15■■■□□ 2.74
SNX3-203ENST00000368979 TTC21BQ7Z4L5 1316 aa32.15■■■□□ 2.74
SNX3-203ENST00000368979 NGDNQ8NEJ9 315 aaKnown RBP32.15■■■□□ 2.74
SNX3-203ENST00000368979 NME9Q86XW9 330 aa32.13■■■□□ 2.73
SNX3-203ENST00000368979 PHF8Q9UPP1 1060 aa32.13■■■□□ 2.73
SNX3-203ENST00000368979 TNNT2P45379 298 aaPredicted RBP32.12■■■□□ 2.73
SNX3-203ENST00000368979 C1orf167Q5SNV9 1468 aa32.1■■■□□ 2.73
SNX3-203ENST00000368979 TTC21AQ8NDW8 1320 aa32.09■■■□□ 2.73
SNX3-203ENST00000368979 SCAF1Q9H7N4 1312 aaKnown RBP32.09■■■□□ 2.73
SNX3-203ENST00000368979 MST1RQ04912 1400 aa32.09■■■□□ 2.73
SNX3-203ENST00000368979 KIF1AQ12756 1690 aa32.09■■■□□ 2.73
SNX3-203ENST00000368979 INSRP06213 1382 aa32.08■■■□□ 2.73
SNX3-203ENST00000368979 OVOS2A0A0J9YW53 1432 aa32.08■■■□□ 2.73
SNX3-203ENST00000368979 OVOS2Q6IE36 1432 aa32.08■■■□□ 2.73
SNX3-203ENST00000368979 MSH6P52701 1360 aa32.07■■■□□ 2.72
SNX3-203ENST00000368979 ESCO1Q5FWF5 840 aa32.06■■■□□ 2.72
SNX3-203ENST00000368979 PIK3C2AO00443 1686 aa32.06■■■□□ 2.72
SNX3-203ENST00000368979 HNRNPUQ00839 825 aaKnown RBP eCLIP32.05■■■□□ 2.72
SNX3-203ENST00000368979 ATF3P18847 181 aa32.05■■■□□ 2.72
SNX3-203ENST00000368979 MTHFSP49914 203 aa32.05■■■□□ 2.72
SNX3-203ENST00000368979 ZRANB1Q9UGI0 708 aa32.05■■■□□ 2.72
SNX3-203ENST00000368979 SHPRHQ149N8 1683 aa32.04■■■□□ 2.72
SNX3-203ENST00000368979 COG3Q96JB2 828 aa32.04■■■□□ 2.72
SNX3-203ENST00000368979 USP54Q70EL1 1684 aa32.04■■■□□ 2.72
SNX3-203ENST00000368979 CADPS2Q86UW7 1296 aa32.02■■■□□ 2.72
SNX3-203ENST00000368979 AATKQ6ZMQ8 1374 aa32.02■■■□□ 2.72
SNX3-203ENST00000368979 ORAI2Q96SN7 254 aa32.01■■■□□ 2.72
SNX3-203ENST00000368979 BLMP54132 1417 aaPredicted RBP32.01■■■□□ 2.71
SNX3-203ENST00000368979 USP31Q70CQ4 1352 aa32■■■□□ 2.71
SNX3-203ENST00000368979 SMG6Q86US8 1419 aaKnown RBP31.99■■■□□ 2.71
SNX3-203ENST00000368979 COL3A1P02461 1466 aaPredicted RBP31.99■■■□□ 2.71
SNX3-203ENST00000368979 MARF1Q9Y4F3 1742 aaKnown RBP31.97■■■□□ 2.71
SNX3-203ENST00000368979 WDR43Q15061 677 aaKnown RBP eCLIP31.97■■■□□ 2.71
SNX3-203ENST00000368979 CFAP53Q96M91 514 aa31.97■■■□□ 2.71
SNX3-203ENST00000368979 FBXO41Q8TF61 875 aa31.96■■■□□ 2.71
SNX3-203ENST00000368979 MAP2P11137 1827 aaKnown RBP31.96■■■□□ 2.71
SNX3-203ENST00000368979 ADAMTS8Q9UP79 889 aa31.95■■■□□ 2.7
SNX3-203ENST00000368979 PNPLA6Q8IY17 1366 aa31.94■■■□□ 2.7
SNX3-203ENST00000368979 TRPM3Q9HCF6 1732 aaPredicted RBP31.94■■■□□ 2.7
SNX3-203ENST00000368979 POLKQ9UBT6 870 aa31.93■■■□□ 2.7
SNX3-203ENST00000368979 ZBED9Q6R2W3 1325 aa31.92■■■□□ 2.7
SNX3-203ENST00000368979 PSME1Q06323 249 aa31.9■■■□□ 2.7
SNX3-203ENST00000368979 CDK12Q9NYV4 1490 aaPredicted RBP31.9■■■□□ 2.7
SNX3-203ENST00000368979 FBLN1P23142 703 aa31.9■■■□□ 2.7
SNX3-203ENST00000368979 LTBP4Q8N2S1 1624 aa31.89■■■□□ 2.7
SNX3-203ENST00000368979 FOXO3O43524 673 aa31.89■■■□□ 2.7
SNX3-203ENST00000368979 PAK3O75914 559 aaPredicted RBP31.85■■■□□ 2.69
SNX3-203ENST00000368979 EMILIN1Q9Y6C2 1016 aa31.85■■■□□ 2.69
SNX3-203ENST00000368979 ABTB2Q8N961 1025 aa31.85■■■□□ 2.69
SNX3-203ENST00000368979 NLRP6P59044 892 aa31.84■■■□□ 2.69
SNX3-203ENST00000368979 RRS1Q15050 365 aaKnown RBP31.82■■■□□ 2.68
SNX3-203ENST00000368979 ALS2Q96Q42 1657 aa31.81■■■□□ 2.68
SNX3-203ENST00000368979 PEAK1Q9H792 1746 aa31.81■■■□□ 2.68
SNX3-203ENST00000368979 KRT28Q7Z3Y7 464 aa31.81■■■□□ 2.68
SNX3-203ENST00000368979 XPCQ01831 940 aaPredicted RBP31.8■■■□□ 2.68
SNX3-203ENST00000368979 PPM1GO15355 546 aaPredicted RBP31.78■■■□□ 2.68
SNX3-203ENST00000368979 DIAPH1O60610 1272 aaKnown RBP31.78■■■□□ 2.68
SNX3-203ENST00000368979 NUTM2GQ5VZR2 741 aa31.78■■■□□ 2.68
SNX3-203ENST00000368979 NPHP3Q7Z494 1330 aa31.78■■■□□ 2.68
SNX3-203ENST00000368979 PXDNQ92626 1479 aa31.78■■■□□ 2.68
SNX3-203ENST00000368979 BRINP3Q76B58 766 aa31.77■■■□□ 2.68
SNX3-203ENST00000368979 SLAIN2Q9P270 581 aa31.77■■■□□ 2.68
SNX3-203ENST00000368979 NUDCQ9Y266 331 aa31.77■■■□□ 2.68
SNX3-203ENST00000368979 SLIT3O75094 1523 aa31.76■■■□□ 2.67
SNX3-203ENST00000368979 SBNO1A3KN83 1393 aa31.75■■■□□ 2.67
SNX3-203ENST00000368979 NFAT5O94916 1531 aa31.75■■■□□ 2.67
SNX3-203ENST00000368979 MAP3K19Q56UN5 1328 aa31.73■■■□□ 2.67
SNX3-203ENST00000368979 SENP3-EIF4A1A0A087X0R7 540 aa31.72■■■□□ 2.67
SNX3-203ENST00000368979 CCDC146Q8IYE0 955 aa31.72■■■□□ 2.67
SNX3-203ENST00000368979 SOX12O15370 315 aa31.71■■■□□ 2.67
SNX3-203ENST00000368979 U2AF1L5P0DN76 240 aaPredicted RBP31.71■■■□□ 2.67
SNX3-203ENST00000368979 U2AF1Q01081 240 aaKnown RBP eCLIP31.71■■■□□ 2.67
SNX3-203ENST00000368979 DDX17Q92841 729 aaKnown RBP31.71■■■□□ 2.67
SNX3-203ENST00000368979 KIF24Q5T7B8 1368 aa31.71■■■□□ 2.67
SNX3-203ENST00000368979 USP19O94966 1318 aa31.7■■■□□ 2.66
SNX3-203ENST00000368979 IQSEC2Q5JU85 1478 aa31.7■■■□□ 2.66
SNX3-203ENST00000368979 IL13P35225 146 aa31.7■■■□□ 2.66
SNX3-203ENST00000368979 CERKQ8TCT0 537 aa31.7■■■□□ 2.66
SNX3-203ENST00000368979 TNS3Q68CZ2 1445 aa31.69■■■□□ 2.66
SNX3-203ENST00000368979 U2SURPO15042 1029 aaKnown RBP31.69■■■□□ 2.66
SNX3-203ENST00000368979 FLT4P35916 1363 aa31.68■■■□□ 2.66
SNX3-203ENST00000368979 NHSL1Q5SYE7 1610 aa31.68■■■□□ 2.66
SNX3-203ENST00000368979 LTN1O94822 1766 aa31.67■■■□□ 2.66
SNX3-203ENST00000368979 PHRF1Q9P1Y6 1649 aaKnown RBP31.67■■■□□ 2.66
SNX3-203ENST00000368979 RUNDC1Q96C34 613 aa31.67■■■□□ 2.66
SNX3-203ENST00000368979 KCNH5Q8NCM2 988 aa31.66■■■□□ 2.66
SNX3-203ENST00000368979 MED1Q15648 1581 aaPredicted RBP31.64■■■□□ 2.66
SNX3-203ENST00000368979 RTL1A6NKG5 1358 aa31.64■■■□□ 2.66
SNX3-203ENST00000368979 APAF1O14727 1248 aa31.64■■■□□ 2.66
SNX3-203ENST00000368979 RGPD1P0DJD0 1748 aa31.63■■■□□ 2.65
SNX3-203ENST00000368979 SOS2Q07890 1332 aaPredicted RBP31.63■■■□□ 2.65
SNX3-203ENST00000368979 SPATA31A3Q5VYP0 1347 aa31.63■■■□□ 2.65
SNX3-203ENST00000368979 HSP90AB2PQ58FF8 381 aa31.62■■■□□ 2.65
SNX3-203ENST00000368979 LMOD2Q6P5Q4 547 aa31.62■■■□□ 2.65
SNX3-203ENST00000368979 SALL2Q9Y467 1007 aaPredicted RBP31.62■■■□□ 2.65
SNX3-203ENST00000368979 CRYBG1Q9Y4K1 1723 aa31.61■■■□□ 2.65
SNX3-203ENST00000368979 EIF4A2Q14240 407 aaKnown RBP31.61■■■□□ 2.65
SNX3-203ENST00000368979 PLEKHF1Q96S99 279 aa31.61■■■□□ 2.65
SNX3-203ENST00000368979 AMPHP49418 695 aa31.6■■■□□ 2.65
SNX3-203ENST00000368979 NGEFQ8N5V2 710 aa31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms