RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 GCC1Q96CN9 775 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 RIMBP3CA6NJZ7 1639 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 RIMBP3BA6NNM3 1639 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 RIMBP3Q9UFD9 1639 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 KIF13AQ9H1H9 1805 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 TIAM1Q13009 1591 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 FOXD1Q16676 465 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 C9orf78Q9NZ63 289 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-209ENST00000367257 CDC42BPAQ5VT25 1732 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 GNAI3P08754 354 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 ERC1Q8IUD2 1116 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 PES1O00541 588 aaKnown RBP10.69□□□□□ -0.7
SYNE1-209ENST00000367257 DHX16O60231 1041 aaKnown RBP10.69□□□□□ -0.7
SYNE1-209ENST00000367257 SMARCE1Q969G3 411 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 ZNF428Q96B54 188 aa10.69□□□□□ -0.7
SYNE1-209ENST00000367257 HMGB1P09429 215 aaKnown RBP10.68□□□□□ -0.7
SYNE1-209ENST00000367257 CCDC191Q8NCU4 936 aa10.68□□□□□ -0.7
SYNE1-209ENST00000367257 GTF2E1P29083 439 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-209ENST00000367257 AEBP2Q6ZN18 517 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-209ENST00000367257 SENP3Q9H4L4 574 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-209ENST00000367257 PLEKHH2Q8IVE3 1493 aa10.68□□□□□ -0.7
SYNE1-209ENST00000367257 ZCCHC11Q5TAX3 1644 aaKnown RBP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 HNRNPMP52272 730 aaKnown RBP eCLIP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 CCAR2Q8N163 923 aaKnown RBP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 TCEAL9Q9UHQ7 104 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 CDC42BPBQ9Y5S2 1711 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 CROCC2H7BZ55 1655 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 MCTP1Q6DN14 999 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 LUC7LQ9NQ29 371 aaKnown RBP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 DACH1Q9UI36 760 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 HMGB2P26583 209 aaKnown RBP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 AXDND1Q5T1B0 1012 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 ZNF592Q92610 1267 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 ZNF396Q96N95 335 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 CLGNO14967 610 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 ANKRD1Q15327 319 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 CNTROBQ8N137 903 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 JMYQ8N9B5 988 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 PCMTD1Q96MG8 357 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-209ENST00000367257 PTPRGP23470 1445 aa10.67□□□□□ -0.7
SYNE1-209ENST00000367257 LEKR1Q6ZMV7 388 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 PDCL2Q8N4E4 241 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 COG6Q9Y2V7 657 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 CASKIN1Q8WXD9 1431 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 MLECQ14165 292 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 FILIP1LQ4L180 1135 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 GPATCH11Q8N954 259 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 NUP153P49790 1475 aaKnown RBP10.66□□□□□ -0.7
SYNE1-209ENST00000367257 H0YHG0 523 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 CREBRFQ8IUR6 639 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 JPH4Q96JJ6 628 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 TRIM34Q9BYJ4 488 aa10.66□□□□□ -0.7
SYNE1-209ENST00000367257 C11orf95C9JLR9 678 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-209ENST00000367257 HSP90AB3PQ58FF7 597 aa10.65□□□□□ -0.7
SYNE1-209ENST00000367257 RALYLQ86SE5 291 aaKnown RBP10.65□□□□□ -0.7
SYNE1-209ENST00000367257 NOL8Q76FK4 1167 aaKnown RBP10.65□□□□□ -0.7
SYNE1-209ENST00000367257 FOXD4L1Q9NU39 408 aa10.65□□□□□ -0.7
SYNE1-209ENST00000367257 ABCC2Q92887 1545 aa10.65□□□□□ -0.7
SYNE1-209ENST00000367257 CBX1P83916 185 aa10.65□□□□□ -0.7
SYNE1-209ENST00000367257 SART3Q15020 963 aaKnown RBP10.65□□□□□ -0.7
SYNE1-209ENST00000367257 STK11IPQ8N1F8 1099 aa10.65□□□□□ -0.7
SYNE1-209ENST00000367257 ZNF330Q9Y3S2 320 aaPredicted RBP10.65□□□□□ -0.71
SYNE1-209ENST00000367257 APAF1O14727 1248 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 TRAK2O60296 914 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 RIPK4P57078 832 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 IFT57Q9NWB7 429 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 SMAP1Q8IYB5 467 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-209ENST00000367257 GTPBP4Q9BZE4 634 aaKnown RBP10.64□□□□□ -0.71
SYNE1-209ENST00000367257 TSPY26PQ9H489 355 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 TRAK1Q9UPV9 953 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 KIF2AO00139 706 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-209ENST00000367257 ZRSR2Q15696 482 aaKnown RBP10.64□□□□□ -0.71
SYNE1-209ENST00000367257 VPS53Q5VIR6 699 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 TIGD1Q96MW7 591 aa10.64□□□□□ -0.71
SYNE1-209ENST00000367257 SSR1P43307 286 aaKnown RBP10.63□□□□□ -0.71
SYNE1-209ENST00000367257 GTF2A1P52655 376 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-209ENST00000367257 IQCEQ6IPM2 695 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 GIMAP7Q8NHV1 300 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 CAGE1Q8TC20 777 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 SRCIN1Q9C0H9 1055 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 GRPEL1Q9HAV7 217 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 CCDC9Q9Y3X0 531 aaKnown RBP10.63□□□□□ -0.71
SYNE1-209ENST00000367257 CTDP1Q9Y5B0 961 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-209ENST00000367257 NEFHP12036 1026 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 GAS2L2Q8NHY3 880 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 LRRC9Q6ZRR7 1453 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 ERICH4A6NGS2 130 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 CBFA2T2O43439 604 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 ERLIN2O94905 339 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 ZSCAN30Q86W11 494 aa10.63□□□□□ -0.71
SYNE1-209ENST00000367257 PNISRQ8TF01 805 aaKnown RBP10.63□□□□□ -0.71
SYNE1-209ENST00000367257 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.63□□□□□ -0.71
SYNE1-209ENST00000367257 ERLIN1O75477 346 aa10.62□□□□□ -0.71
SYNE1-209ENST00000367257 TXLNAP40222 546 aa10.62□□□□□ -0.71
SYNE1-209ENST00000367257 MAP3K4Q9Y6R4 1608 aa10.62□□□□□ -0.71
SYNE1-209ENST00000367257 PRM3Q9NNZ6 103 aa10.62□□□□□ -0.71
SYNE1-209ENST00000367257 KINO60870 393 aaKnown RBP10.62□□□□□ -0.71
SYNE1-209ENST00000367257 CLCN1P35523 988 aa10.62□□□□□ -0.71
SYNE1-209ENST00000367257 NFXL1Q6ZNB6 911 aa10.62□□□□□ -0.71
SYNE1-209ENST00000367257 OSCARQ8IYS5 282 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms