RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 NME9Q86XW9 330 aa25.08■■□□□ 1.61
CLN3-204ENST00000357857 SSH2Q76I76 1423 aa25.08■■□□□ 1.61
CLN3-204ENST00000357857 PHF8Q9UPP1 1060 aa25.07■■□□□ 1.6
CLN3-204ENST00000357857 DCCP43146 1447 aa25.07■■□□□ 1.6
CLN3-204ENST00000357857 ZNF335Q9H4Z2 1342 aaPredicted RBP25.06■■□□□ 1.6
CLN3-204ENST00000357857 LRRC7Q96NW7 1537 aa25.04■■□□□ 1.6
CLN3-204ENST00000357857 TTC21AQ8NDW8 1320 aa25.04■■□□□ 1.6
CLN3-204ENST00000357857 MTHFSP49914 203 aa25.03■■□□□ 1.6
CLN3-204ENST00000357857 ESCO1Q5FWF5 840 aa25.03■■□□□ 1.6
CLN3-204ENST00000357857 ATF3P18847 181 aa25.03■■□□□ 1.6
CLN3-204ENST00000357857 COG3Q96JB2 828 aa25.03■■□□□ 1.6
CLN3-204ENST00000357857 MAP2P11137 1827 aaKnown RBP25.02■■□□□ 1.6
CLN3-204ENST00000357857 SCAF1Q9H7N4 1312 aaKnown RBP25.02■■□□□ 1.6
CLN3-204ENST00000357857 ZRANB1Q9UGI0 708 aa25.02■■□□□ 1.6
CLN3-204ENST00000357857 INSRP06213 1382 aa25.02■■□□□ 1.6
CLN3-204ENST00000357857 MSH6P52701 1360 aa25.02■■□□□ 1.6
CLN3-204ENST00000357857 KIF1AQ12756 1690 aa25.01■■□□□ 1.59
CLN3-204ENST00000357857 C1orf167Q5SNV9 1468 aa25.01■■□□□ 1.59
CLN3-204ENST00000357857 WDR43Q15061 677 aaKnown RBP eCLIP25.01■■□□□ 1.59
CLN3-204ENST00000357857 CFAP53Q96M91 514 aa25■■□□□ 1.59
CLN3-204ENST00000357857 SHPRHQ149N8 1683 aa25■■□□□ 1.59
CLN3-204ENST00000357857 MST1RQ04912 1400 aa24.99■■□□□ 1.59
CLN3-204ENST00000357857 PIK3C2AO00443 1686 aa24.99■■□□□ 1.59
CLN3-204ENST00000357857 OVOS2A0A0J9YW53 1432 aa24.98■■□□□ 1.59
CLN3-204ENST00000357857 OVOS2Q6IE36 1432 aa24.98■■□□□ 1.59
CLN3-204ENST00000357857 CADPS2Q86UW7 1296 aa24.98■■□□□ 1.59
CLN3-204ENST00000357857 ORAI2Q96SN7 254 aa24.98■■□□□ 1.59
CLN3-204ENST00000357857 BLMP54132 1417 aaPredicted RBP24.97■■□□□ 1.59
CLN3-204ENST00000357857 ADAMTS8Q9UP79 889 aa24.96■■□□□ 1.59
CLN3-204ENST00000357857 AATKQ6ZMQ8 1374 aa24.95■■□□□ 1.59
CLN3-204ENST00000357857 USP54Q70EL1 1684 aa24.95■■□□□ 1.59
CLN3-204ENST00000357857 ZBED9Q6R2W3 1325 aa24.94■■□□□ 1.58
CLN3-204ENST00000357857 USP31Q70CQ4 1352 aa24.94■■□□□ 1.58
CLN3-204ENST00000357857 PSME1Q06323 249 aa24.93■■□□□ 1.58
CLN3-204ENST00000357857 COL3A1P02461 1466 aaPredicted RBP24.92■■□□□ 1.58
CLN3-204ENST00000357857 MARF1Q9Y4F3 1742 aaKnown RBP24.92■■□□□ 1.58
CLN3-204ENST00000357857 POLKQ9UBT6 870 aa24.92■■□□□ 1.58
CLN3-204ENST00000357857 SMG6Q86US8 1419 aaKnown RBP24.91■■□□□ 1.58
CLN3-204ENST00000357857 FBLN1P23142 703 aa24.91■■□□□ 1.58
CLN3-204ENST00000357857 PAK3O75914 559 aaPredicted RBP24.9■■□□□ 1.58
CLN3-204ENST00000357857 PNPLA6Q8IY17 1366 aa24.89■■□□□ 1.58
CLN3-204ENST00000357857 FOXO3O43524 673 aa24.89■■□□□ 1.57
CLN3-204ENST00000357857 TRPM3Q9HCF6 1732 aaPredicted RBP24.88■■□□□ 1.57
CLN3-204ENST00000357857 CDK12Q9NYV4 1490 aaPredicted RBP24.87■■□□□ 1.57
CLN3-204ENST00000357857 ABTB2Q8N961 1025 aa24.87■■□□□ 1.57
CLN3-204ENST00000357857 NLRP6P59044 892 aa24.86■■□□□ 1.57
CLN3-204ENST00000357857 EMILIN1Q9Y6C2 1016 aa24.86■■□□□ 1.57
CLN3-204ENST00000357857 PPM1GO15355 546 aaPredicted RBP24.86■■□□□ 1.57
CLN3-204ENST00000357857 RRS1Q15050 365 aaKnown RBP24.85■■□□□ 1.57
CLN3-204ENST00000357857 NUDCQ9Y266 331 aa24.84■■□□□ 1.57
CLN3-204ENST00000357857 KRT28Q7Z3Y7 464 aa24.83■■□□□ 1.57
CLN3-204ENST00000357857 SENP3-EIF4A1A0A087X0R7 540 aa24.83■■□□□ 1.57
CLN3-204ENST00000357857 DIAPH1O60610 1272 aaKnown RBP24.83■■□□□ 1.57
CLN3-204ENST00000357857 XPCQ01831 940 aaPredicted RBP24.83■■□□□ 1.57
CLN3-204ENST00000357857 NUTM2GQ5VZR2 741 aa24.83■■□□□ 1.57
CLN3-204ENST00000357857 PEAK1Q9H792 1746 aa24.81■■□□□ 1.56
CLN3-204ENST00000357857 LTBP4Q8N2S1 1624 aa24.8■■□□□ 1.56
CLN3-204ENST00000357857 SOX12O15370 315 aa24.8■■□□□ 1.56
CLN3-204ENST00000357857 CCDC146Q8IYE0 955 aa24.8■■□□□ 1.56
CLN3-204ENST00000357857 U2AF1L5P0DN76 240 aaPredicted RBP24.79■■□□□ 1.56
CLN3-204ENST00000357857 U2AF1Q01081 240 aaKnown RBP eCLIP24.79■■□□□ 1.56
CLN3-204ENST00000357857 ALS2Q96Q42 1657 aa24.79■■□□□ 1.56
CLN3-204ENST00000357857 NPHP3Q7Z494 1330 aa24.79■■□□□ 1.56
CLN3-204ENST00000357857 SLAIN2Q9P270 581 aa24.78■■□□□ 1.56
CLN3-204ENST00000357857 U2SURPO15042 1029 aaKnown RBP24.78■■□□□ 1.56
CLN3-204ENST00000357857 BRINP3Q76B58 766 aa24.77■■□□□ 1.56
CLN3-204ENST00000357857 SALL2Q9Y467 1007 aaPredicted RBP24.76■■□□□ 1.55
CLN3-204ENST00000357857 MAP3K19Q56UN5 1328 aa24.75■■□□□ 1.55
CLN3-204ENST00000357857 SBNO1A3KN83 1393 aa24.75■■□□□ 1.55
CLN3-204ENST00000357857 LTN1O94822 1766 aa24.75■■□□□ 1.55
CLN3-204ENST00000357857 DDX17Q92841 729 aaKnown RBP24.75■■□□□ 1.55
CLN3-204ENST00000357857 RUNDC1Q96C34 613 aa24.75■■□□□ 1.55
CLN3-204ENST00000357857 PXDNQ92626 1479 aa24.75■■□□□ 1.55
CLN3-204ENST00000357857 IL13P35225 146 aa24.73■■□□□ 1.55
CLN3-204ENST00000357857 SLIT3O75094 1523 aa24.73■■□□□ 1.55
CLN3-204ENST00000357857 NFAT5O94916 1531 aa24.73■■□□□ 1.55
CLN3-204ENST00000357857 APAF1O14727 1248 aa24.72■■□□□ 1.55
CLN3-204ENST00000357857 LMOD2Q6P5Q4 547 aa24.72■■□□□ 1.55
CLN3-204ENST00000357857 FLT4P35916 1363 aa24.72■■□□□ 1.55
CLN3-204ENST00000357857 KIF24Q5T7B8 1368 aa24.71■■□□□ 1.55
CLN3-204ENST00000357857 KCNH5Q8NCM2 988 aa24.71■■□□□ 1.55
CLN3-204ENST00000357857 AMPHP49418 695 aa24.7■■□□□ 1.54
CLN3-204ENST00000357857 IQSEC2Q5JU85 1478 aa24.7■■□□□ 1.54
CLN3-204ENST00000357857 USP19O94966 1318 aa24.69■■□□□ 1.54
CLN3-204ENST00000357857 TNS3Q68CZ2 1445 aa24.69■■□□□ 1.54
CLN3-204ENST00000357857 NGEFQ8N5V2 710 aa24.69■■□□□ 1.54
CLN3-204ENST00000357857 NHSL1Q5SYE7 1610 aa24.68■■□□□ 1.54
CLN3-204ENST00000357857 PDE3BQ13370 1112 aa24.68■■□□□ 1.54
CLN3-204ENST00000357857 HSP90AB2PQ58FF8 381 aa24.68■■□□□ 1.54
CLN3-204ENST00000357857 PNNQ9H307 717 aaKnown RBP24.68■■□□□ 1.54
CLN3-204ENST00000357857 EIF4A2Q14240 407 aaKnown RBP24.67■■□□□ 1.54
CLN3-204ENST00000357857 RTL1A6NKG5 1358 aa24.67■■□□□ 1.54
CLN3-204ENST00000357857 PHRF1Q9P1Y6 1649 aaKnown RBP24.66■■□□□ 1.54
CLN3-204ENST00000357857 RGPD1P0DJD0 1748 aa24.66■■□□□ 1.54
CLN3-204ENST00000357857 FCHSD2O94868 740 aa24.66■■□□□ 1.54
CLN3-204ENST00000357857 PLEKHF1Q96S99 279 aa24.66■■□□□ 1.54
CLN3-204ENST00000357857 SPATA31A3Q5VYP0 1347 aa24.65■■□□□ 1.54
CLN3-204ENST00000357857 TCP11L2Q8N4U5 519 aa24.65■■□□□ 1.54
CLN3-204ENST00000357857 MED1Q15648 1581 aaPredicted RBP24.65■■□□□ 1.54
CLN3-204ENST00000357857 GCP02774 474 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms