RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 SMARCE1Q969G3 411 aa27.64■■■□□ 2.01
NPAS3-201ENST00000346562 PIP4K2AP48426 406 aaPredicted RBP27.63■■■□□ 2.01
NPAS3-201ENST00000346562 SYCP1Q15431 976 aa27.63■■■□□ 2.01
NPAS3-201ENST00000346562 CNTLNQ9NXG0 1405 aa27.63■■■□□ 2.01
NPAS3-201ENST00000346562 FILIP1LQ4L180 1135 aa27.63■■■□□ 2.01
NPAS3-201ENST00000346562 KDM4AO75164 1064 aa27.62■■■□□ 2.01
NPAS3-201ENST00000346562 ERCC4Q92889 916 aaPredicted RBP27.62■■■□□ 2.01
NPAS3-201ENST00000346562 ZNF396Q96N95 335 aaPredicted RBP27.62■■■□□ 2.01
NPAS3-201ENST00000346562 FGD6Q6ZV73 1430 aa27.62■■■□□ 2.01
NPAS3-201ENST00000346562 PANK1Q8TE04 598 aa27.62■■■□□ 2.01
NPAS3-201ENST00000346562 CCDC39Q9UFE4 941 aa27.61■■■□□ 2.01
NPAS3-201ENST00000346562 STRN4Q9NRL3 753 aa27.61■■■□□ 2.01
NPAS3-201ENST00000346562 ANKRD50Q9ULJ7 1429 aa27.61■■■□□ 2.01
NPAS3-201ENST00000346562 SCAPERQ9BY12 1400 aa27.6■■■□□ 2.01
NPAS3-201ENST00000346562 DCTN1Q14203 1278 aa27.6■■■□□ 2.01
NPAS3-201ENST00000346562 TMEM132EQ6IEE7 984 aa27.6■■■□□ 2.01
NPAS3-201ENST00000346562 PAF1Q8N7H5 531 aa27.6■■■□□ 2.01
NPAS3-201ENST00000346562 TXNDC2Q86VQ3 553 aa27.59■■■□□ 2.01
NPAS3-201ENST00000346562 FGD5Q6ZNL6 1462 aa27.59■■■□□ 2.01
NPAS3-201ENST00000346562 PNISRQ8TF01 805 aaKnown RBP27.59■■■□□ 2.01
NPAS3-201ENST00000346562 KINO60870 393 aaKnown RBP27.59■■■□□ 2.01
NPAS3-201ENST00000346562 PDCP20941 246 aa27.59■■■□□ 2.01
NPAS3-201ENST00000346562 CCP110O43303 1012 aa27.58■■■□□ 2.01
NPAS3-201ENST00000346562 MCM2P49736 904 aa27.58■■■□□ 2.01
NPAS3-201ENST00000346562 BRD4O60885 1362 aaPredicted RBP27.57■■■□□ 2
NPAS3-201ENST00000346562 CABP4P57796 275 aa27.57■■■□□ 2
NPAS3-201ENST00000346562 MTHFSP49914 203 aa27.57■■■□□ 2
NPAS3-201ENST00000346562 NOM1Q5C9Z4 860 aaKnown RBP27.57■■■□□ 2
NPAS3-201ENST00000346562 NACAP1Q9BZK3 213 aa27.57■■■□□ 2
NPAS3-201ENST00000346562 GNAI2P04899 355 aa27.56■■■□□ 2
NPAS3-201ENST00000346562 SPG7Q9UQ90 795 aa27.54■■■□□ 2
NPAS3-201ENST00000346562 SMC2O95347 1197 aa27.54■■■□□ 2
NPAS3-201ENST00000346562 PRKAR2BP31323 418 aa27.54■■■□□ 2
NPAS3-201ENST00000346562 ATP2B1P20020 1258 aa27.53■■■□□ 2
NPAS3-201ENST00000346562 TWISTNBQ3B726 338 aaPredicted RBP27.53■■■□□ 2
NPAS3-201ENST00000346562 PPP1R1BQ9UD71 204 aaPredicted RBP27.53■■■□□ 2
NPAS3-201ENST00000346562 GCC1Q96CN9 775 aa27.52■■■□□ 2
NPAS3-201ENST00000346562 ZSCAN25Q6NSZ9 544 aa27.52■■■□□ 2
NPAS3-201ENST00000346562 JMYQ8N9B5 988 aa27.52■■■□□ 2
NPAS3-201ENST00000346562 FANCIQ9NVI1 1328 aa27.52■■■□□ 2
NPAS3-201ENST00000346562 ATP2B2Q01814 1243 aa27.52■■■□□ 2
NPAS3-201ENST00000346562 FAM43AQ8N2R8 423 aa27.52■■■□□ 2
NPAS3-201ENST00000346562 STK38Q15208 465 aa27.51■■□□□ 1.99
NPAS3-201ENST00000346562 TTLL5Q6EMB2 1281 aa27.51■■□□□ 1.99
NPAS3-201ENST00000346562 FAM13BQ9NYF5 915 aa27.51■■□□□ 1.99
NPAS3-201ENST00000346562 MBD3O95983 291 aa27.51■■□□□ 1.99
NPAS3-201ENST00000346562 TCP11L2Q8N4U5 519 aa27.51■■□□□ 1.99
NPAS3-201ENST00000346562 TRIM22Q8IYM9 498 aa27.5■■□□□ 1.99
NPAS3-201ENST00000346562 TOM1L2Q6ZVM7 507 aa27.5■■□□□ 1.99
NPAS3-201ENST00000346562 ZNF644Q9H582 1327 aaPredicted RBP27.49■■□□□ 1.99
NPAS3-201ENST00000346562 CCT4P50991 539 aaKnown RBP27.49■■□□□ 1.99
NPAS3-201ENST00000346562 THEMISQ8N1K5 641 aaPredicted RBP27.49■■□□□ 1.99
NPAS3-201ENST00000346562 TRIM5Q9C035 493 aa27.49■■□□□ 1.99
NPAS3-201ENST00000346562 CCDC69A6NI79 296 aa27.49■■□□□ 1.99
NPAS3-201ENST00000346562 ANKRD1Q15327 319 aa27.48■■□□□ 1.99
NPAS3-201ENST00000346562 RABEP1Q15276 862 aa27.48■■□□□ 1.99
NPAS3-201ENST00000346562 DACH1Q9UI36 760 aa27.48■■□□□ 1.99
NPAS3-201ENST00000346562 SOGA3Q5TF21 947 aa27.48■■□□□ 1.99
NPAS3-201ENST00000346562 ZNF692Q9BU19 519 aaPredicted RBP27.48■■□□□ 1.99
NPAS3-201ENST00000346562 PRAM1Q96QH2 718 aa27.47■■□□□ 1.99
NPAS3-201ENST00000346562 ZNHIT6Q9NWK9 470 aaKnown RBP27.47■■□□□ 1.99
NPAS3-201ENST00000346562 HDGFL1Q5TGJ6 251 aa27.47■■□□□ 1.99
NPAS3-201ENST00000346562 ADAMTS8Q9UP79 889 aa27.47■■□□□ 1.99
NPAS3-201ENST00000346562 NASPP49321 788 aaPredicted RBP27.47■■□□□ 1.99
NPAS3-201ENST00000346562 TSPY26PQ9H489 355 aa27.47■■□□□ 1.99
NPAS3-201ENST00000346562 STIM1Q13586 685 aa27.46■■□□□ 1.99
NPAS3-201ENST00000346562 NEK4P51957 841 aa27.46■■□□□ 1.99
NPAS3-201ENST00000346562 DHX8Q14562 1220 aaKnown RBP27.46■■□□□ 1.99
NPAS3-201ENST00000346562 SYNJ2O15056 1496 aa27.46■■□□□ 1.99
NPAS3-201ENST00000346562 RAD54L2Q9Y4B4 1467 aa27.46■■□□□ 1.99
NPAS3-201ENST00000346562 HMGB2P26583 209 aaKnown RBP27.45■■□□□ 1.99
NPAS3-201ENST00000346562 TXLNBQ8N3L3 684 aa27.45■■□□□ 1.99
NPAS3-201ENST00000346562 RUSC2Q8N2Y8 1516 aa27.45■■□□□ 1.99
NPAS3-201ENST00000346562 PDCL3Q9H2J4 239 aa27.45■■□□□ 1.99
NPAS3-201ENST00000346562 EXOSC9Q06265 439 aaKnown RBP27.45■■□□□ 1.98
NPAS3-201ENST00000346562 RBM5P52756 815 aaKnown RBP eCLIP27.45■■□□□ 1.98
NPAS3-201ENST00000346562 AEBP1Q8IUX7 1158 aa27.45■■□□□ 1.98
NPAS3-201ENST00000346562 LUC7LQ9NQ29 371 aaKnown RBP27.45■■□□□ 1.98
NPAS3-201ENST00000346562 ERLIN2O94905 339 aa27.45■■□□□ 1.98
NPAS3-201ENST00000346562 MRE11P49959 708 aa27.44■■□□□ 1.98
NPAS3-201ENST00000346562 CYP46A1Q9Y6A2 500 aa27.44■■□□□ 1.98
NPAS3-201ENST00000346562 CCDC191Q8NCU4 936 aa27.44■■□□□ 1.98
NPAS3-201ENST00000346562 MPHOSPH8Q99549 860 aa27.44■■□□□ 1.98
NPAS3-201ENST00000346562 PPP2R1AP30153 589 aa27.43■■□□□ 1.98
NPAS3-201ENST00000346562 BRPF1P55201 1214 aaPredicted RBP27.43■■□□□ 1.98
NPAS3-201ENST00000346562 NUTM2BA6NNL0 878 aaPredicted RBP27.43■■□□□ 1.98
NPAS3-201ENST00000346562 NUTM2EB1AL46 878 aaPredicted RBP27.43■■□□□ 1.98
NPAS3-201ENST00000346562 NUTM2AQ8IVF1 878 aaPredicted RBP27.43■■□□□ 1.98
NPAS3-201ENST00000346562 IGF1RP08069 1367 aa27.42■■□□□ 1.98
NPAS3-201ENST00000346562 SLC4A2P04920 1241 aa27.42■■□□□ 1.98
NPAS3-201ENST00000346562 CFAP70Q5T0N1 1121 aa27.42■■□□□ 1.98
NPAS3-201ENST00000346562 NOL7Q9UMY1 257 aaKnown RBP27.42■■□□□ 1.98
NPAS3-201ENST00000346562 ZRSR2Q15696 482 aaKnown RBP27.42■■□□□ 1.98
NPAS3-201ENST00000346562 DDX54Q8TDD1 881 aaKnown RBP27.42■■□□□ 1.98
NPAS3-201ENST00000346562 CCDC57Q2TAC2 916 aa27.42■■□□□ 1.98
NPAS3-201ENST00000346562 LRRCC1Q9C099 1032 aa27.42■■□□□ 1.98
NPAS3-201ENST00000346562 ZNF530Q6P9A1 599 aaPredicted RBP27.42■■□□□ 1.98
NPAS3-201ENST00000346562 SRCIN1Q9C0H9 1055 aa27.41■■□□□ 1.98
NPAS3-201ENST00000346562 NCOA2Q15596 1464 aa27.41■■□□□ 1.98
NPAS3-201ENST00000346562 NOB1Q9ULX3 412 aaKnown RBP27.4■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms