RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CNTLNQ9NXG0 1405 aa11.2□□□□□ -0.62
VPS13A-201ENST00000355766 TESPA1A2RU30 521 aaPredicted RBP11.2□□□□□ -0.62
VPS13A-201ENST00000355766 DNAJB2P25686 324 aa11.2□□□□□ -0.62
VPS13A-201ENST00000355766 MED1Q15648 1581 aaPredicted RBP11.2□□□□□ -0.62
VPS13A-201ENST00000355766 RANGAP1P46060 587 aaPredicted RBP11.19□□□□□ -0.62
VPS13A-201ENST00000355766 SLC4A3P48751 1232 aa11.19□□□□□ -0.62
VPS13A-201ENST00000355766 SETD1BQ9UPS6 1966 aaKnown RBP11.19□□□□□ -0.62
VPS13A-201ENST00000355766 NPATQ14207 1427 aa11.18□□□□□ -0.62
VPS13A-201ENST00000355766 ZNF335Q9H4Z2 1342 aaPredicted RBP11.18□□□□□ -0.62
VPS13A-201ENST00000355766 UBAP1LF5GYI3 381 aa11.18□□□□□ -0.62
VPS13A-201ENST00000355766 COPS2P61201 443 aa11.18□□□□□ -0.62
VPS13A-201ENST00000355766 AFAP1Q8N556 730 aa11.18□□□□□ -0.62
VPS13A-201ENST00000355766 TMEM134Q9H6X4 195 aa11.18□□□□□ -0.62
VPS13A-201ENST00000355766 RCCD1A6NED2 376 aa11.17□□□□□ -0.62
VPS13A-201ENST00000355766 HAP1P54257 671 aaPredicted RBP11.17□□□□□ -0.62
VPS13A-201ENST00000355766 RBM26Q5T8P6 1007 aaKnown RBP11.17□□□□□ -0.62
VPS13A-201ENST00000355766 NKX2-3Q8TAU0 364 aa11.17□□□□□ -0.62
VPS13A-201ENST00000355766 ABCC1P33527 1531 aa11.17□□□□□ -0.62
VPS13A-201ENST00000355766 PLA2R1Q13018 1463 aa11.17□□□□□ -0.62
VPS13A-201ENST00000355766 MROH2AA6NES4 1674 aa11.17□□□□□ -0.62
VPS13A-201ENST00000355766 PPP1R18Q6NYC8 613 aa11.16□□□□□ -0.62
VPS13A-201ENST00000355766 ESF1Q9H501 851 aaKnown RBP11.16□□□□□ -0.62
VPS13A-201ENST00000355766 ZNF142P52746 1687 aaPredicted RBP11.16□□□□□ -0.62
VPS13A-201ENST00000355766 TROQ12816 1431 aaPredicted RBP11.16□□□□□ -0.62
VPS13A-201ENST00000355766 TCOF1Q13428 1488 aaKnown RBP11.15□□□□□ -0.62
VPS13A-201ENST00000355766 MYO3AQ8NEV4 1616 aa11.15□□□□□ -0.62
VPS13A-201ENST00000355766 CLIP1P30622 1438 aa11.14□□□□□ -0.63
VPS13A-201ENST00000355766 PREX2Q70Z35 1606 aa11.13□□□□□ -0.63
VPS13A-201ENST00000355766 FMN1Q68DA7 1419 aa11.13□□□□□ -0.63
VPS13A-201ENST00000355766 SMYD5Q6GMV2 418 aa11.13□□□□□ -0.63
VPS13A-201ENST00000355766 KDM2AQ9Y2K7 1162 aa11.13□□□□□ -0.63
VPS13A-201ENST00000355766 ITSN2Q9NZM3 1697 aa11.13□□□□□ -0.63
VPS13A-201ENST00000355766 CEP170BQ9Y4F5 1589 aaPredicted RBP11.12□□□□□ -0.63
VPS13A-201ENST00000355766 HIC1Q14526 733 aa11.12□□□□□ -0.63
VPS13A-201ENST00000355766 PRR14Q9BWN1 585 aa11.12□□□□□ -0.63
VPS13A-201ENST00000355766 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.12□□□□□ -0.63
VPS13A-201ENST00000355766 CDK11AQ9UQ88 783 aaPredicted RBP11.12□□□□□ -0.63
VPS13A-201ENST00000355766 KIDINS220Q9ULH0 1771 aa11.11□□□□□ -0.63
VPS13A-201ENST00000355766 PXYLP1Q8TE99 480 aa11.11□□□□□ -0.63
VPS13A-201ENST00000355766 PCDHB3Q9Y5E6 796 aa11.11□□□□□ -0.63
VPS13A-201ENST00000355766 CDC42BPBQ9Y5S2 1711 aa11.1□□□□□ -0.63
VPS13A-201ENST00000355766 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.1□□□□□ -0.63
VPS13A-201ENST00000355766 ZPR1O75312 459 aa11.1□□□□□ -0.63
VPS13A-201ENST00000355766 OATP04181 439 aa11.1□□□□□ -0.63
VPS13A-201ENST00000355766 PRKD2Q9BZL6 878 aa11.1□□□□□ -0.63
VPS13A-201ENST00000355766 ZMYM3Q14202 1370 aa11.09□□□□□ -0.63
VPS13A-201ENST00000355766 FECHP22830 423 aa11.09□□□□□ -0.63
VPS13A-201ENST00000355766 HSPA1LP34931 641 aa11.09□□□□□ -0.63
VPS13A-201ENST00000355766 BLOC1S3Q6QNY0 202 aa11.09□□□□□ -0.63
VPS13A-201ENST00000355766 GPR37O15354 613 aa11.08□□□□□ -0.64
VPS13A-201ENST00000355766 SLC10A3P09131 477 aa11.08□□□□□ -0.64
VPS13A-201ENST00000355766 CPS1P31327 1500 aa11.08□□□□□ -0.64
VPS13A-201ENST00000355766 PTPRKQ15262 1439 aa11.08□□□□□ -0.64
VPS13A-201ENST00000355766 PLXNC1O60486 1568 aa11.07□□□□□ -0.64
VPS13A-201ENST00000355766 SAMD9LQ8IVG5 1584 aa11.07□□□□□ -0.64
VPS13A-201ENST00000355766 ARHGAP35Q9NRY4 1499 aa11.07□□□□□ -0.64
VPS13A-201ENST00000355766 GNPATO15228 680 aa11.07□□□□□ -0.64
VPS13A-201ENST00000355766 CFHP08603 1231 aa11.07□□□□□ -0.64
VPS13A-201ENST00000355766 METTL3Q86U44 580 aaKnown RBP11.07□□□□□ -0.64
VPS13A-201ENST00000355766 CLTCQ00610 1675 aaKnown RBP11.06□□□□□ -0.64
VPS13A-201ENST00000355766 ACTN4O43707 911 aaKnown RBP11.06□□□□□ -0.64
VPS13A-201ENST00000355766 KMT5BQ4FZB7 885 aa11.06□□□□□ -0.64
VPS13A-201ENST00000355766 ATP1B4Q9UN42 357 aaPredicted RBP11.06□□□□□ -0.64
VPS13A-201ENST00000355766 SUPT6HQ7KZ85 1726 aaKnown RBP11.05□□□□□ -0.64
VPS13A-201ENST00000355766 LRRIQ1Q96JM4 1722 aa11.05□□□□□ -0.64
VPS13A-201ENST00000355766 A2ML1A8K2U0 1454 aa11.05□□□□□ -0.64
VPS13A-201ENST00000355766 SYCP2Q9BX26 1530 aa11.04□□□□□ -0.64
VPS13A-201ENST00000355766 NEURL4Q96JN8 1562 aa11.04□□□□□ -0.64
VPS13A-201ENST00000355766 GGCXP38435 758 aa11.04□□□□□ -0.64
VPS13A-201ENST00000355766 PIP4K2BP78356 416 aa11.04□□□□□ -0.64
VPS13A-201ENST00000355766 V9GY48 417 aaPredicted RBP11.04□□□□□ -0.64
VPS13A-201ENST00000355766 ATP7AQ04656 1500 aa11.04□□□□□ -0.64
VPS13A-201ENST00000355766 INO80Q9ULG1 1556 aaPredicted RBP11.03□□□□□ -0.64
VPS13A-201ENST00000355766 ALKQ9UM73 1620 aa11.03□□□□□ -0.64
VPS13A-201ENST00000355766 TOM1O60784 492 aa11.03□□□□□ -0.64
VPS13A-201ENST00000355766 Q6ZNB5 142 aa11.03□□□□□ -0.64
VPS13A-201ENST00000355766 DNMT1P26358 1616 aaKnown RBP11.02□□□□□ -0.64
VPS13A-201ENST00000355766 A2MP01023 1474 aa11.02□□□□□ -0.65
VPS13A-201ENST00000355766 CCDC18Q5T9S5 1454 aa11.02□□□□□ -0.65
VPS13A-201ENST00000355766 SHANK2Q9UPX8 1470 aa11.02□□□□□ -0.65
VPS13A-201ENST00000355766 TLL1O43897 1013 aa11.02□□□□□ -0.65
VPS13A-201ENST00000355766 TMUB1Q9BVT8 246 aa11.02□□□□□ -0.65
VPS13A-201ENST00000355766 POLR1AO95602 1720 aaPredicted RBP11.01□□□□□ -0.65
VPS13A-201ENST00000355766 CDC42BPAQ5VT25 1732 aa11.01□□□□□ -0.65
VPS13A-201ENST00000355766 GFRA3O60609 400 aa11.01□□□□□ -0.65
VPS13A-201ENST00000355766 VWDEQ8N2E2 1590 aa11□□□□□ -0.65
VPS13A-201ENST00000355766 LAPTM4AQ15012 233 aa11□□□□□ -0.65
VPS13A-201ENST00000355766 SPAG9O60271 1321 aaKnown RBP11□□□□□ -0.65
VPS13A-201ENST00000355766 NLRP7Q8WX94 980 aa10.99□□□□□ -0.65
VPS13A-201ENST00000355766 RNF223E7ERA6 249 aa10.98□□□□□ -0.65
VPS13A-201ENST00000355766 DAXXQ9UER7 740 aaPredicted RBP10.98□□□□□ -0.65
VPS13A-201ENST00000355766 GPIHBP1Q8IV16 184 aa10.97□□□□□ -0.65
VPS13A-201ENST00000355766 CASKIN1Q8WXD9 1431 aa10.97□□□□□ -0.65
VPS13A-201ENST00000355766 KIAA1107Q9UPP5 1409 aa10.97□□□□□ -0.65
VPS13A-201ENST00000355766 PLEKHH2Q8IVE3 1493 aa10.97□□□□□ -0.65
VPS13A-201ENST00000355766 RNF17Q9BXT8 1623 aaKnown RBP10.97□□□□□ -0.65
VPS13A-201ENST00000355766 SYNMO15061 1565 aa10.96□□□□□ -0.65
VPS13A-201ENST00000355766 NR1I2O75469 434 aa10.96□□□□□ -0.65
VPS13A-201ENST00000355766 RSPH4AQ5TD94 716 aa10.96□□□□□ -0.65
VPS13A-201ENST00000355766 VSIG10Q8N0Z9 540 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms