RNA–Protein interactions for RNA: ENST00000349703.6

RFC1-201, Transcript of replication factor C subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RFC1, Length 4,859 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-201ENST00000349703 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.41□□□□□ -1.22
RFC1-201ENST00000349703 UBE2Q2Q8WVN8 375 aa7.41□□□□□ -1.22
RFC1-201ENST00000349703 TRIM44Q96DX7 344 aaPredicted RBP7.41□□□□□ -1.22
RFC1-201ENST00000349703 LTV1Q96GA3 475 aaPredicted RBP7.41□□□□□ -1.22
RFC1-201ENST00000349703 TRAIPQ9BWF2 469 aa7.41□□□□□ -1.22
RFC1-201ENST00000349703 RIMBP2O15034 1052 aa7.41□□□□□ -1.22
RFC1-201ENST00000349703 NGLY1Q96IV0 654 aa7.41□□□□□ -1.22
RFC1-201ENST00000349703 SMAD5Q99717 465 aaKnown RBP7.41□□□□□ -1.22
RFC1-201ENST00000349703 SIN3AQ96ST3 1273 aa7.4□□□□□ -1.22
RFC1-201ENST00000349703 ZHX3Q9H4I2 956 aa7.4□□□□□ -1.22
RFC1-201ENST00000349703 ZBED9Q6R2W3 1325 aa7.4□□□□□ -1.22
RFC1-201ENST00000349703 C1QBPQ07021 282 aaKnown RBP7.4□□□□□ -1.22
RFC1-201ENST00000349703 ATL2Q8NHH9 583 aa7.4□□□□□ -1.22
RFC1-201ENST00000349703 HIRIP3Q9BW71 556 aaPredicted RBP7.4□□□□□ -1.22
RFC1-201ENST00000349703 SPDYE5A6NIY4 337 aa7.4□□□□□ -1.22
RFC1-201ENST00000349703 TCF3P15923 654 aa7.4□□□□□ -1.23
RFC1-201ENST00000349703 HSP90AB4PQ58FF6 505 aa7.4□□□□□ -1.23
RFC1-201ENST00000349703 PLPP6Q8IY26 295 aa7.4□□□□□ -1.23
RFC1-201ENST00000349703 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.4□□□□□ -1.23
RFC1-201ENST00000349703 GADD45BO75293 160 aaPredicted RBP7.39□□□□□ -1.23
RFC1-201ENST00000349703 PROCA1Q8NCQ7 364 aaPredicted RBP7.39□□□□□ -1.23
RFC1-201ENST00000349703 PHF14O94880 888 aa7.39□□□□□ -1.23
RFC1-201ENST00000349703 ZNF454Q8N9F8 522 aa7.39□□□□□ -1.23
RFC1-201ENST00000349703 ZMYND10O75800 440 aa7.39□□□□□ -1.23
RFC1-201ENST00000349703 MORC4Q8TE76 937 aa7.39□□□□□ -1.23
RFC1-201ENST00000349703 TBC1D2BQ9UPU7 963 aa7.39□□□□□ -1.23
RFC1-201ENST00000349703 FHAD1B1AJZ9 1412 aa7.39□□□□□ -1.23
RFC1-201ENST00000349703 SMARCA2P51531 1590 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 TRIM37O94972 964 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 SKIV2LQ15477 1246 aaKnown RBP7.38□□□□□ -1.23
RFC1-201ENST00000349703 KIF27Q86VH2 1401 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 RUSC2Q8N2Y8 1516 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 PEX14O75381 377 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 ATP1A2P50993 1020 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 CADPS2Q86UW7 1296 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.38□□□□□ -1.23
RFC1-201ENST00000349703 SALL2Q9Y467 1007 aaPredicted RBP7.38□□□□□ -1.23
RFC1-201ENST00000349703 RAPGEF2Q9Y4G8 1499 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 CARNS1A5YM72 827 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 PRMT3O60678 531 aa7.38□□□□□ -1.23
RFC1-201ENST00000349703 MPHOSPH6Q99547 160 aaKnown RBP7.38□□□□□ -1.23
RFC1-201ENST00000349703 IRF6O14896 467 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 BECN1Q14457 450 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 KANK4Q5T7N3 995 aaPredicted RBP7.37□□□□□ -1.23
RFC1-201ENST00000349703 KRT18P05783 430 aaKnown RBP7.37□□□□□ -1.23
RFC1-201ENST00000349703 CPEP16870 476 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 KMT5BQ4FZB7 885 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 PARP9Q8IXQ6 854 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 CUX2O14529 1486 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 IGSF3O75054 1194 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 RIC3Q7Z5B4 369 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 AIDAQ96BJ3 306 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 POM121Q96HA1 1249 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 NUDCQ9Y266 331 aa7.37□□□□□ -1.23
RFC1-201ENST00000349703 MARCH6O60337 910 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 TRIM50Q86XT4 487 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 ZBTB3Q9H5J0 574 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 PACS2Q86VP3 889 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.36□□□□□ -1.231e-8■■■■■ 60
RFC1-201ENST00000349703 RBM27Q9P2N5 1060 aaKnown RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 A6NJR5 290 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 MS4A1P11836 297 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 PRKAR2AP13861 404 aaKnown RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 ZNF211Q13398 564 aaPredicted RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 MEX3CQ5U5Q3 659 aaKnown RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 SCLT1Q96NL6 688 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 UPF2Q9HAU5 1272 aaKnown RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 ERICH3Q5RHP9 1530 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 FMNL1O95466 1100 aaPredicted RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 FDX1P10109 184 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 ATP2B4P23634 1241 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 NAALADL2Q58DX5 795 aa7.36□□□□□ -1.23
RFC1-201ENST00000349703 EIF4G1Q04637 1599 aaKnown RBP7.36□□□□□ -1.23
RFC1-201ENST00000349703 TRIM6-TRIM34B2RNG4 842 aa7.35□□□□□ -1.23
RFC1-201ENST00000349703 ATP6V1E2Q96A05 226 aa7.35□□□□□ -1.23
RFC1-201ENST00000349703 CEP83Q9Y592 693 aa7.35□□□□□ -1.23
RFC1-201ENST00000349703 SMARCA4P51532 1647 aa7.35□□□□□ -1.23
RFC1-201ENST00000349703 HDAC1Q13547 482 aaPredicted RBP7.35□□□□□ -1.23
RFC1-201ENST00000349703 NOD1Q9Y239 953 aa7.35□□□□□ -1.23
RFC1-201ENST00000349703 ARHGAP35Q9NRY4 1499 aa7.35□□□□□ -1.23
RFC1-201ENST00000349703 KSR2Q6VAB6 950 aa7.35□□□□□ -1.23
RFC1-201ENST00000349703 ANP32BQ92688 251 aaKnown RBP7.35□□□□□ -1.23
RFC1-201ENST00000349703 EML3Q32P44 896 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 TRIM11Q96F44 468 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 IGFLR1Q9H665 355 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 TFIP11Q9UBB9 837 aaKnown RBP7.34□□□□□ -1.23
RFC1-201ENST00000349703 TSPY2A6NKD2 308 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 TSPY3P0CV98 308 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 TSPY8P0CW00 308 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 TSPY1Q01534 308 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 NECTIN2Q92692 538 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 USTQ9Y2C2 406 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 ZBTB24O43167 697 aaPredicted RBP7.34□□□□□ -1.23
RFC1-201ENST00000349703 SLC4A8Q2Y0W8 1093 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 FAM161AQ3B820 660 aa7.34□□□□□ -1.23
RFC1-201ENST00000349703 CTDP1Q9Y5B0 961 aaPredicted RBP7.34□□□□□ -1.23
RFC1-201ENST00000349703 PTMAP06454 111 aaKnown RBP7.34□□□□□ -1.24
RFC1-201ENST00000349703 DCBLD2Q96PD2 775 aa7.34□□□□□ -1.24
RFC1-201ENST00000349703 SRPK1Q96SB4 655 aaKnown RBP7.34□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms