RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 GYS2P54840 703 aa12.7□□□□□ -0.38
PCDH1-202ENST00000357517 HNRNPH2P55795 449 aaKnown RBP12.7□□□□□ -0.38
PCDH1-202ENST00000357517 C10orf67Q8IYJ2 551 aa12.7□□□□□ -0.38
PCDH1-202ENST00000357517 IFT57Q9NWB7 429 aa12.7□□□□□ -0.38
PCDH1-202ENST00000357517 CTNNA3Q9UI47 895 aa12.7□□□□□ -0.38
PCDH1-202ENST00000357517 SNAPC4Q5SXM2 1469 aa12.7□□□□□ -0.38
PCDH1-202ENST00000357517 PRDM2Q13029 1718 aa12.7□□□□□ -0.38
PCDH1-202ENST00000357517 DISP3Q9P2K9 1392 aa12.69□□□□□ -0.38
PCDH1-202ENST00000357517 SOX12O15370 315 aa12.69□□□□□ -0.38
PCDH1-202ENST00000357517 MVPQ14764 893 aaKnown RBP12.69□□□□□ -0.38
PCDH1-202ENST00000357517 ANKRD7Q92527 254 aa12.69□□□□□ -0.38
PCDH1-202ENST00000357517 NCOA3Q9Y6Q9 1424 aa12.69□□□□□ -0.38
PCDH1-202ENST00000357517 TBC1D9Q6ZT07 1266 aa12.68□□□□□ -0.38
PCDH1-202ENST00000357517 DZIP1LQ8IYY4 767 aaKnown RBP12.68□□□□□ -0.38
PCDH1-202ENST00000357517 KRT222Q8N1A0 295 aa12.68□□□□□ -0.38
PCDH1-202ENST00000357517 GTF3C6Q969F1 213 aa12.68□□□□□ -0.38
PCDH1-202ENST00000357517 C1orf115Q9H7X2 142 aa12.68□□□□□ -0.38
PCDH1-202ENST00000357517 FEZ2Q9UHY8 353 aaPredicted RBP12.68□□□□□ -0.38
PCDH1-202ENST00000357517 TDRD9Q8NDG6 1382 aaKnown RBP12.68□□□□□ -0.38
PCDH1-202ENST00000357517 DRC7Q8IY82 874 aa12.68□□□□□ -0.38
PCDH1-202ENST00000357517 TRMT2AQ8IZ69 625 aaKnown RBP12.68□□□□□ -0.38
PCDH1-202ENST00000357517 SMC4Q9NTJ3 1288 aa12.68□□□□□ -0.38
PCDH1-202ENST00000357517 POLA1P09884 1462 aaPredicted RBP12.68□□□□□ -0.38
PCDH1-202ENST00000357517 PLEKHH2Q8IVE3 1493 aa12.68□□□□□ -0.38
PCDH1-202ENST00000357517 APBB1O00213 710 aa12.67□□□□□ -0.38
PCDH1-202ENST00000357517 POLR3GO15318 223 aaPredicted RBP12.67□□□□□ -0.38
PCDH1-202ENST00000357517 GTF2A1P52655 376 aaPredicted RBP12.67□□□□□ -0.38
PCDH1-202ENST00000357517 TMF1P82094 1093 aa12.67□□□□□ -0.38
PCDH1-202ENST00000357517 VGFO15240 615 aaPredicted RBP12.67□□□□□ -0.38
PCDH1-202ENST00000357517 DDX41Q9UJV9 622 aaKnown RBP12.67□□□□□ -0.38
PCDH1-202ENST00000357517 SMARCA5O60264 1052 aaPredicted RBP12.67□□□□□ -0.38
PCDH1-202ENST00000357517 GADD45BO75293 160 aaPredicted RBP12.67□□□□□ -0.38
PCDH1-202ENST00000357517 NEK11Q8NG66 645 aa12.67□□□□□ -0.38
PCDH1-202ENST00000357517 CAMSAP2Q08AD1 1489 aa12.67□□□□□ -0.38
PCDH1-202ENST00000357517 RAD51AP2Q09MP3 1159 aa12.66□□□□□ -0.38
PCDH1-202ENST00000357517 TSR2Q969E8 191 aaKnown RBP12.66□□□□□ -0.38
PCDH1-202ENST00000357517 TRIM66O15016 1216 aa12.66□□□□□ -0.38
PCDH1-202ENST00000357517 DTNBO60941 627 aa12.66□□□□□ -0.38
PCDH1-202ENST00000357517 TMED8Q6PL24 325 aaPredicted RBP12.66□□□□□ -0.38
PCDH1-202ENST00000357517 ZKSCAN2Q63HK3 967 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 THOC2Q8NI27 1593 aaKnown RBP12.65□□□□□ -0.38
PCDH1-202ENST00000357517 SUPT6HQ7KZ85 1726 aaKnown RBP12.65□□□□□ -0.38
PCDH1-202ENST00000357517 ABCA10Q8WWZ4 1543 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 KIF18AQ8NI77 898 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 CHMP3Q9Y3E7 222 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 KDM5CP41229 1560 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 CTTNBP2Q8WZ74 1663 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 CCDC112Q8NEF3 446 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 ZDHHC9Q9Y397 364 aa12.65□□□□□ -0.38
PCDH1-202ENST00000357517 HECW1Q76N89 1606 aa12.65□□□□□ -0.39
PCDH1-202ENST00000357517 VIRMAQ69YN4 1812 aaKnown RBP12.64□□□□□ -0.39
PCDH1-202ENST00000357517 POLR1AO95602 1720 aaPredicted RBP12.64□□□□□ -0.39
PCDH1-202ENST00000357517 LRMPQ12912 555 aa12.64□□□□□ -0.39
PCDH1-202ENST00000357517 NOL10Q9BSC4 688 aaKnown RBP12.64□□□□□ -0.39
PCDH1-202ENST00000357517 DNAJC5BQ9UF47 199 aa12.64□□□□□ -0.39
PCDH1-202ENST00000357517 TOPBP1Q92547 1522 aa12.63□□□□□ -0.39
PCDH1-202ENST00000357517 PTGS1P23219 599 aa12.63□□□□□ -0.39
PCDH1-202ENST00000357517 CHD1LQ86WJ1 897 aa12.63□□□□□ -0.39
PCDH1-202ENST00000357517 KIAA1524Q8TCG1 905 aa12.63□□□□□ -0.39
PCDH1-202ENST00000357517 KCNF1Q9H3M0 494 aa12.63□□□□□ -0.39
PCDH1-202ENST00000357517 SYAP1Q96A49 352 aaPredicted RBP12.62□□□□□ -0.39
PCDH1-202ENST00000357517 EHBP1L1Q8N3D4 1523 aa12.62□□□□□ -0.39
PCDH1-202ENST00000357517 MBD3O95983 291 aa12.62□□□□□ -0.39
PCDH1-202ENST00000357517 GRIN2BQ13224 1484 aa12.62□□□□□ -0.39
PCDH1-202ENST00000357517 TPD52L1Q16890 204 aaPredicted RBP12.62□□□□□ -0.39
PCDH1-202ENST00000357517 KMT5BQ4FZB7 885 aa12.62□□□□□ -0.39
PCDH1-202ENST00000357517 NESP48681 1621 aa12.62□□□□□ -0.39
PCDH1-202ENST00000357517 LRRIQ1Q96JM4 1722 aa12.62□□□□□ -0.39
PCDH1-202ENST00000357517 TULP2O00295 520 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 PSEN1P49768 467 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 DRC1Q96MC2 740 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 DNMBPQ6XZF7 1577 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 NUP155O75694 1391 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 SLC20A2Q08357 652 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 GIMAP6Q6P9H5 292 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 TCP11L2Q8N4U5 519 aa12.61□□□□□ -0.39
PCDH1-202ENST00000357517 TRIM27P14373 513 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 SART3Q15020 963 aaKnown RBP12.6□□□□□ -0.39
PCDH1-202ENST00000357517 TMEM57Q8N5G2 664 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 SPTLC3Q9NUV7 552 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 CUL7Q14999 1698 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 CTIFO43310 598 aaKnown RBP12.6□□□□□ -0.39
PCDH1-202ENST00000357517 ELF2Q15723 593 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 RASSF4Q9H2L5 321 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 MORC2Q9Y6X9 1032 aaPredicted RBP12.6□□□□□ -0.39
PCDH1-202ENST00000357517 MAGI3Q5TCQ9 1506 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 CC2D2AQ9P2K1 1620 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 SYT10Q6XYQ8 523 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 SYTL4Q96C24 671 aaPredicted RBP12.6□□□□□ -0.39
PCDH1-202ENST00000357517 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.6□□□□□ -0.39
PCDH1-202ENST00000357517 UGGT2Q9NYU1 1516 aa12.6□□□□□ -0.39
PCDH1-202ENST00000357517 KRBA2Q6ZNG9 492 aa12.59□□□□□ -0.39
PCDH1-202ENST00000357517 CLEC17AQ6ZS10 378 aa12.59□□□□□ -0.39
PCDH1-202ENST00000357517 ST18O60284 1047 aa12.59□□□□□ -0.39
PCDH1-202ENST00000357517 HSP90B1P14625 803 aaKnown RBP12.59□□□□□ -0.39
PCDH1-202ENST00000357517 NINLQ9Y2I6 1382 aa12.59□□□□□ -0.39
PCDH1-202ENST00000357517 MMP14P50281 582 aa12.59□□□□□ -0.39
PCDH1-202ENST00000357517 CNKSR2Q8WXI2 1034 aa12.59□□□□□ -0.39
PCDH1-202ENST00000357517 TESK2Q96S53 571 aa12.59□□□□□ -0.39
PCDH1-202ENST00000357517 ZNF215Q9UL58 517 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms