RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CSPP1Q1MSJ5 1256 aa10.41□□□□□ -0.74
SYNE1-206ENST00000367253 NGEFQ8N5V2 710 aa10.41□□□□□ -0.74
SYNE1-206ENST00000367253 ZNF622Q969S3 477 aaKnown RBP eCLIP10.41□□□□□ -0.74
SYNE1-206ENST00000367253 FAM43AQ8N2R8 423 aa10.41□□□□□ -0.74
SYNE1-206ENST00000367253 C9orf78Q9NZ63 289 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-206ENST00000367253 EIF4G3O43432 1585 aaKnown RBP10.41□□□□□ -0.74
SYNE1-206ENST00000367253 MYCNP04198 464 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-206ENST00000367253 MIA2Q96PC5 1412 aa10.4□□□□□ -0.74
SYNE1-206ENST00000367253 BANK1Q8NDB2 785 aa10.4□□□□□ -0.74
SYNE1-206ENST00000367253 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.4□□□□□ -0.74
SYNE1-206ENST00000367253 EXOC5O00471 708 aa10.4□□□□□ -0.74
SYNE1-206ENST00000367253 TRDNQ13061 729 aa10.4□□□□□ -0.74
SYNE1-206ENST00000367253 EPRSP07814 1512 aaKnown RBP10.4□□□□□ -0.74
SYNE1-206ENST00000367253 TPM2P07951 284 aa10.4□□□□□ -0.75
SYNE1-206ENST00000367253 TRAK1Q9UPV9 953 aa10.4□□□□□ -0.75
SYNE1-206ENST00000367253 ZSCAN29Q8IWY8 852 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-206ENST00000367253 JDP2Q8WYK2 163 aa10.39□□□□□ -0.75
SYNE1-206ENST00000367253 ANAPC15P60006 121 aa10.39□□□□□ -0.75
SYNE1-206ENST00000367253 DDX54Q8TDD1 881 aaKnown RBP10.39□□□□□ -0.75
SYNE1-206ENST00000367253 SUDS3Q9H7L9 328 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-206ENST00000367253 UGGT2Q9NYU1 1516 aa10.39□□□□□ -0.75
SYNE1-206ENST00000367253 DDX11L8A8MPP1 907 aa10.39□□□□□ -0.75
SYNE1-206ENST00000367253 WDR70Q9NW82 654 aa10.39□□□□□ -0.75
SYNE1-206ENST00000367253 DISP3Q9P2K9 1392 aa10.39□□□□□ -0.75
SYNE1-206ENST00000367253 ZNF772Q68DY9 489 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-206ENST00000367253 SLC52A1Q9NWF4 448 aa10.39□□□□□ -0.75
SYNE1-206ENST00000367253 WDR78Q5VTH9 848 aa10.38□□□□□ -0.75
SYNE1-206ENST00000367253 TSPYL1Q9H0U9 437 aa10.38□□□□□ -0.75
SYNE1-206ENST00000367253 ZBTB24O43167 697 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-206ENST00000367253 CCDC70Q6NSX1 233 aa10.38□□□□□ -0.75
SYNE1-206ENST00000367253 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-206ENST00000367253 NOL8Q76FK4 1167 aaKnown RBP10.38□□□□□ -0.75
SYNE1-206ENST00000367253 CABP4P57796 275 aa10.38□□□□□ -0.75
SYNE1-206ENST00000367253 KIF22Q14807 665 aa10.38□□□□□ -0.75
SYNE1-206ENST00000367253 NUP160Q12769 1436 aa10.38□□□□□ -0.75
SYNE1-206ENST00000367253 CCDC27Q2M243 656 aa10.38□□□□□ -0.75
SYNE1-206ENST00000367253 CWC15Q9P013 229 aaKnown RBP10.37□□□□□ -0.75
SYNE1-206ENST00000367253 MINK1Q8N4C8 1332 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-206ENST00000367253 CTTNBP2Q8WZ74 1663 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 STARD3NLO95772 234 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 CCAR2Q8N163 923 aaKnown RBP10.37□□□□□ -0.75
SYNE1-206ENST00000367253 PCF11O94913 1555 aaKnown RBP10.37□□□□□ -0.75
SYNE1-206ENST00000367253 THOC2Q8NI27 1593 aaKnown RBP10.37□□□□□ -0.75
SYNE1-206ENST00000367253 SLC4A3P48751 1232 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 DZIP1Q86YF9 867 aaKnown RBP10.37□□□□□ -0.75
SYNE1-206ENST00000367253 HDAC9Q9UKV0 1011 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 TBC1D2BQ9UPU7 963 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 A0A087WZG4 1122 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 ERICH4A6NGS2 130 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 H0YHG0 523 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 VTI1AQ96AJ9 217 aa10.37□□□□□ -0.75
SYNE1-206ENST00000367253 GIMAP7Q8NHV1 300 aa10.36□□□□□ -0.75
SYNE1-206ENST00000367253 LPXNO60711 386 aa10.36□□□□□ -0.75
SYNE1-206ENST00000367253 GTF2A1P52655 376 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-206ENST00000367253 KCNH5Q8NCM2 988 aa10.36□□□□□ -0.75
SYNE1-206ENST00000367253 SLC4A10Q6U841 1118 aa10.36□□□□□ -0.75
SYNE1-206ENST00000367253 ATF7IPQ6VMQ6 1270 aa10.36□□□□□ -0.75
SYNE1-206ENST00000367253 SARNPP82979 210 aaKnown RBP10.36□□□□□ -0.75
SYNE1-206ENST00000367253 DPY19L2Q6NUT2 758 aa10.36□□□□□ -0.75
SYNE1-206ENST00000367253 RPGRQ92834 1020 aaKnown RBP10.36□□□□□ -0.75
SYNE1-206ENST00000367253 C8orf37Q96NL8 207 aa10.36□□□□□ -0.75
SYNE1-206ENST00000367253 B4DLN1 442 aa10.35□□□□□ -0.75
SYNE1-206ENST00000367253 MRPL12P52815 198 aaKnown RBP10.35□□□□□ -0.75
SYNE1-206ENST00000367253 DRC1Q96MC2 740 aa10.35□□□□□ -0.75
SYNE1-206ENST00000367253 SLF2Q8IX21 1173 aa10.35□□□□□ -0.75
SYNE1-206ENST00000367253 CCDC191Q8NCU4 936 aa10.35□□□□□ -0.75
SYNE1-206ENST00000367253 CCDC97Q96F63 343 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-206ENST00000367253 SETSIPP0DME0 302 aa10.35□□□□□ -0.75
SYNE1-206ENST00000367253 RIC3Q7Z5B4 369 aa10.35□□□□□ -0.75
SYNE1-206ENST00000367253 ROCK2O75116 1388 aaKnown RBP10.35□□□□□ -0.75
SYNE1-206ENST00000367253 SKOR2Q2VWA4 1001 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-206ENST00000367253 PBRM1Q86U86 1689 aa10.34□□□□□ -0.75
SYNE1-206ENST00000367253 CGNL1Q0VF96 1302 aa10.34□□□□□ -0.75
SYNE1-206ENST00000367253 DESP17661 470 aa10.34□□□□□ -0.75
SYNE1-206ENST00000367253 TRIM29Q14134 588 aa10.34□□□□□ -0.75
SYNE1-206ENST00000367253 TRERF1Q96PN7 1200 aa10.34□□□□□ -0.75
SYNE1-206ENST00000367253 DNAJC2Q99543 621 aaKnown RBP10.34□□□□□ -0.75
SYNE1-206ENST00000367253 SMARCC1Q92922 1105 aaPredicted RBP10.34□□□□□ -0.75
SYNE1-206ENST00000367253 RBM28Q9NW13 759 aaKnown RBP10.34□□□□□ -0.75
SYNE1-206ENST00000367253 AKNAQ7Z591 1439 aa10.34□□□□□ -0.75
SYNE1-206ENST00000367253 ODF2Q5BJF6 829 aa10.34□□□□□ -0.75
SYNE1-206ENST00000367253 LRRC59Q96AG4 307 aaKnown RBP10.33□□□□□ -0.76
SYNE1-206ENST00000367253 ST5P78524 1137 aa10.33□□□□□ -0.76
SYNE1-206ENST00000367253 MPHOSPH9Q99550 1183 aa10.33□□□□□ -0.76
SYNE1-206ENST00000367253 SUPT6HQ7KZ85 1726 aaKnown RBP10.33□□□□□ -0.76
SYNE1-206ENST00000367253 CCER2I3L3R5 266 aa10.33□□□□□ -0.76
SYNE1-206ENST00000367253 SART3Q15020 963 aaKnown RBP10.33□□□□□ -0.76
SYNE1-206ENST00000367253 FAM177BA6PVY3 158 aa10.33□□□□□ -0.76
SYNE1-206ENST00000367253 HSP90AB4PQ58FF6 505 aa10.33□□□□□ -0.76
SYNE1-206ENST00000367253 ZNF692Q9BU19 519 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-206ENST00000367253 PLB1Q6P1J6 1458 aa10.32□□□□□ -0.76
SYNE1-206ENST00000367253 G3BP1Q13283 466 aaKnown RBP eCLIP10.32□□□□□ -0.76
SYNE1-206ENST00000367253 EIF2S2P20042 333 aaKnown RBP10.32□□□□□ -0.76
SYNE1-206ENST00000367253 CDR1P51861 262 aa10.32□□□□□ -0.76
SYNE1-206ENST00000367253 TICAM2Q86XR7 235 aa10.32□□□□□ -0.76
SYNE1-206ENST00000367253 ACBD3Q9H3P7 528 aa10.32□□□□□ -0.76
SYNE1-206ENST00000367253 ARGLU1Q9NWB6 273 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-206ENST00000367253 PNISRQ8TF01 805 aaKnown RBP10.32□□□□□ -0.76
SYNE1-206ENST00000367253 MPHOSPH8Q99549 860 aa10.32□□□□□ -0.76
SYNE1-206ENST00000367253 PLEKHH2Q8IVE3 1493 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms